| 181 |
0.004727 |
0.1199 |
pa2509 |
catB |
-12.44 |
0.050225 |
208 -- 226 |
106 -- 121 |
muconate cycloisomerase I |
|
_____________207_________________227\n_____________|___________________|\n5'-GGC...GAGCC__________CCAA_____CGAGU...CCC-3'\n______________AAGCCGUGAU____AGCCU\n______________||:|||||||____|||||\n______________UUUGGCACUA____UCGGA\n3'-UUU...CAGUU__________A________CUACU...GUU-5'\n_____________|___________________|\n_____________122_________________105\n |
211 -- 217 |
112 -- 118 |
-19.0549 kcal/mol |
4.37421 kcal/mol |
2.24058 kcal/mol |
207 227@LB@ | |@LB@5'-GGC...GAGCC CCAA CGAGU...CCC-3'@LB@ AAGCCGUGAU AGCCU@LB@ ||:||||||| |||||@LB@ UUUGGCACUA UCGGA@LB@3'-UUU...CAGUU A CUACU...GUU-5'@LB@ | |@LB@ 122 105@LB@@LB@@LB@Energy -12.44 kcal/mol@LB@Hybridization Energy -19.0549 kcal/mol@LB@Unfolding Energy - mRNA 4.37421 kcal/mol@LB@Unfolding Energy - sRNA 2.24058 kcal/mol@LB@@LB@Position - mRNA 208 -- 226@LB@Position - sRNA 106 -- 121@LB@Position Seed - mRNA 211 -- 217@LB@Position Seed - sRNA 112 -- 118@LB@ |
| 182 |
0.004765 |
0.1199 |
pa1522 |
N/A |
-10.50 |
0.140829 |
28 -- 41 |
106 -- 119 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________27_____________42\n_____________|______________|\n5'-AUC...AGGAC_______CC_____CGCCG...CCG-3'\n______________GCCGUGG__AGCCU\n______________:|||||:__|||||\n______________UGGCACU__UCGGA\n3'-UUU...GUUUU_______AA_____CUACU...GUU-5'\n_____________|______________|\n_____________120____________105\n |
28 -- 34 |
113 -- 119 |
-17.7026 kcal/mol |
4.96349 kcal/mol |
2.24014 kcal/mol |
27 42@LB@ | |@LB@5'-AUC...AGGAC CC CGCCG...CCG-3'@LB@ GCCGUGG AGCCU@LB@ :|||||: |||||@LB@ UGGCACU UCGGA@LB@3'-UUU...GUUUU AA CUACU...GUU-5'@LB@ | |@LB@ 120 105@LB@@LB@@LB@Energy -10.50 kcal/mol@LB@Hybridization Energy -17.7026 kcal/mol@LB@Unfolding Energy - mRNA 4.96349 kcal/mol@LB@Unfolding Energy - sRNA 2.24014 kcal/mol@LB@@LB@Position - mRNA 28 -- 41@LB@Position - sRNA 106 -- 119@LB@Position Seed - mRNA 28 -- 34@LB@Position Seed - sRNA 113 -- 119@LB@ |
| 183 |
0.004788 |
0.1199 |
pa0638 |
N/A |
-13.00 |
0.036234 |
1 -- 21 |
40 -- 62 |
bacteriophage protein |
|
______________1______________________22\n______________|______________________|\n___________5'-__G____________________GAUCG...UCC-3'\n______________GC_UACCGGC_GAUCUCGCG_CU\n______________||_|||||||_|||||||||_|:\n______________CG_AUGGCCG_CUAGAGCGC_GG\n3'-UUU...AGAGU__A_______A_________U__UCAAC...GUU-5'\n_____________|_______________________|\n_____________63______________________39\n |
13 -- 19 |
43 -- 49 |
-33.0928 kcal/mol |
8.24856 kcal/mol |
11.8411 kcal/mol |
