41 |
0.000201 |
0.02253 |
pa1808 |
N/A |
-10.12 |
0.169236 |
14 -- 78 |
39 -- 99 |
ABC transporter permease |
|
_____________13__________________________________________________________________79\n_____________|___________________________________________________________________|\n5'-UUC...UGAUC__________UCUCCC______G__CUC__C__G________CGA_G____GA___A__________CCCGG...GCA-3'\n______________GAGGUGAUCU_______UCGAC_GC___GG_CU_CUCAGCUU___A_CGGC__UGA_C_CGCGACUA\n______________|||:|:||||_______:||||_||___||_||_||||||||___|_||||__|||_|_||||||:|\n______________CUCUAUUAGA_______GGCUG_CG___CC_GA_GAGUCGAA___U_GCCG__ACU_G_GCGCUGGU\n3'-UUU...UACUC__________CUUCUCA_____A__CAC__A_______________G_________A_A________CAACU...GUU-5'\n_____________|___________________________________________________________________|\n_____________100_________________________________________________________________38\n |
72 -- 78 |
39 -- 45 |
-56.2583 kcal/mol |
23.9789 kcal/mol |
22.1648 kcal/mol |
13 79@LB@ | |@LB@5'-UUC...UGAUC UCUCCC G CUC C G CGA G GA A CCCGG...GCA-3'@LB@ GAGGUGAUCU UCGAC GC GG CU CUCAGCUU A CGGC UGA C CGCGACUA@LB@ |||:|:|||| :|||| || || || |||||||| | |||| ||| | ||||||:|@LB@ CUCUAUUAGA GGCUG CG CC GA GAGUCGAA U GCCG ACU G GCGCUGGU@LB@3'-UUU...UACUC CUUCUCA A CAC A G A A CAACU...GUU-5'@LB@ | |@LB@ 100 38@LB@@LB@@LB@Energy -10.12 kcal/mol@LB@Hybridization Energy -56.2583 kcal/mol@LB@Unfolding Energy - mRNA 23.9789 kcal/mol@LB@Unfolding Energy - sRNA 22.1648 kcal/mol@LB@@LB@Position - mRNA 14 -- 78@LB@Position - sRNA 39 -- 99@LB@Position Seed - mRNA 72 -- 78@LB@Position Seed - sRNA 39 -- 45@LB@ |
42 |
0.000247 |
0.02703 |
pa4550 |
fimU |
-17.01 |
0.002407 |
39 -- 109 |
35 -- 119 |
type 4 fimbrial biogenesis protein FimU |
pa4549 |
_____________38______________________________________________________________________________________110\n_____________|_______________________________________________________________________________________|\n5'-CCU...UCCGU____C__GC____A__________ACCG_______AA___________A____AUG____ACUU____A_____A____________UCCUG...UCA-3'\n______________ACCG_GA___GCC_____GGGAGA______GGAGA_________CGUG_G_CU___CAGC____CCGG_UGAUC_UG_GACCAGUUG\n______________||||_||___|||_____:|||||______|:|||_________||||_|_||___||||____||||_|||||_:|_|||||||||\n______________UGGC_CU___CGG_____UCCUCU______CUUCU_________GCAC_C_GA___GUCG____GGCC_ACUAG_GC_CUGGUCAAC\n3'-UUU...GUUUU____A__AAU___ACUAC______AUUAGA_____CAGGCUGAC____C_A__GA_____AAU_____G_____A__G_________UCACU...GUU-5'\n_____________|_______________________________________________________________________________________|\n_____________120_____________________________________________________________________________________34\n |
103 -- 109 |
