| 161 |
0.004027 |
0.115 |
pa0009 |
glyQ |
-13.96 |
0.020216 |
43 -- 68 |
95 -- 119 |
glycine--tRNA ligase subunit alpha |
|
_____________42_________________________69\n_____________|__________________________|\n5'-GAA...UCCUC________A____A__UA________CGUCG...ACG-3'\n______________AUCGUGGU_GGCC_UG__GAGGGGAU\n______________|:||||:|_:|||_||__||||:|||\n______________UGGCACUA_UCGG_AC__CUCCUCUA\n3'-UUU...GUUUU________A_______UA________UUAGA...GUU-5'\n_____________|__________________________|\n_____________120________________________94\n |
62 -- 68 |
95 -- 101 |
-28.6932 kcal/mol |
8.89956 kcal/mol |
5.83995 kcal/mol |
42 69@LB@ | |@LB@5'-GAA...UCCUC A A UA CGUCG...ACG-3'@LB@ AUCGUGGU GGCC UG GAGGGGAU@LB@ |:||||:| :||| || ||||:|||@LB@ UGGCACUA UCGG AC CUCCUCUA@LB@3'-UUU...GUUUU A UA UUAGA...GUU-5'@LB@ | |@LB@ 120 94@LB@@LB@@LB@Energy -13.96 kcal/mol@LB@Hybridization Energy -28.6932 kcal/mol@LB@Unfolding Energy - mRNA 8.89956 kcal/mol@LB@Unfolding Energy - sRNA 5.83995 kcal/mol@LB@@LB@Position - mRNA 43 -- 68@LB@Position - sRNA 95 -- 119@LB@Position Seed - mRNA 62 -- 68@LB@Position Seed - sRNA 95 -- 101@LB@ |
| 162 |
0.00407 |
0.1155 |
pa4993 |
N/A |
-9.83 |
0.193366 |
13 -- 32 |
104 -- 121 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________12___________________33\n_____________|____________________|\n5'-CGA...CGCGC_____C___AAAA_______ACCAU...GCC-3'\n______________AAGCC_UGA____GGCCUGA\n______________||:||_|||____:||||||\n______________UUUGG_ACU____UCGGACU\n3'-UUU...CAGUU_____C___AA_________ACUCC...GUU-5'\n_____________|____________________|\n_____________122__________________103\n |
26 -- 32 |
104 -- 110 |
-17.5213 kcal/mol |
5.44748 kcal/mol |
2.24203 kcal/mol |
12 33@LB@ | |@LB@5'-CGA...CGCGC C AAAA ACCAU...GCC-3'@LB@ AAGCC UGA GGCCUGA@LB@ ||:|| ||| :||||||@LB@ UUUGG ACU UCGGACU@LB@3'-UUU...CAGUU C AA ACUCC...GUU-5'@LB@ | |@LB@ 122 103@LB@@LB@@LB@Energy -9.83 kcal/mol@LB@Hybridization Energy -17.5213 kcal/mol@LB@Unfolding Energy - mRNA 5.44748 kcal/mol@LB@Unfolding Energy - sRNA 2.24203 kcal/mol@LB@@LB@Position - mRNA 13 -- 32@LB@Position - sRNA 104 -- 121@LB@Position Seed - mRNA 26 -- 32@LB@Position Seed - sRNA 104 -- 110@LB@ |
| 163 |
0.004151 |
0.1159 |
pa3263 |
N/A |
-13.17 |
0.032863 |
133 -- 150 |
104 -- 121 |
recombination associated protein RdgC |
|
_____________132________________151\n_____________|__________________|\n5'-GUA...GCGAC______G___________GCCGC...CCU-3'\n______________GGACCG_GGUUGGCCUGA\n______________::||||_|:||:||||||\n______________UUUGGC_CUAAUCGGACU\n3'-UUU...CAGUU______A___________ACUCC...GUU-5'\n_____________|__________________|\n_____________122________________103\n |
144 -- 150 |