1 22@LB@ | |@LB@ 5'- G GAUCG...UCC-3'@LB@ GC UACCGGC GAUCUCGCG CU@LB@ || ||||||| ||||||||| |:@LB@ CG AUGGCCG CUAGAGCGC GG@LB@3'-UUU...AGAGU A A U UCAAC...GUU-5'@LB@ | |@LB@ 63 39@LB@@LB@@LB@Energy -13.00 kcal/mol@LB@Hybridization Energy -33.0928 kcal/mol@LB@Unfolding Energy - mRNA 8.24856 kcal/mol@LB@Unfolding Energy - sRNA 11.8411 kcal/mol@LB@@LB@Position - mRNA 1 -- 21@LB@Position - sRNA 40 -- 62@LB@Position Seed - mRNA 13 -- 19@LB@Position Seed - sRNA 43 -- 49@LB@ |
| 184 |
0.004799 |
0.1199 |
pa1298 |
N/A |
-15.65 |
0.006528 |
2 -- 21 |
39 -- 58 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________1_____________________22\n_____________|_____________________|\n__________5'-C____________C________UCAUG...GCG-3'\n______________GCCGGC_GAUUU_CGCGACCA\n______________:|||||_|||:|_||||||||\n______________UGGCCG_CUAGA_GCGCUGGU\n3'-UUU...UCGAA______A______________CAACU...GUU-5'\n_____________|_____________________|\n_____________59____________________38\n |
15 -- 21 |
39 -- 45 |
-31.6445 kcal/mol |
4.93108 kcal/mol |
11.0618 kcal/mol |
1 22@LB@ | |@LB@ 5'-C C UCAUG...GCG-3'@LB@ GCCGGC GAUUU CGCGACCA@LB@ :||||| |||:| ||||||||@LB@ UGGCCG CUAGA GCGCUGGU@LB@3'-UUU...UCGAA A CAACU...GUU-5'@LB@ | |@LB@ 59 38@LB@@LB@@LB@Energy -15.65 kcal/mol@LB@Hybridization Energy -31.6445 kcal/mol@LB@Unfolding Energy - mRNA 4.93108 kcal/mol@LB@Unfolding Energy - sRNA 11.0618 kcal/mol@LB@@LB@Position - mRNA 2 -- 21@LB@Position - sRNA 39 -- 58@LB@Position Seed - mRNA 15 -- 21@LB@Position Seed - sRNA 39 -- 45@LB@ |
| 185 |
0.004884 |
0.1213 |
pa2528 |
N/A |
-11.72 |
0.074904 |
177 -- 197 |
98 -- 118 |
resistance-nodulation-cell division (RND) efflux membrane fusion protein |
|
_____________176___________________198\n_____________|_____________________|\n5'-CUU...CGCCU____UCUA_______A__A__ACCAU...UGG-3'\n______________CCGU____AGCCUGA_GA_GA\n______________||||____|||||||_||_||\n______________GGCA____UCGGACU_CU_CU\n3'-UUU...UUUUU____CUAA_______A__C__CUAUU...GUU-5'\n_____________|_____________________|\n_____________119___________________97\n |
185 -- 191 |
104 -- 110 |
-18.0515 kcal/mol |
4.07956 kcal/mol |
2.25139 kcal/mol |
176 198@LB@ | |@LB@5'-CUU...CGCCU UCUA A A ACCAU...UGG-3'@LB@ CCGU AGCCUGA GA GA@LB@ |||| ||||||| || ||@LB@ GGCA UCGGACU CU CU@LB@3'-UUU...UUUUU CUAA A C CUAUU...GUU-5'@LB@ | |@LB@ 119 97@LB@@LB@@LB@Energy -11.72 kcal/mol@LB@Hybridization Energy -18.0515 kcal/mol@LB@Unfolding Energy - mRNA 4.07956 kcal/mol@LB@Unfolding Energy - sRNA 2.25139 kcal/mol@LB@@LB@Position - mRNA 177 -- 197@LB@Position - sRNA 98 -- 118@LB@Position Seed - mRNA 185 -- 191@LB@Position Seed - sRNA 104 -- 110@LB@ |
