| 81 |
0.0009408 |
0.05338 |
pa2962 |
tmk |
-12.93 |
0.037833 |
94 -- 116 |
34 -- 55 |
thymidylate kinase |
|
_____________93________________________117\n_____________|_________________________|\n5'-CGC...AACAA______________GUA________AGCGU...AGG-3'\n______________GGC_GGUC_CGCGA___CCAGUUGA\n______________|||_|:||_|||||___||||||||\n______________CCG_CUAG_GCGCU___GGUCAACU\n3'-UUU...AAUGG___A____A________________CACUG...GUU-5'\n_____________|_________________________|\n_____________56________________________33\n |
110 -- 116 |
34 -- 40 |
-28.5201 kcal/mol |
7.46572 kcal/mol |
8.1291 kcal/mol |
93 117@LB@ | |@LB@5'-CGC...AACAA GUA AGCGU...AGG-3'@LB@ GGC GGUC CGCGA CCAGUUGA@LB@ ||| |:|| ||||| ||||||||@LB@ CCG CUAG GCGCU GGUCAACU@LB@3'-UUU...AAUGG A A CACUG...GUU-5'@LB@ | |@LB@ 56 33@LB@@LB@@LB@Energy -12.93 kcal/mol@LB@Hybridization Energy -28.5201 kcal/mol@LB@Unfolding Energy - mRNA 7.46572 kcal/mol@LB@Unfolding Energy - sRNA 8.1291 kcal/mol@LB@@LB@Position - mRNA 94 -- 116@LB@Position - sRNA 34 -- 55@LB@Position Seed - mRNA 110 -- 116@LB@Position Seed - sRNA 34 -- 40@LB@ |
| 82 |
0.000993 |
0.05566 |
pa5549 |
glmS |
-14.85 |
0.011343 |
179 -- 208 |
71 -- 110 |
glucosamine--fructose-6-phosphate aminotransferase |
|
_____________178______________________________________209\n_____________|________________________________________|\n5'-CCG...GUCGA_______A__________________CC__A_________AAUCG...GCG-3'\n______________GGCCUGA__AGGAGA_______AAGA__CC___UGUGUGG\n______________:||||||__||||||_______||||__||___||:||||\n______________UCGGACU__UCCUCU_______UUCU__GG___ACGCACC\n3'-UUU...ACUAA_______AC______AUUAGAC____CA__CUG_______CAGAG...GUU-5'\n_____________|________________________________________|\n_____________111______________________________________70\n |
202 -- 208 |
71 -- 77 |
-33.9361 kcal/mol |
6.17828 kcal/mol |
12.9138 kcal/mol |
178 209@LB@ | |@LB@5'-CCG...GUCGA A CC A AAUCG...GCG-3'@LB@ GGCCUGA AGGAGA AAGA CC UGUGUGG@LB@ :|||||| |||||| |||| || ||:||||@LB@ UCGGACU UCCUCU UUCU GG ACGCACC@LB@3'-UUU...ACUAA AC AUUAGAC CA CUG CAGAG...GUU-5'@LB@ | |@LB@ 111 70@LB@@LB@@LB@Energy -14.85 kcal/mol@LB@Hybridization Energy -33.9361 kcal/mol@LB@Unfolding Energy - mRNA 6.17828 kcal/mol@LB@Unfolding Energy - sRNA 12.9138 kcal/mol@LB@@LB@Position - mRNA 179 -- 208@LB@Position - sRNA 71 -- 110@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 71 -- 77@LB@ |
| 83 |
0.001018 |
0.05635 |
pa1553 |
ccoO1 |
-12.95 |
0.037511 |
176 -- 198 |
75 -- 98 |
cbb3-type cytochrome C oxidase subunit II |
pa1556 |
_____________175______________________199\n_____________|________________________|\n5'-AAC...CGCGC____CGC________C________AAAUG...UGU-3'\n______________AGAU___CUGAGGAG_CCGAC_GU\n______________||||___||||:|||_|||||_|:\n______________UCUA___GACUUCUC_GGCUG_CG\n3'-UUU...ACUCC____UUA________A_____A__CACCC...GUU-5'\n_____________|________________________|\n_____________99_______________________74\n |
184 -- 190 |
84 -- 90 |
-23.7581 kcal/mol |
4.66617 kcal/mol |
6.14905 kcal/mol |