104 -- 110 |
-25.1519 kcal/mol |
9.74439 kcal/mol |
2.24203 kcal/mol |
132 151@LB@ | |@LB@5'-GUA...GCGAC G GCCGC...CCU-3'@LB@ GGACCG GGUUGGCCUGA@LB@ ::|||| |:||:||||||@LB@ UUUGGC CUAAUCGGACU@LB@3'-UUU...CAGUU A ACUCC...GUU-5'@LB@ | |@LB@ 122 103@LB@@LB@@LB@Energy -13.17 kcal/mol@LB@Hybridization Energy -25.1519 kcal/mol@LB@Unfolding Energy - mRNA 9.74439 kcal/mol@LB@Unfolding Energy - sRNA 2.24203 kcal/mol@LB@@LB@Position - mRNA 133 -- 150@LB@Position - sRNA 104 -- 121@LB@Position Seed - mRNA 144 -- 150@LB@Position Seed - sRNA 104 -- 110@LB@ |
| 164 |
0.004161 |
0.1159 |
pa4420 |
N/A |
-11.64 |
0.078545 |
165 -- 187 |
40 -- 62 |
S-adenosyl-methyltransferase MraW |
|
_____________164______________________188\n_____________|________________________|\n5'-GAC...GGUGG_________AC__A__A_______UGAUC...GAA-3'\n______________GC_UGCCGG__GA_CU_CGCGACC\n______________||_|:||||__||_||_|||||||\n______________CG_AUGGCC__CU_GA_GCGCUGG\n3'-UUU...AGAGU__A______GA__A__________UCAAC...GUU-5'\n_____________|________________________|\n_____________63_______________________39\n |
181 -- 187 |
40 -- 46 |
-28.7872 kcal/mol |
5.30942 kcal/mol |
11.8411 kcal/mol |
164 188@LB@ | |@LB@5'-GAC...GGUGG AC A A UGAUC...GAA-3'@LB@ GC UGCCGG GA CU CGCGACC@LB@ || |:|||| || || |||||||@LB@ CG AUGGCC CU GA GCGCUGG@LB@3'-UUU...AGAGU A GA A UCAAC...GUU-5'@LB@ | |@LB@ 63 39@LB@@LB@@LB@Energy -11.64 kcal/mol@LB@Hybridization Energy -28.7872 kcal/mol@LB@Unfolding Energy - mRNA 5.30942 kcal/mol@LB@Unfolding Energy - sRNA 11.8411 kcal/mol@LB@@LB@Position - mRNA 165 -- 187@LB@Position - sRNA 40 -- 62@LB@Position Seed - mRNA 181 -- 187@LB@Position Seed - sRNA 40 -- 46@LB@ |
| 165 |
0.004162 |
0.1159 |
pa1850 |
N/A |
-12.78 |
0.041348 |
242 -- 255 |
104 -- 117 |
transcriptional regulator |
|
_____________241____________256\n_____________|______________|\n5'-AUA...CCCGA______G_______ACGUG...AAC-3'\n______________CGUGAU_AGCCUGG\n______________||||||_||||||:\n______________GCACUA_UCGGACU\n3'-UUU...UUUUG______A_______ACUCC...GUU-5'\n_____________|______________|\n_____________118____________103\n |
249 -- 255 |
104 -- 110 |
-19.8167 kcal/mol |
4.81117 kcal/mol |
2.2292 kcal/mol |
241 256@LB@ | |@LB@5'-AUA...CCCGA G ACGUG...AAC-3'@LB@ CGUGAU AGCCUGG@LB@ |||||| ||||||:@LB@ GCACUA UCGGACU@LB@3'-UUU...UUUUG A ACUCC...GUU-5'@LB@ | |@LB@ 118 103@LB@@LB@@LB@Energy -12.78 kcal/mol@LB@Hybridization Energy -19.8167 kcal/mol@LB@Unfolding Energy - mRNA 4.81117 kcal/mol@LB@Unfolding Energy - sRNA 2.2292 kcal/mol@LB@@LB@Position - mRNA 242 -- 255@LB@Position - sRNA 104 -- 117@LB@Position Seed - mRNA 249 -- 255@LB@Position Seed - sRNA 104 -- 110@LB@ |