| 186 |
0.004909 |
0.1213 |
pa3889 |
N/A |
-13.61 |
0.025105 |
195 -- 204 |
101 -- 110 |
ABC transporter |
|
_____________194________205\n_____________|__________|\n5'-GUC...AAGGA__________ACCGA...UCA-3'\n______________GGCCUGAUGA\n______________:|||||||||\n______________UCGGACUACU\n3'-UUU...ACUAA__________CCUCU...GUU-5'\n_____________|__________|\n_____________111________100\n |
198 -- 204 |
101 -- 107 |
-17.7978 kcal/mol |
2.07405 kcal/mol |
2.11196 kcal/mol |
194 205@LB@ | |@LB@5'-GUC...AAGGA ACCGA...UCA-3'@LB@ GGCCUGAUGA@LB@ :|||||||||@LB@ UCGGACUACU@LB@3'-UUU...ACUAA CCUCU...GUU-5'@LB@ | |@LB@ 111 100@LB@@LB@@LB@Energy -13.61 kcal/mol@LB@Hybridization Energy -17.7978 kcal/mol@LB@Unfolding Energy - mRNA 2.07405 kcal/mol@LB@Unfolding Energy - sRNA 2.11196 kcal/mol@LB@@LB@Position - mRNA 195 -- 204@LB@Position - sRNA 101 -- 110@LB@Position Seed - mRNA 198 -- 204@LB@Position Seed - sRNA 101 -- 107@LB@ |
| 187 |
0.004933 |
0.1213 |
pa0613 |
N/A |
-16.40 |
0.003821 |
197 -- 220 |
101 -- 120 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________196______________________221\n_____________|________________________|\n5'-GAC...GACAC_________CAA____AUC_____AAUGC...CCA-3'\n______________GACCGUGAU___AGCC___GAUGA\n______________:||||||||___||||___|||||\n______________UUGGCACUA___UCGG___CUACU\n3'-UUU...AGUUU_________A______A_______CCUCU...GUU-5'\n_____________|________________________|\n_____________121______________________100\n |
199 -- 205 |
112 -- 118 |
-24.1405 kcal/mol |
5.50451 kcal/mol |
2.2437 kcal/mol |
196 221@LB@ | |@LB@5'-GAC...GACAC CAA AUC AAUGC...CCA-3'@LB@ GACCGUGAU AGCC GAUGA@LB@ :|||||||| |||| |||||@LB@ UUGGCACUA UCGG CUACU@LB@3'-UUU...AGUUU A A CCUCU...GUU-5'@LB@ | |@LB@ 121 100@LB@@LB@@LB@Energy -16.40 kcal/mol@LB@Hybridization Energy -24.1405 kcal/mol@LB@Unfolding Energy - mRNA 5.50451 kcal/mol@LB@Unfolding Energy - sRNA 2.2437 kcal/mol@LB@@LB@Position - mRNA 197 -- 220@LB@Position - sRNA 101 -- 120@LB@Position Seed - mRNA 199 -- 205@LB@Position Seed - sRNA 112 -- 118@LB@ |
| 188 |
0.00503 |
0.1227 |
pa1766 |
N/A |
-13.35 |
0.029524 |
230 -- 250 |
100 -- 120 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________229___________________251\n_____________|_____________________|\n5'-CGA...GACCU_____C__AA___G_______CAUCA...ACC-3'\n______________GACCG_GA__GGC_UGAUGGG\n______________:||||_||__:||_|||||:|\n______________UUGGC_CU__UCG_ACUACUC\n3'-UUU...AGUUU_____A__AA___G_______CUCUA...GUU-5'\n_____________|_____________________|\n_____________121___________________99\n |
244 -- 250 |
100 -- 106 |
-24.1459 kcal/mol |