175 199@LB@ | |@LB@5'-AAC...CGCGC CGC C AAAUG...UGU-3'@LB@ AGAU CUGAGGAG CCGAC GU@LB@ |||| ||||:||| ||||| |:@LB@ UCUA GACUUCUC GGCUG CG@LB@3'-UUU...ACUCC UUA A A CACCC...GUU-5'@LB@ | |@LB@ 99 74@LB@@LB@@LB@Energy -12.95 kcal/mol@LB@Hybridization Energy -23.7581 kcal/mol@LB@Unfolding Energy - mRNA 4.66617 kcal/mol@LB@Unfolding Energy - sRNA 6.14905 kcal/mol@LB@@LB@Position - mRNA 176 -- 198@LB@Position - sRNA 75 -- 98@LB@Position Seed - mRNA 184 -- 190@LB@Position Seed - sRNA 84 -- 90@LB@ |
| 84 |
0.001042 |
0.05699 |
pa3121 |
leuC |
-8.58 |
0.330521 |
182 -- 193 |
98 -- 110 |
3-isopropylmalate dehydratase large subunit |
|
_____________181___________194\n_____________|_____________|\n5'-GCA...AAAUG_____________AAUCC...UGC-3'\n______________AG_CUGAUGAGGA\n______________||_||||||||||\n______________UC_GACUACUCCU\n3'-UUU...ACUAA__G__________CUAUU...GUU-5'\n_____________|_____________|\n_____________111___________97\n |
187 -- 193 |
98 -- 104 |
-17.6185 kcal/mol |
6.87469 kcal/mol |
2.16105 kcal/mol |
181 194@LB@ | |@LB@5'-GCA...AAAUG AAUCC...UGC-3'@LB@ AG CUGAUGAGGA@LB@ || ||||||||||@LB@ UC GACUACUCCU@LB@3'-UUU...ACUAA G CUAUU...GUU-5'@LB@ | |@LB@ 111 97@LB@@LB@@LB@Energy -8.58 kcal/mol@LB@Hybridization Energy -17.6185 kcal/mol@LB@Unfolding Energy - mRNA 6.87469 kcal/mol@LB@Unfolding Energy - sRNA 2.16105 kcal/mol@LB@@LB@Position - mRNA 182 -- 193@LB@Position - sRNA 98 -- 110@LB@Position Seed - mRNA 187 -- 193@LB@Position Seed - sRNA 98 -- 104@LB@ |
| 85 |
0.001072 |
0.05733 |
pa4430 |
N/A |
-13.41 |
0.028331 |
184 -- 204 |
101 -- 120 |
cytochrome b |
|
_____________183___________________205\n_____________|_____________________|\n5'-ACC...GCGUG____AG__GAA__________ACAAG...UCU-3'\n______________GACC__GA___AGCCUGAUGA\n______________:|||__||___||||||||||\n______________UUGG__CU___UCGGACUACU\n3'-UUU...AGUUU____CA__AA___________CCUCU...GUU-5'\n_____________|_____________________|\n_____________121___________________100\n |
198 -- 204 |
101 -- 107 |
-22.7142 kcal/mol |
7.05943 kcal/mol |
2.2437 kcal/mol |
183 205@LB@ | |@LB@5'-ACC...GCGUG AG GAA ACAAG...UCU-3'@LB@ GACC GA AGCCUGAUGA@LB@ :||| || ||||||||||@LB@ UUGG CU UCGGACUACU@LB@3'-UUU...AGUUU CA AA CCUCU...GUU-5'@LB@ | |@LB@ 121 100@LB@@LB@@LB@Energy -13.41 kcal/mol@LB@Hybridization Energy -22.7142 kcal/mol@LB@Unfolding Energy - mRNA 7.05943 kcal/mol@LB@Unfolding Energy - sRNA 2.2437 kcal/mol@LB@@LB@Position - mRNA 184 -- 204@LB@Position - sRNA 101 -- 120@LB@Position Seed - mRNA 198 -- 204@LB@Position Seed - sRNA 101 -- 107@LB@ |
| 86 |
0.001073 |
0.05733 |
pa0916 |
N/A |
-12.39 |
0.051807 |
188 -- 200 |
107 -- 119 |
ribosomal protein S12 methylthiotransferase RimO |
|
_____________187___________201\n_____________|_____________|\n5'-GUC...CGCCU____A________AUGUC...GCU-3'\n______________ACCG_GGUUAGCC\n______________||||_|:||||||\n______________UGGC_CUAAUCGG\n3'-UUU...GUUUU____A________ACUAC...GUU-5'\n_____________|_____________|\n_____________120___________106\n |
194 -- 200 |
107 -- 113 |
-18.1643 kcal/mol |
3.54951 kcal/mol |
2.23484 kcal/mol |
187 201@LB@ | |@LB@5'-GUC...CGCCU A AUGUC...GCU-3'@LB@ ACCG GGUUAGCC@LB@ |||| |:||||||@LB@ UGGC CUAAUCGG@LB@3'-UUU...GUUUU A ACUAC...GUU-5'@LB@ | |@LB@ 120 106@LB@@LB@@LB@Energy -12.39 kcal/mol@LB@Hybridization Energy -18.1643 kcal/mol@LB@Unfolding Energy - mRNA 3.54951 kcal/mol@LB@Unfolding Energy - sRNA 2.23484 kcal/mol@LB@@LB@Position - mRNA 188 -- 200@LB@Position - sRNA 107 -- 119@LB@Position Seed - mRNA 194 -- 200@LB@Position Seed - sRNA 107 -- 113@LB@ |
