11 |
1.195e-05 |
0.004211 |
pa3638 |
N/A |
-14.67 |
0.012752 |
102 -- 115 |
100 -- 120 |
tRNA(Ile)-lysidine synthase |
|
_____________101___________________116\n_____________|_____________________|\n5'-GCG...GUUAC_____________________CUACG...CCA-3'\n______________GACC_______GCCUGAUGAG\n______________:|||_______||||||||||\n______________UUGG_______CGGACUACUC\n3'-UUU...AGUUU____CACUAAU__________CUCUA...GUU-5'\n_____________|_____________________|\n_____________121___________________99\n |
109 -- 115 |
100 -- 106 |
-19.8992 kcal/mol |
2.98005 kcal/mol |
2.24919 kcal/mol |
101 116@LB@ | |@LB@5'-GCG...GUUAC CUACG...CCA-3'@LB@ GACC GCCUGAUGAG@LB@ :||| ||||||||||@LB@ UUGG CGGACUACUC@LB@3'-UUU...AGUUU CACUAAU CUCUA...GUU-5'@LB@ | |@LB@ 121 99@LB@@LB@@LB@Energy -14.67 kcal/mol@LB@Hybridization Energy -19.8992 kcal/mol@LB@Unfolding Energy - mRNA 2.98005 kcal/mol@LB@Unfolding Energy - sRNA 2.24919 kcal/mol@LB@@LB@Position - mRNA 102 -- 115@LB@Position - sRNA 100 -- 120@LB@Position Seed - mRNA 109 -- 115@LB@Position Seed - sRNA 100 -- 106@LB@ |
12 |
1.22e-05 |
0.004211 |
pa3312 |
N/A |
-10.60 |
0.134070 |
231 -- 250 |
100 -- 119 |
3-hydroxyisobutyrate dehydrogenase |
|
_____________230__________________251\n_____________|____________________|\n5'-CGG...CCUUC____GUCUC___________CGUGC...UGU-3'\n______________GCCG_____GGCCUGAUGGG\n______________:|||_____:||||||||:|\n______________UGGC_____UCGGACUACUC\n3'-UUU...GUUUU____ACUAA___________CUCUA...GUU-5'\n_____________|____________________|\n_____________120__________________99\n |
244 -- 250 |
100 -- 106 |
-24.2186 kcal/mol |
11.3713 kcal/mol |
2.24903 kcal/mol |
230 251@LB@ | |@LB@5'-CGG...CCUUC GUCUC CGUGC...UGU-3'@LB@ GCCG GGCCUGAUGGG@LB@ :||| :||||||||:|@LB@ UGGC UCGGACUACUC@LB@3'-UUU...GUUUU ACUAA CUCUA...GUU-5'@LB@ | |@LB@ 120 99@LB@@LB@@LB@Energy -10.60 kcal/mol@LB@Hybridization Energy -24.2186 kcal/mol@LB@Unfolding Energy - mRNA 11.3713 kcal/mol@LB@Unfolding Energy - sRNA 2.24903 kcal/mol@LB@@LB@Position - mRNA 231 -- 250@LB@Position - sRNA 100 -- 119@LB@Position Seed - mRNA 244 -- 250@LB@Position Seed - sRNA 100 -- 106@LB@ |
13 |
1.26e-05 |
0.004211 |
pa3276 |
N/A |
-14.47 |
0.014594 |
182 -- 242 |
38 -- 108 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________181______________________________________________________________________243\n_____________|________________________________________________________________________|\n5'-CUU...UCCGU____UUCU____UACCC___U_________AUCCAUC_____A_______________C_____________CCGGG...ACA-3'\n______________UCUG____GGAG_____CUG_GGAGUCUGA________GUCU__________UGGCUG_AUC_CGCGACUGG\n______________:|||____||||_____|||_:|||||:||________||||__________:|||||_|||_||||||::|\n______________GGAC____CCUC_____GAC_UCUCAGGCU________CAGA__________GCCGAC_UAG_GCGCUGGUC\n3'-UUU...UAAUC____UACU____UAUUA___U_________GACGCACC____GAGUCGAAUG__________A_________AACUC...GUU-5'\n_____________|________________________________________________________________________|\n_____________109______________________________________________________________________37\n |