8.55357 kcal/mol |
2.24919 kcal/mol |
229 251@LB@ | |@LB@5'-CGA...GACCU C AA G CAUCA...ACC-3'@LB@ GACCG GA GGC UGAUGGG@LB@ :|||| || :|| |||||:|@LB@ UUGGC CU UCG ACUACUC@LB@3'-UUU...AGUUU A AA G CUCUA...GUU-5'@LB@ | |@LB@ 121 99@LB@@LB@@LB@Energy -13.35 kcal/mol@LB@Hybridization Energy -24.1459 kcal/mol@LB@Unfolding Energy - mRNA 8.55357 kcal/mol@LB@Unfolding Energy - sRNA 2.24919 kcal/mol@LB@@LB@Position - mRNA 230 -- 250@LB@Position - sRNA 100 -- 120@LB@Position Seed - mRNA 244 -- 250@LB@Position Seed - sRNA 100 -- 106@LB@ |
| 189 |
0.005044 |
0.1227 |
pa4284 |
recB |
-12.92 |
0.038081 |
40 -- 56 |
70 -- 89 |
exodeoxyribonuclease V subunit beta |
|
_____________39___________________57\n_____________|____________________|\n5'-CCC...ACGAG____________A_______GGGCG...UCA-3'\n______________GGAGGGUUCGGC____UGGG\n______________|:||:||:||:|____||||\n______________CUUCUCAGGCUG____ACCC\n3'-UUU...UUAGA____________ACGC____AGAGA...GUU-5'\n_____________|____________________|\n_____________90___________________69\n |
45 -- 51 |
78 -- 84 |
-22.2148 kcal/mol |
3.43278 kcal/mol |
5.86471 kcal/mol |
39 57@LB@ | |@LB@5'-CCC...ACGAG A GGGCG...UCA-3'@LB@ GGAGGGUUCGGC UGGG@LB@ |:||:||:||:| ||||@LB@ CUUCUCAGGCUG ACCC@LB@3'-UUU...UUAGA ACGC AGAGA...GUU-5'@LB@ | |@LB@ 90 69@LB@@LB@@LB@Energy -12.92 kcal/mol@LB@Hybridization Energy -22.2148 kcal/mol@LB@Unfolding Energy - mRNA 3.43278 kcal/mol@LB@Unfolding Energy - sRNA 5.86471 kcal/mol@LB@@LB@Position - mRNA 40 -- 56@LB@Position - sRNA 70 -- 89@LB@Position Seed - mRNA 45 -- 51@LB@Position Seed - sRNA 78 -- 84@LB@ |
| 190 |
0.005086 |
0.123 |
pa0591 |
N/A |
-15.37 |
0.007942 |
156 -- 173 |
100 -- 120 |
protein ApaG |
|
_____________155___________________174\n_____________|_____________________|\n5'-UCA...CAGGC_____________________ACACU...CGG-3'\n______________AAUCGU___UAGUCUGAUGAG\n______________||:|||___|||:||||||||\n______________UUGGCA___AUCGGACUACUC\n3'-UUU...AGUUU______CUA____________CUCUA...GUU-5'\n_____________|_____________________|\n_____________121___________________99\n |
167 -- 173 |
100 -- 106 |
-22.6098 kcal/mol |
4.99015 kcal/mol |
2.24919 kcal/mol |
155 174@LB@ | |@LB@5'-UCA...CAGGC ACACU...CGG-3'@LB@ AAUCGU UAGUCUGAUGAG@LB@ ||:||| |||:||||||||@LB@ UUGGCA AUCGGACUACUC@LB@3'-UUU...AGUUU CUA CUCUA...GUU-5'@LB@ | |@LB@ 121 99@LB@@LB@@LB@Energy -15.37 kcal/mol@LB@Hybridization Energy -22.6098 kcal/mol@LB@Unfolding Energy - mRNA 4.99015 kcal/mol@LB@Unfolding Energy - sRNA 2.24919 kcal/mol@LB@@LB@Position - mRNA 156 -- 173@LB@Position - sRNA 100 -- 120@LB@Position Seed - mRNA 167 -- 173@LB@Position Seed - sRNA 100 -- 106@LB@ |
