191 |
0.005174 |
0.1243 |
pa4409 |
ftsQ |
-12.87 |
0.039132 |
188 -- 243 |
45 -- 102 |
cell division protein FtsQ |
|
_____________187__________________________________________________________244\n_____________|____________________________________________________________|\n5'-ACG...GAGGC__________GCCA____U____GU_____UCC____A______AAC_____G_______GCCGC...AAC-3'\n______________GAGGGGAUAA____UGAA_GG_C__ACUGC____GUC__UCAGC___CCGGU_GA_CUCG\n______________||||:|||||____||||_:|_|__|||||____|||__|||||___||||:_||_||||\n______________CUCCUCUAUU____ACUU_UC_G__UGACG____CAG__AGUCG___GGCCG_CU_GAGC\n3'-UUU...GACUA__________AG______C__A_GC_____CACC___AG_____AAU_____A__A____GCUGG...GUU-5'\n_____________|____________________________________________________________|\n_____________103__________________________________________________________44\n |
190 -- 196 |
94 -- 100 |
-51.9774 kcal/mol |
17.8775 kcal/mol |
21.2308 kcal/mol |
187 244@LB@ | |@LB@5'-ACG...GAGGC GCCA U GU UCC A AAC G GCCGC...AAC-3'@LB@ GAGGGGAUAA UGAA GG C ACUGC GUC UCAGC CCGGU GA CUCG@LB@ ||||:||||| |||| :| | ||||| ||| ||||| ||||: || ||||@LB@ CUCCUCUAUU ACUU UC G UGACG CAG AGUCG GGCCG CU GAGC@LB@3'-UUU...GACUA AG C A GC CACC AG AAU A A GCUGG...GUU-5'@LB@ | |@LB@ 103 44@LB@@LB@@LB@Energy -12.87 kcal/mol@LB@Hybridization Energy -51.9774 kcal/mol@LB@Unfolding Energy - mRNA 17.8775 kcal/mol@LB@Unfolding Energy - sRNA 21.2308 kcal/mol@LB@@LB@Position - mRNA 188 -- 243@LB@Position - sRNA 45 -- 102@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 94 -- 100@LB@ |
192 |
0.005234 |
0.1243 |
pa1840 |
N/A |
-6.31 |
0.681723 |
125 -- 149 |
99 -- 122 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________124_________________________150\n_____________|___________________________|\n5'-GCA...GCGCC_______GC_______G_____G____UCUUG...ACG-3'\n______________GAGAUCG__GA__GGC_CUGGU_GAGG\n______________:|:|:||__||__:||_|||:|_||||\n______________UUUUGGC__CU__UCG_GACUA_CUCC\n3'-UUU...CCAGU_______A___AA______________UCUAU...GUU-5'\n_____________|___________________________|\n_____________123_________________________98\n |
125 -- 131 |
116 -- 122 |
-20.2979 kcal/mol |
11.7389 kcal/mol |
2.25034 kcal/mol |
124 150@LB@ | |@LB@5'-GCA...GCGCC GC G G UCUUG...ACG-3'@LB@ GAGAUCG GA GGC CUGGU GAGG@LB@ :|:|:|| || :|| |||:| ||||@LB@ UUUUGGC CU UCG GACUA CUCC@LB@3'-UUU...CCAGU A AA UCUAU...GUU-5'@LB@ | |@LB@ 123 98@LB@@LB@@LB@Energy -6.31 kcal/mol@LB@Hybridization Energy -20.2979 kcal/mol@LB@Unfolding Energy - mRNA 11.7389 kcal/mol@LB@Unfolding Energy - sRNA 2.25034 kcal/mol@LB@@LB@Position - mRNA 125 -- 149@LB@Position - sRNA 99 -- 122@LB@Position Seed - mRNA 125 -- 131@LB@Position Seed - sRNA 116 -- 122@LB@ |
193 |
0.005243 |
0.1243 |
pa3725 |
recJ |
-10.65 |
0.130688 |