35 -- 41 |
-60.4739 kcal/mol |
20.069 kcal/mol |
23.4074 kcal/mol |
38 110@LB@ | |@LB@5'-CCU...UCCGU C GC A ACCG AA A AUG ACUU A A UCCUG...UCA-3'@LB@ ACCG GA GCC GGGAGA GGAGA CGUG G CU CAGC CCGG UGAUC UG GACCAGUUG@LB@ |||| || ||| :||||| |:||| |||| | || |||| |||| ||||| :| |||||||||@LB@ UGGC CU CGG UCCUCU CUUCU GCAC C GA GUCG GGCC ACUAG GC CUGGUCAAC@LB@3'-UUU...GUUUU A AAU ACUAC AUUAGA CAGGCUGAC C A GA AAU G A G UCACU...GUU-5'@LB@ | |@LB@ 120 34@LB@@LB@@LB@Energy -17.01 kcal/mol@LB@Hybridization Energy -60.4739 kcal/mol@LB@Unfolding Energy - mRNA 20.069 kcal/mol@LB@Unfolding Energy - sRNA 23.4074 kcal/mol@LB@@LB@Position - mRNA 39 -- 109@LB@Position - sRNA 35 -- 119@LB@Position Seed - mRNA 103 -- 109@LB@Position Seed - sRNA 35 -- 41@LB@ |
43 |
0.0002634 |
0.02815 |
pa2831 |
N/A |
-19.04 |
0.000437 |
175 -- 195 |
99 -- 118 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________174___________________196\n_____________|_____________________|\n5'-CUG...CGGGU________UC___C_______UUCCC...GCC-3'\n______________CCGUGAUU__GCC_GAUGAGG\n______________||||||||__|||_|||||||\n______________GGCACUAA__CGG_CUACUCC\n3'-UUU...UUUUU________U____A_______UCUAU...GUU-5'\n_____________|_____________________|\n_____________119___________________98\n |
189 -- 195 |
99 -- 105 |
-28.8067 kcal/mol |
7.51614 kcal/mol |
2.24947 kcal/mol |
174 196@LB@ | |@LB@5'-CUG...CGGGU UC C UUCCC...GCC-3'@LB@ CCGUGAUU GCC GAUGAGG@LB@ |||||||| ||| |||||||@LB@ GGCACUAA CGG CUACUCC@LB@3'-UUU...UUUUU U A UCUAU...GUU-5'@LB@ | |@LB@ 119 98@LB@@LB@@LB@Energy -19.04 kcal/mol@LB@Hybridization Energy -28.8067 kcal/mol@LB@Unfolding Energy - mRNA 7.51614 kcal/mol@LB@Unfolding Energy - sRNA 2.24947 kcal/mol@LB@@LB@Position - mRNA 175 -- 195@LB@Position - sRNA 99 -- 118@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 99 -- 105@LB@ |
44 |
0.0002709 |
0.02829 |
pa1340 |
N/A |
-13.31 |
0.030188 |
17 -- 34 |
101 -- 117 |
amino acid ABC transporter permease |
|
_____________16_________________35\n_____________|__________________|\n5'-AAC...GGCGU__C____C__________AGCUG...UCG-3'\n______________CG_UGAU_GGCCUGAUGG\n______________||_||||_:||||||||:\n______________GC_ACUA_UCGGACUACU\n3'-UUU...UUUUG_______A__________CCUCU...GUU-5'\n_____________|__________________|\n_____________118________________100\n |
28 -- 34 |
101 -- 107 |
-22.4618 kcal/mol |
6.92464 kcal/mol |
2.23144 kcal/mol |
16 35@LB@ | |@LB@5'-AAC...GGCGU C C AGCUG...UCG-3'@LB@ CG UGAU GGCCUGAUGG@LB@ || |||| :||||||||:@LB@ GC ACUA UCGGACUACU@LB@3'-UUU...UUUUG A CCUCU...GUU-5'@LB@ | |@LB@ 118 100@LB@@LB@@LB@Energy -13.31 kcal/mol@LB@Hybridization Energy -22.4618 kcal/mol@LB@Unfolding Energy - mRNA 6.92464 kcal/mol@LB@Unfolding Energy - sRNA 2.23144 kcal/mol@LB@@LB@Position - mRNA 17 -- 34@LB@Position - sRNA 101 -- 117@LB@Position Seed - mRNA 28 -- 34@LB@Position Seed - sRNA 101 -- 107@LB@ |