| 166 |
0.004233 |
0.117 |
pa2585 |
uvrC |
-12.59 |
0.046141 |
89 -- 105 |
106 -- 123 |
excinuclease ABC subunit C |
|
_____________88_________________106\n_____________|__________________|\n5'-CGC...UCGCC___________A______AUCGC...UGG-3'\n______________GAAGACCGUGA_UA_CCU\n______________:||:|||||||_||_|||\n______________UUUUUGGCACU_AU_GGA\n3'-UUU...CCCAG___________A__C___CUACU...GUU-5'\n_____________|__________________|\n_____________124________________105\n |
93 -- 99 |
113 -- 119 |
-17.5883 kcal/mol |
2.75927 kcal/mol |
2.24138 kcal/mol |
88 106@LB@ | |@LB@5'-CGC...UCGCC A AUCGC...UGG-3'@LB@ GAAGACCGUGA UA CCU@LB@ :||:||||||| || |||@LB@ UUUUUGGCACU AU GGA@LB@3'-UUU...CCCAG A C CUACU...GUU-5'@LB@ | |@LB@ 124 105@LB@@LB@@LB@Energy -12.59 kcal/mol@LB@Hybridization Energy -17.5883 kcal/mol@LB@Unfolding Energy - mRNA 2.75927 kcal/mol@LB@Unfolding Energy - sRNA 2.24138 kcal/mol@LB@@LB@Position - mRNA 89 -- 105@LB@Position - sRNA 106 -- 123@LB@Position Seed - mRNA 93 -- 99@LB@Position Seed - sRNA 113 -- 119@LB@ |
| 167 |
0.004312 |
0.117 |
pa2583 |
N/A |
-13.54 |
0.026172 |
146 -- 169 |
69 -- 89 |
sensor/response regulator hybrid protein |
pa3044 pa3946 pa4982 pa1611 |
_____________145______________________170\n_____________|________________________|\n5'-CCU...UGCCA___C____G_____AG________UCCUG...UGA-3'\n______________GAG_GAGU_UCGAC__GCGUGGGU\n______________||:_||||_:||||__||||||||\n______________CUU_CUCA_GGCUG__CGCACCCA\n3'-UUU...UUAGA______________A_________GAGAG...GUU-5'\n_____________|________________________|\n_____________90_______________________68\n |
163 -- 169 |
69 -- 75 |
-28.6669 kcal/mol |
9.05998 kcal/mol |
6.06593 kcal/mol |
145 170@LB@ | |@LB@5'-CCU...UGCCA C G AG UCCUG...UGA-3'@LB@ GAG GAGU UCGAC GCGUGGGU@LB@ ||: |||| :|||| ||||||||@LB@ CUU CUCA GGCUG CGCACCCA@LB@3'-UUU...UUAGA A GAGAG...GUU-5'@LB@ | |@LB@ 90 68@LB@@LB@@LB@Energy -13.54 kcal/mol@LB@Hybridization Energy -28.6669 kcal/mol@LB@Unfolding Energy - mRNA 9.05998 kcal/mol@LB@Unfolding Energy - sRNA 6.06593 kcal/mol@LB@@LB@Position - mRNA 146 -- 169@LB@Position - sRNA 69 -- 89@LB@Position Seed - mRNA 163 -- 169@LB@Position Seed - sRNA 69 -- 75@LB@ |
| 168 |
0.004312 |
0.117 |
pa2583 |
N/A |
-13.54 |
0.026172 |
146 -- 169 |
69 -- 89 |
sensor/response regulator hybrid protein |
pa3044 pa3946 pa4982 pa1611 |
_____________145______________________170\n_____________|________________________|\n5'-CCU...UGCCA___C____G_____AG________UCCUG...UGA-3'\n______________GAG_GAGU_UCGAC__GCGUGGGU\n______________||:_||||_:||||__||||||||\n______________CUU_CUCA_GGCUG__CGCACCCA\n3'-UUU...UUAGA______________A_________GAGAG...GUU-5'\n_____________|________________________|\n_____________90_______________________68\n |
163 -- 169 |