184 -- 203 |
102 -- 119 |
single-stranded-DNA-specific exonuclease RecJ |
|
_____________183__________________204\n_____________|____________________|\n5'-CGU...GUCGA____AAC__GUGA_______CGUAU...GCG-3'\n______________GCCG___GA____CCUGAUG\n______________:|||___||____|||||||\n______________UGGC___CU____GGACUAC\n3'-UUU...GUUUU____A____AAUC_______UCCUC...GUU-5'\n_____________|____________________|\n_____________120__________________101\n |
197 -- 203 |
102 -- 108 |
-15.7224 kcal/mol |
2.82992 kcal/mol |
2.24274 kcal/mol |
183 204@LB@ | |@LB@5'-CGU...GUCGA AAC GUGA CGUAU...GCG-3'@LB@ GCCG GA CCUGAUG@LB@ :||| || |||||||@LB@ UGGC CU GGACUAC@LB@3'-UUU...GUUUU A AAUC UCCUC...GUU-5'@LB@ | |@LB@ 120 101@LB@@LB@@LB@Energy -10.65 kcal/mol@LB@Hybridization Energy -15.7224 kcal/mol@LB@Unfolding Energy - mRNA 2.82992 kcal/mol@LB@Unfolding Energy - sRNA 2.24274 kcal/mol@LB@@LB@Position - mRNA 184 -- 203@LB@Position - sRNA 102 -- 119@LB@Position Seed - mRNA 197 -- 203@LB@Position Seed - sRNA 102 -- 108@LB@ |
194 |
0.005258 |
0.1243 |
pa3808 |
N/A |
-13.66 |
0.024437 |
189 -- 216 |
98 -- 123 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________188__________________________217\n_____________|____________________________|\n5'-CGC...UAGUA_____G____CAAUG_______AAU___CCGAU...GGC-3'\n______________GAGGA_CGUG_____AGCCUGA___GGA\n______________:|::|_||||_____|||||||___|||\n______________UUUUU_GCAC_____UCGGACU___CCU\n3'-UUU...CCCAG_____G____UAA_________ACU___CUAUU...GUU-5'\n_____________|____________________________|\n_____________124__________________________97\n |
204 -- 210 |
104 -- 110 |
-22.3129 kcal/mol |
6.40825 kcal/mol |
2.25245 kcal/mol |
188 217@LB@ | |@LB@5'-CGC...UAGUA G CAAUG AAU CCGAU...GGC-3'@LB@ GAGGA CGUG AGCCUGA GGA@LB@ :|::| |||| ||||||| |||@LB@ UUUUU GCAC UCGGACU CCU@LB@3'-UUU...CCCAG G UAA ACU CUAUU...GUU-5'@LB@ | |@LB@ 124 97@LB@@LB@@LB@Energy -13.66 kcal/mol@LB@Hybridization Energy -22.3129 kcal/mol@LB@Unfolding Energy - mRNA 6.40825 kcal/mol@LB@Unfolding Energy - sRNA 2.25245 kcal/mol@LB@@LB@Position - mRNA 189 -- 216@LB@Position - sRNA 98 -- 123@LB@Position Seed - mRNA 204 -- 210@LB@Position Seed - sRNA 104 -- 110@LB@ |
195 |
0.005273 |
0.1243 |
pa4698 |
N/A |
-10.50 |
0.140691 |
227 -- 236 |
35 -- 44 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________226________237\n_____________|__________|\n5'-CUC...CUGGC__________UUGCU...AAG-3'\n______________CGACCAGUUG\n______________||||||||||\n______________GCUGGUCAAC\n3'-UUU...AGAGC__________UCACU...GUU-5'\n_____________|__________|\n_____________45_________34\n |
230 -- 236 |
35 -- 41 |
-16.2278 kcal/mol |
3.48351 kcal/mol |
2.24737 kcal/mol |