45 |
0.0002969 |
0.02946 |
pa0151 |
N/A |
-17.56 |
0.001552 |
238 -- 273 |
39 -- 82 |
TonB-dependent receptor |
|
_____________237___________________________________________274\n_____________|_____________________________________________|\n5'-GCU...UCUCC___CC__________________C________________C____CCGUG...GCU-3'\n______________CCG__CUGU_____UC_CUCAGC___UCGGCUG_UCUCGC_GCCA\n______________|||__|||:_____||_||||||___:||||||_||||||_:|||\n______________GGC__GACG_____AG_GAGUCG___GGCCGAC_AGAGCG_UGGU\n3'-UUU...UCUCA___U_____CACCC__A______AAU_______U______C____CAACU...GUU-5'\n_____________|_____________________________________________|\n_____________83____________________________________________38\n |
256 -- 262 |
51 -- 57 |
-45.5625 kcal/mol |
9.11749 kcal/mol |
18.8872 kcal/mol |
237 274@LB@ | |@LB@5'-GCU...UCUCC CC C C CCGUG...GCU-3'@LB@ CCG CUGU UC CUCAGC UCGGCUG UCUCGC GCCA@LB@ ||| |||: || |||||| :|||||| |||||| :|||@LB@ GGC GACG AG GAGUCG GGCCGAC AGAGCG UGGU@LB@3'-UUU...UCUCA U CACCC A AAU U C CAACU...GUU-5'@LB@ | |@LB@ 83 38@LB@@LB@@LB@Energy -17.56 kcal/mol@LB@Hybridization Energy -45.5625 kcal/mol@LB@Unfolding Energy - mRNA 9.11749 kcal/mol@LB@Unfolding Energy - sRNA 18.8872 kcal/mol@LB@@LB@Position - mRNA 238 -- 273@LB@Position - sRNA 39 -- 82@LB@Position Seed - mRNA 256 -- 262@LB@Position Seed - sRNA 51 -- 57@LB@ |
46 |
0.0003006 |
0.02946 |
pa4460 |
N/A |
-9.10 |
0.267813 |
234 -- 244 |
75 -- 85 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________233_________245\n_____________|___________|\n5'-GCG...UUUUC___________CGCCC...UCC-3'\n______________GGUCUGACUGC\n______________:|||:||||||\n______________UCAGGCUGACG\n3'-UUU...ACUUC___________CACCC...GUU-5'\n_____________|___________|\n_____________86__________74\n |
238 -- 244 |
75 -- 81 |
-18.7561 kcal/mol |
4.01129 kcal/mol |
5.64974 kcal/mol |
233 245@LB@ | |@LB@5'-GCG...UUUUC CGCCC...UCC-3'@LB@ GGUCUGACUGC@LB@ :|||:||||||@LB@ UCAGGCUGACG@LB@3'-UUU...ACUUC CACCC...GUU-5'@LB@ | |@LB@ 86 74@LB@@LB@@LB@Energy -9.10 kcal/mol@LB@Hybridization Energy -18.7561 kcal/mol@LB@Unfolding Energy - mRNA 4.01129 kcal/mol@LB@Unfolding Energy - sRNA 5.64974 kcal/mol@LB@@LB@Position - mRNA 234 -- 244@LB@Position - sRNA 75 -- 85@LB@Position Seed - mRNA 238 -- 244@LB@Position Seed - sRNA 75 -- 81@LB@ |
47 |
0.0003012 |
0.02946 |
pa1776 |
sigX |
-11.73 |
0.074706 |
90 -- 102 |
103 -- 115 |
RNA polymerase sigma factor SigX |
|