| 87 |
0.001101 |
0.05816 |
pa1343 |
N/A |
-16.83 |
0.002748 |
192 -- 238 |
44 -- 87 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________191______________________________________________239\n_____________|________________________________________________|\n5'-UCG...CGCCU_______CCA____CUA_____AUCC_____C_______C_UG_____CGCAC...CCC-3'\n______________GGAGUCC___UGCG____UCUC____UCAGC_UGCUGGC_G__CUCGC\n______________:||||||___||||____||||____|||||_|:|:|||_|__|||||\n______________UCUCAGG___ACGC____AGAG____AGUCG_AUGGCCG_C__GAGCG\n3'-UUU...AGACU_______CUG____ACCC_____________A_______A_UA_____CUGGU...GUU-5'\n_____________|________________________________________________|\n_____________88_______________________________________________43\n |
192 -- 198 |
81 -- 87 |
-49.5275 kcal/mol |
13.8321 kcal/mol |
18.8647 kcal/mol |
191 239@LB@ | |@LB@5'-UCG...CGCCU CCA CUA AUCC C C UG CGCAC...CCC-3'@LB@ GGAGUCC UGCG UCUC UCAGC UGCUGGC G CUCGC@LB@ :|||||| |||| |||| ||||| |:|:||| | |||||@LB@ UCUCAGG ACGC AGAG AGUCG AUGGCCG C GAGCG@LB@3'-UUU...AGACU CUG ACCC A A UA CUGGU...GUU-5'@LB@ | |@LB@ 88 43@LB@@LB@@LB@Energy -16.83 kcal/mol@LB@Hybridization Energy -49.5275 kcal/mol@LB@Unfolding Energy - mRNA 13.8321 kcal/mol@LB@Unfolding Energy - sRNA 18.8647 kcal/mol@LB@@LB@Position - mRNA 192 -- 238@LB@Position - sRNA 44 -- 87@LB@Position Seed - mRNA 192 -- 198@LB@Position Seed - sRNA 81 -- 87@LB@ |
| 88 |
0.001191 |
0.06151 |
pa1669 |
N/A |
-13.12 |
0.033789 |
66 -- 116 |
61 -- 119 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
pa0077 |
_____________65___________________________________________________________117\n_____________|____________________________________________________________|\n5'-AGG...UGUUC___C____CU_________U__U___U__GG____________C__C_____________GAACA...UCG-3'\n______________ACC_UGGU__GCCUGGUGG_GA_GUA_UC__________GAUU_GC_UGGG_UUCUCGGC\n______________|||_||:|__|||||:||:_||_:||_||__________||:|_||_||||_:||||:||\n______________UGG_ACUA__CGGACUACU_CU_UAU_AG__________CUGA_CG_ACCC_GAGAGUCG\n3'-UUU...GUUUU___C____AU_________C__C___U__ACUUCUCAGG_______C____A________AAUGG...GUU-5'\n_____________|____________________________________________________________|\n_____________120__________________________________________________________60\n |
78 -- 84 |
101 -- 107 |
-47.9471 kcal/mol |
19.2589 kcal/mol |
15.5734 kcal/mol |
65 117@LB@ | |@LB@5'-AGG...UGUUC C CU U U U GG C C GAACA...UCG-3'@LB@ ACC UGGU GCCUGGUGG GA GUA UC GAUU GC UGGG UUCUCGGC@LB@ ||| ||:| |||||:||: || :|| || ||:| || |||| :||||:||@LB@ UGG ACUA CGGACUACU CU UAU AG CUGA CG ACCC GAGAGUCG@LB@3'-UUU...GUUUU C AU C C U ACUUCUCAGG C A AAUGG...GUU-5'@LB@ | |@LB@ 120 60@LB@@LB@@LB@Energy -13.12 kcal/mol@LB@Hybridization Energy -47.9471 kcal/mol@LB@Unfolding Energy - mRNA 19.2589 kcal/mol@LB@Unfolding Energy - sRNA 15.5734 kcal/mol@LB@@LB@Position - mRNA 66 -- 116@LB@Position - sRNA 61 -- 119@LB@Position Seed - mRNA 78 -- 84@LB@Position Seed - sRNA 101 -- 107@LB@ |
| 89 |
0.001191 |
0.06151 |
pa1669 |
N/A |
-13.12 |
0.033789 |
66 -- 116 |
61 -- 119 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
pa0077 |