226 237@LB@ | |@LB@5'-CUC...CUGGC UUGCU...AAG-3'@LB@ CGACCAGUUG@LB@ ||||||||||@LB@ GCUGGUCAAC@LB@3'-UUU...AGAGC UCACU...GUU-5'@LB@ | |@LB@ 45 34@LB@@LB@@LB@Energy -10.50 kcal/mol@LB@Hybridization Energy -16.2278 kcal/mol@LB@Unfolding Energy - mRNA 3.48351 kcal/mol@LB@Unfolding Energy - sRNA 2.24737 kcal/mol@LB@@LB@Position - mRNA 227 -- 236@LB@Position - sRNA 35 -- 44@LB@Position Seed - mRNA 230 -- 236@LB@Position Seed - sRNA 35 -- 41@LB@ |
196 |
0.005339 |
0.1252 |
pa1085 |
flgJ |
-8.97 |
0.282317 |
179 -- 193 |
98 -- 119 |
peptidoglycan hydrolase FlgJ |
|
_____________178____________________194\n_____________|______________________|\n5'-GGU...ACCUG______________________CGACG...GCG-3'\n______________AUCGUGAUU_______UGAGGA\n______________|:|||||||_______||||||\n______________UGGCACUAA_______ACUCCU\n3'-UUU...GUUUU_________UCGGACU______CUAUU...GUU-5'\n_____________|______________________|\n_____________120____________________97\n |
181 -- 187 |
111 -- 117 |
-15.6275 kcal/mol |
4.40725 kcal/mol |
2.25153 kcal/mol |
178 194@LB@ | |@LB@5'-GGU...ACCUG CGACG...GCG-3'@LB@ AUCGUGAUU UGAGGA@LB@ |:||||||| ||||||@LB@ UGGCACUAA ACUCCU@LB@3'-UUU...GUUUU UCGGACU CUAUU...GUU-5'@LB@ | |@LB@ 120 97@LB@@LB@@LB@Energy -8.97 kcal/mol@LB@Hybridization Energy -15.6275 kcal/mol@LB@Unfolding Energy - mRNA 4.40725 kcal/mol@LB@Unfolding Energy - sRNA 2.25153 kcal/mol@LB@@LB@Position - mRNA 179 -- 193@LB@Position - sRNA 98 -- 119@LB@Position Seed - mRNA 181 -- 187@LB@Position Seed - sRNA 111 -- 117@LB@ |
197 |
0.005405 |
0.1261 |
pa2580 |
N/A |
-16.79 |
0.002834 |
13 -- 30 |
70 -- 88 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________12__________________31\n_____________|___________________|\n5'-GUG...UCAUC___________________GGCGC...ACC-3'\n______________GAGGG_CUGGCUGCGUGGG\n______________:||:|_|:|:|||||||||\n______________UUCUC_GGCUGACGCACCC\n3'-UUU...UAGAC_____A_____________AGAGA...GUU-5'\n_____________|___________________|\n_____________89__________________69\n |
24 -- 30 |
70 -- 76 |
-30.7983 kcal/mol |
8.14478 kcal/mol |
5.86376 kcal/mol |
12 31@LB@ | |@LB@5'-GUG...UCAUC GGCGC...ACC-3'@LB@ GAGGG CUGGCUGCGUGGG@LB@ :||:| |:|:|||||||||@LB@ UUCUC GGCUGACGCACCC@LB@3'-UUU...UAGAC A AGAGA...GUU-5'@LB@ | |@LB@ 89 69@LB@@LB@@LB@Energy -16.79 kcal/mol@LB@Hybridization Energy -30.7983 kcal/mol@LB@Unfolding Energy - mRNA 8.14478 kcal/mol@LB@Unfolding Energy - sRNA 5.86376 kcal/mol@LB@@LB@Position - mRNA 13 -- 30@LB@Position - sRNA 70 -- 88@LB@Position Seed - mRNA 24 -- 30@LB@Position Seed - sRNA 70 -- 76@LB@ |
198 |
0.005468 |
0.1268 |
pa5463 |
N/A |
-11.00 |
0.109950 |
289 -- 298 |
38 -- 47 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________288________299\n_____________|__________|\n5'-GUU...GGUGG__________CA-3'\n______________UCGCGACCAG\n______________||||||||||\n______________AGCGCUGGUC\n3'-UUU...ACUAG__________AACUC...GUU-5'\n_____________|__________|\n_____________48_________37\n |