_____________89____________103\n_____________|_____________|\n5'-CGU...CGAUA___C_________CUCAC...UGU-3'\n______________UGA_UGGCCUGAU\n______________|||_|:|||||||\n______________ACU_AUCGGACUA\n3'-UUU...UUGGC___A_________CUCCU...GUU-5'\n_____________|_____________|\n_____________116___________102\n |
96 -- 102 |
103 -- 109 |
-16.1519 kcal/mol |
2.30076 kcal/mol |
2.12156 kcal/mol |
89 103@LB@ | |@LB@5'-CGU...CGAUA C CUCAC...UGU-3'@LB@ UGA UGGCCUGAU@LB@ ||| |:|||||||@LB@ ACU AUCGGACUA@LB@3'-UUU...UUGGC A CUCCU...GUU-5'@LB@ | |@LB@ 116 102@LB@@LB@@LB@Energy -11.73 kcal/mol@LB@Hybridization Energy -16.1519 kcal/mol@LB@Unfolding Energy - mRNA 2.30076 kcal/mol@LB@Unfolding Energy - sRNA 2.12156 kcal/mol@LB@@LB@Position - mRNA 90 -- 102@LB@Position - sRNA 103 -- 115@LB@Position Seed - mRNA 96 -- 102@LB@Position Seed - sRNA 103 -- 109@LB@ |
48 |
0.0003226 |
0.03063 |
pa2507 |
catA |
-12.73 |
0.042466 |
203 -- 291 |
39 -- 120 |
catechol 1 2-dioxygenase |
|
_____________202_______________________________________________________________________________________________292\n_____________|_________________________________________________________________________________________________|\n5'-AUC...GCCAU________AGAUUUCCCAGACU________UCC__CGCU___UC______G__A______GCCAG______A_GA__G______________C____AGGCC...UGG-3'\n______________GACCGUGA______________GCC_GAUG___AG____UCU__GAAGAG_CC____GCG_______CUCA_C__AC_CGGC_GAUC_CGCG_ACCA\n______________:|||||||______________|||_||||___||____|||__||||||_||____|||_______||||_|__||_||||_||||_||||_||||\n______________UUGGCACU______________CGG_CUAC___UC____AGA__CUUCUC_GG____CGC_______GAGU_G__UG_GCCG_CUAG_GCGC_UGGU\n3'-UUU...AGUUU________AAU______________A____UCC__UAUU___________A__CUGA___ACCCAGA____C_AA_______A____A_________CAACU...GUU-5'\n_____________|_________________________________________________________________________________________________|\n_____________121_______________________________________________________________________________________________38\n |
204 -- 210 |
113 -- 119 |
-61.825 kcal/mol |
25.692 kcal/mol |
23.4063 kcal/mol |
202 292@LB@ | |@LB@5'-AUC...GCCAU AGAUUUCCCAGACU UCC CGCU UC G A GCCAG A GA G C AGGCC...UGG-3'@LB@ GACCGUGA GCC GAUG AG UCU GAAGAG CC GCG CUCA C AC CGGC GAUC CGCG ACCA@LB@ :||||||| ||| |||| || ||| |||||| || ||| |||| | || |||| |||| |||| ||||@LB@ UUGGCACU CGG CUAC UC AGA CUUCUC GG CGC GAGU G UG GCCG CUAG GCGC UGGU@LB@3'-UUU...AGUUU AAU A UCC UAUU A CUGA ACCCAGA C AA A A CAACU...GUU-5'@LB@ | |@LB@ 121 38@LB@@LB@@LB@Energy -12.73 kcal/mol@LB@Hybridization Energy -61.825 kcal/mol@LB@Unfolding Energy - mRNA 25.692 kcal/mol@LB@Unfolding Energy - sRNA 23.4063 kcal/mol@LB@@LB@Position - mRNA 203 -- 291@LB@Position - sRNA 39 -- 120@LB@Position Seed - mRNA 204 -- 210@LB@Position Seed - sRNA 113 -- 119@LB@ |