69 -- 75 |
-28.6669 kcal/mol |
9.05998 kcal/mol |
6.06593 kcal/mol |
145 170@LB@ | |@LB@5'-CCU...UGCCA C G AG UCCUG...UGA-3'@LB@ GAG GAGU UCGAC GCGUGGGU@LB@ ||: |||| :|||| ||||||||@LB@ CUU CUCA GGCUG CGCACCCA@LB@3'-UUU...UUAGA A GAGAG...GUU-5'@LB@ | |@LB@ 90 68@LB@@LB@@LB@Energy -13.54 kcal/mol@LB@Hybridization Energy -28.6669 kcal/mol@LB@Unfolding Energy - mRNA 9.05998 kcal/mol@LB@Unfolding Energy - sRNA 6.06593 kcal/mol@LB@@LB@Position - mRNA 146 -- 169@LB@Position - sRNA 69 -- 89@LB@Position Seed - mRNA 163 -- 169@LB@Position Seed - sRNA 69 -- 75@LB@ |
| 169 |
0.004373 |
0.117 |
pa4102 |
bfmS |
-16.20 |
0.004411 |
15 -- 27 |
35 -- 47 |
protein BfmS |
|
_____________14____________28\n_____________|_____________|\n5'-CAA...CUCAG_____________CUCAA...CGC-3'\n______________UCGCGACCAGUUG\n______________|||||||||||||\n______________AGCGCUGGUCAAC\n3'-UUU...ACUAG_____________UCACU...GUU-5'\n_____________|_____________|\n_____________48____________34\n |
21 -- 27 |
35 -- 41 |
-23.806 kcal/mol |
3.92504 kcal/mol |
3.68501 kcal/mol |
14 28@LB@ | |@LB@5'-CAA...CUCAG CUCAA...CGC-3'@LB@ UCGCGACCAGUUG@LB@ |||||||||||||@LB@ AGCGCUGGUCAAC@LB@3'-UUU...ACUAG UCACU...GUU-5'@LB@ | |@LB@ 48 34@LB@@LB@@LB@Energy -16.20 kcal/mol@LB@Hybridization Energy -23.806 kcal/mol@LB@Unfolding Energy - mRNA 3.92504 kcal/mol@LB@Unfolding Energy - sRNA 3.68501 kcal/mol@LB@@LB@Position - mRNA 15 -- 27@LB@Position - sRNA 35 -- 47@LB@Position Seed - mRNA 21 -- 27@LB@Position Seed - sRNA 35 -- 41@LB@ |
| 170 |
0.004404 |
0.117 |
pa0562 |
N/A |
-14.73 |
0.012303 |
222 -- 237 |
74 -- 91 |
hydrolase |
pa2067 |
_____________221________________238\n_____________|__________________|\n5'-AUC...ACGCA____UU____________ACGGC...CCU-3'\n______________CUGA____UCCGACUGCG\n______________||||____||||||||||\n______________GACU____AGGCUGACGC\n3'-UUU...UAUUA____UCUC__________ACCCA...GUU-5'\n_____________|__________________|\n_____________92_________________73\n |
231 -- 237 |
74 -- 80 |
-23.3949 kcal/mol |
2.784 kcal/mol |
5.88671 kcal/mol |
221 238@LB@ | |@LB@5'-AUC...ACGCA UU ACGGC...CCU-3'@LB@ CUGA UCCGACUGCG@LB@ |||| ||||||||||@LB@ GACU AGGCUGACGC@LB@3'-UUU...UAUUA UCUC ACCCA...GUU-5'@LB@ | |@LB@ 92 73@LB@@LB@@LB@Energy -14.73 kcal/mol@LB@Hybridization Energy -23.3949 kcal/mol@LB@Unfolding Energy - mRNA 2.784 kcal/mol@LB@Unfolding Energy - sRNA 5.88671 kcal/mol@LB@@LB@Position - mRNA 222 -- 237@LB@Position - sRNA 74 -- 91@LB@Position Seed - mRNA 231 -- 237@LB@Position Seed - sRNA 74 -- 80@LB@ |