292 -- 298 |
38 -- 44 |
-19.1199 kcal/mol |
4.44679 kcal/mol |
3.68214 kcal/mol |
288 299@LB@ | |@LB@5'-GUU...GGUGG CA-3'@LB@ UCGCGACCAG@LB@ ||||||||||@LB@ AGCGCUGGUC@LB@3'-UUU...ACUAG AACUC...GUU-5'@LB@ | |@LB@ 48 37@LB@@LB@@LB@Energy -11.00 kcal/mol@LB@Hybridization Energy -19.1199 kcal/mol@LB@Unfolding Energy - mRNA 4.44679 kcal/mol@LB@Unfolding Energy - sRNA 3.68214 kcal/mol@LB@@LB@Position - mRNA 289 -- 298@LB@Position - sRNA 38 -- 47@LB@Position Seed - mRNA 292 -- 298@LB@Position Seed - sRNA 38 -- 44@LB@ |
199 |
0.005488 |
0.1268 |
pa1158 |
N/A |
-11.27 |
0.095596 |
213 -- 231 |
101 -- 120 |
two-component sensor |
|
_____________212__________________232\n_____________|____________________|\n5'-GCG...GACGC_____C_CGC__________ACGGC...CCG-3'\n______________AGCCG_G____GCCUGAUGA\n______________|:|||_|____|||||||||\n______________UUGGC_C____CGGACUACU\n3'-UUU...AGUUU_____A_UAAU_________CCUCU...GUU-5'\n_____________|____________________|\n_____________121__________________100\n |
225 -- 231 |
101 -- 107 |
-21.6813 kcal/mol |
8.17512 kcal/mol |
2.2437 kcal/mol |
212 232@LB@ | |@LB@5'-GCG...GACGC C CGC ACGGC...CCG-3'@LB@ AGCCG G GCCUGAUGA@LB@ |:||| | |||||||||@LB@ UUGGC C CGGACUACU@LB@3'-UUU...AGUUU A UAAU CCUCU...GUU-5'@LB@ | |@LB@ 121 100@LB@@LB@@LB@Energy -11.27 kcal/mol@LB@Hybridization Energy -21.6813 kcal/mol@LB@Unfolding Energy - mRNA 8.17512 kcal/mol@LB@Unfolding Energy - sRNA 2.2437 kcal/mol@LB@@LB@Position - mRNA 213 -- 231@LB@Position - sRNA 101 -- 120@LB@Position Seed - mRNA 225 -- 231@LB@Position Seed - sRNA 101 -- 107@LB@ |
200 |
0.005522 |
0.1269 |
pa1052 |
N/A |
-14.49 |
0.014391 |
203 -- 224 |
103 -- 123 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________202____________________225\n_____________|______________________|\n5'-AUG...CUGAU______________CU______UCGUU...AGG-3'\n______________GAAAAUCGUGAUUG__CCUGAU\n______________:||||:|||||||:__||||||\n______________UUUUUGGCACUAAU__GGACUA\n3'-UUU...CCCAG______________C_______CUCCU...GUU-5'\n_____________|______________________|\n_____________124____________________102\n |
210 -- 216 |
110 -- 116 |
-22.3823 kcal/mol |
5.65319 kcal/mol |
2.24344 kcal/mol |
202 225@LB@ | |@LB@5'-AUG...CUGAU CU UCGUU...AGG-3'@LB@ GAAAAUCGUGAUUG CCUGAU@LB@ :||||:|||||||: ||||||@LB@ UUUUUGGCACUAAU GGACUA@LB@3'-UUU...CCCAG C CUCCU...GUU-5'@LB@ | |@LB@ 124 102@LB@@LB@@LB@Energy -14.49 kcal/mol@LB@Hybridization Energy -22.3823 kcal/mol@LB@Unfolding Energy - mRNA 5.65319 kcal/mol@LB@Unfolding Energy - sRNA 2.24344 kcal/mol@LB@@LB@Position - mRNA 203 -- 224@LB@Position - sRNA 103 -- 123@LB@Position Seed - mRNA 210 -- 216@LB@Position Seed - sRNA 110 -- 116@LB@ |