_____________65___________________________________________________________117\n_____________|____________________________________________________________|\n5'-AGG...UGUUC___C____CU_________U__U___U__GG____________C__C_____________GAACA...UCG-3'\n______________ACC_UGGU__GCCUGGUGG_GA_GUA_UC__________GAUU_GC_UGGG_UUCUCGGC\n______________|||_||:|__|||||:||:_||_:||_||__________||:|_||_||||_:||||:||\n______________UGG_ACUA__CGGACUACU_CU_UAU_AG__________CUGA_CG_ACCC_GAGAGUCG\n3'-UUU...GUUUU___C____AU_________C__C___U__ACUUCUCAGG_______C____A________AAUGG...GUU-5'\n_____________|____________________________________________________________|\n_____________120__________________________________________________________60\n |
78 -- 84 |
101 -- 107 |
-47.9471 kcal/mol |
19.2589 kcal/mol |
15.5734 kcal/mol |
65 117@LB@ | |@LB@5'-AGG...UGUUC C CU U U U GG C C GAACA...UCG-3'@LB@ ACC UGGU GCCUGGUGG GA GUA UC GAUU GC UGGG UUCUCGGC@LB@ ||| ||:| |||||:||: || :|| || ||:| || |||| :||||:||@LB@ UGG ACUA CGGACUACU CU UAU AG CUGA CG ACCC GAGAGUCG@LB@3'-UUU...GUUUU C AU C C U ACUUCUCAGG C A AAUGG...GUU-5'@LB@ | |@LB@ 120 60@LB@@LB@@LB@Energy -13.12 kcal/mol@LB@Hybridization Energy -47.9471 kcal/mol@LB@Unfolding Energy - mRNA 19.2589 kcal/mol@LB@Unfolding Energy - sRNA 15.5734 kcal/mol@LB@@LB@Position - mRNA 66 -- 116@LB@Position - sRNA 61 -- 119@LB@Position Seed - mRNA 78 -- 84@LB@Position Seed - sRNA 101 -- 107@LB@ |
| 90 |
0.001223 |
0.06177 |
pa1071 |
braF |
-14.34 |
0.015804 |
45 -- 124 |
40 -- 117 |
ABC transporter ATP-binding protein |
|
_____________44______________________________________________________________________________________125\n_____________|_______________________________________________________________________________________|\n5'-AUC...CUCGG______ACUC___GCG__U__U______G___C_______AG__AA____C_____CAAC__AA_____CAU_______________UGACC...UGG-3'\n______________CGUGAU____GCC____G_GG_GAUGGU_CUG_____UCC__GA__UGCG_GGGUU_____G__UACCG___GCUGAUCUU_CGGCC\n______________||||||____|||____|_||_|||::|_|||_____|||__||__||||_||||:_____|__|||||___||||||||:_||:||\n______________GCACUA____CGG____C_CC_CUAUUA_GAC_____AGG__CU__ACGC_CCCAG_____C__AUGGC___CGACUAGAG_GCUGG\n3'-UUU...UUUUG______AU_____ACUA_U__U__________UUCUC_______G_____A_____AGAGU_GA_________________C_____UCAAC...GUU-5'\n_____________|_______________________________________________________________________________________|\n_____________118_____________________________________________________________________________________39\n |
112 -- 118 |
47 -- 53 |
-64.1742 kcal/mol |
26.441 kcal/mol |
23.3958 kcal/mol |
44 125@LB@ | |@LB@5'-AUC...CUCGG ACUC GCG U U G C AG AA C CAAC AA CAU UGACC...UGG-3'@LB@ CGUGAU GCC G GG GAUGGU CUG UCC GA UGCG GGGUU G UACCG GCUGAUCUU CGGCC@LB@ |||||| ||| | || |||::| ||| ||| || |||| ||||: | ||||| ||||||||: ||:||@LB@ GCACUA CGG C CC CUAUUA GAC AGG CU ACGC CCCAG C AUGGC CGACUAGAG GCUGG@LB@3'-UUU...UUUUG AU ACUA U U UUCUC G A AGAGU GA C UCAAC...GUU-5'@LB@ | |@LB@ 118 39@LB@@LB@@LB@Energy -14.34 kcal/mol@LB@Hybridization Energy -64.1742 kcal/mol@LB@Unfolding Energy - mRNA 26.441 kcal/mol@LB@Unfolding Energy - sRNA 23.3958 kcal/mol@LB@@LB@Position - mRNA 45 -- 124@LB@Position - sRNA 40 -- 117@LB@Position Seed - mRNA 112 -- 118@LB@Position Seed - sRNA 47 -- 53@LB@ |