49 |
0.0003265 |
0.03063 |
pa0541 |
N/A |
-11.15 |
0.101438 |
170 -- 235 |
53 -- 118 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________169________________________________________________________________________236\n_____________|__________________________________________________________________________|\n5'-CUA...CGCUU_______CGAC_____AAAAA___CCUUGCCA_____CUGA___________UC_____GU_____________CGGCG...CGA-3'\n______________CCGUGAU____CCUGA_____GAG________UGAAG____AGUCC__CUGC____GUC_____GC_UGCUGGC\n______________|||||||____|||||_____|||________|||||____|||||__||||____|||_____||_|:|:|||\n______________GGCACUA____GGACU_____CUC________ACUUC____UCAGG__GACG____CAG_____CG_AUGGCCG\n3'-UUU...UUUUU_______AUC______ACUC____UAUUAG________________CU____CACC___AGAGU__A_______ACUAG...GUU-5'\n_____________|__________________________________________________________________________|\n_____________119________________________________________________________________________52\n |
229 -- 235 |
53 -- 59 |
-46.4373 kcal/mol |
16.5866 kcal/mol |
18.7053 kcal/mol |
169 236@LB@ | |@LB@5'-CUA...CGCUU CGAC AAAAA CCUUGCCA CUGA UC GU CGGCG...CGA-3'@LB@ CCGUGAU CCUGA GAG UGAAG AGUCC CUGC GUC GC UGCUGGC@LB@ ||||||| ||||| ||| ||||| ||||| |||| ||| || |:|:|||@LB@ GGCACUA GGACU CUC ACUUC UCAGG GACG CAG CG AUGGCCG@LB@3'-UUU...UUUUU AUC ACUC UAUUAG CU CACC AGAGU A ACUAG...GUU-5'@LB@ | |@LB@ 119 52@LB@@LB@@LB@Energy -11.15 kcal/mol@LB@Hybridization Energy -46.4373 kcal/mol@LB@Unfolding Energy - mRNA 16.5866 kcal/mol@LB@Unfolding Energy - sRNA 18.7053 kcal/mol@LB@@LB@Position - mRNA 170 -- 235@LB@Position - sRNA 53 -- 118@LB@Position Seed - mRNA 229 -- 235@LB@Position Seed - sRNA 53 -- 59@LB@ |
50 |
0.0003784 |
0.03426 |
pa2805 |
N/A |
-14.24 |
0.016920 |
210 -- 223 |
74 -- 88 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________209_____________224\n_____________|_______________|\n5'-GCG...CGAAA_______________CGAAC...UCC-3'\n______________GAGAGUCUG_CUGCG\n______________:||||||:|_|||||\n______________UUCUCAGGC_GACGC\n3'-UUU...UAGAC_________U_____ACCCA...GUU-5'\n_____________|_______________|\n_____________89______________73\n |
212 -- 218 |
80 -- 86 |
-22.4876 kcal/mol |
2.4453 kcal/mol |
5.80631 kcal/mol |
209 224@LB@ | |@LB@5'-GCG...CGAAA CGAAC...UCC-3'@LB@ GAGAGUCUG CUGCG@LB@ :||||||:| |||||@LB@ UUCUCAGGC GACGC@LB@3'-UUU...UAGAC U ACCCA...GUU-5'@LB@ | |@LB@ 89 73@LB@@LB@@LB@Energy -14.24 kcal/mol@LB@Hybridization Energy -22.4876 kcal/mol@LB@Unfolding Energy - mRNA 2.4453 kcal/mol@LB@Unfolding Energy - sRNA 5.80631 kcal/mol@LB@@LB@Position - mRNA 210 -- 223@LB@Position - sRNA 74 -- 88@LB@Position Seed - mRNA 212 -- 218@LB@Position Seed - sRNA 80 -- 86@LB@ |