236 -- 242 |
38 -- 44 |
-54.8405 kcal/mol |
17.042 kcal/mol |
23.3354 kcal/mol |
181 243@LB@ | |@LB@5'-CUU...UCCGU UUCU UACCC U AUCCAUC A C CCGGG...ACA-3'@LB@ UCUG GGAG CUG GGAGUCUGA GUCU UGGCUG AUC CGCGACUGG@LB@ :||| |||| ||| :|||||:|| |||| :||||| ||| ||||||::|@LB@ GGAC CCUC GAC UCUCAGGCU CAGA GCCGAC UAG GCGCUGGUC@LB@3'-UUU...UAAUC UACU UAUUA U GACGCACC GAGUCGAAUG A AACUC...GUU-5'@LB@ | |@LB@ 109 37@LB@@LB@@LB@Energy -14.47 kcal/mol@LB@Hybridization Energy -54.8405 kcal/mol@LB@Unfolding Energy - mRNA 17.042 kcal/mol@LB@Unfolding Energy - sRNA 23.3354 kcal/mol@LB@@LB@Position - mRNA 182 -- 242@LB@Position - sRNA 38 -- 108@LB@Position Seed - mRNA 236 -- 242@LB@Position Seed - sRNA 38 -- 44@LB@ |
14 |
1.283e-05 |
0.004211 |
pa2953 |
N/A |
-15.00 |
0.010274 |
173 -- 195 |
95 -- 119 |
electron transfer flavoprotein-ubiquinone oxidoreductase |
|
_____________172________________________196\n_____________|__________________________|\n5'-CGG...CAGAU_____________U___GU_______CGAUA...CCG-3'\n______________ACCGUGA___GCC_UGA__AGGAGAU\n______________|||||||___|||_|||__|||||||\n______________UGGCACU___CGG_ACU__UCCUCUA\n3'-UUU...GUUUU_______AAU_______AC_______UUAGA...GUU-5'\n_____________|__________________________|\n_____________120________________________94\n |
189 -- 195 |
95 -- 101 |
-27.294 kcal/mol |
6.46266 kcal/mol |
5.83995 kcal/mol |
172 196@LB@ | |@LB@5'-CGG...CAGAU U GU CGAUA...CCG-3'@LB@ ACCGUGA GCC UGA AGGAGAU@LB@ ||||||| ||| ||| |||||||@LB@ UGGCACU CGG ACU UCCUCUA@LB@3'-UUU...GUUUU AAU AC UUAGA...GUU-5'@LB@ | |@LB@ 120 94@LB@@LB@@LB@Energy -15.00 kcal/mol@LB@Hybridization Energy -27.294 kcal/mol@LB@Unfolding Energy - mRNA 6.46266 kcal/mol@LB@Unfolding Energy - sRNA 5.83995 kcal/mol@LB@@LB@Position - mRNA 173 -- 195@LB@Position - sRNA 95 -- 119@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 95 -- 101@LB@ |
15 |
2.583e-05 |
0.007914 |
pa3049 |
rmf |
-22.33 |
0.000014 |
230 -- 282 |
40 -- 88 |
ribosome modulation factor |
|
_____________229____________________________________________________283\n_____________|______________________________________________________|\n5'-CGA...UUGGA________UU_U_______UUA__AGAA____AUA______AA___________UUUGU...AUC-3'\n______________AAGAG_CC__C_UGCGUGG___UC____CGGC___ACCGGU__AUCUCGUGAUC\n______________|||||_||__|_|||||||___||____|:||___|||||:__||||||:||:|\n______________UUCUC_GG__G_ACGCACC___AG____GUCG___UGGCCG__UAGAGCGCUGG\n3'-UUU...UAGAC_____A__CU_________CAG__A_______AA_______AC___________UCAAC...GUU-5'\n_____________|______________________________________________________|\n_____________89_____________________________________________________39\n |
276 -- 282 |
40 -- 46 |
-52.7199 kcal/mol |
11.3783 kcal/mol |
19.0139 kcal/mol |
229 283@LB@ | |@LB@5'-CGA...UUGGA UU U UUA AGAA AUA AA UUUGU...AUC-3'@LB@ AAGAG CC C UGCGUGG UC CGGC ACCGGU AUCUCGUGAUC@LB@ ||||| || | ||||||| || |:|| |||||: ||||||:||:|@LB@ UUCUC GG G ACGCACC AG GUCG UGGCCG UAGAGCGCUGG@LB@3'-UUU...UAGAC A CU CAG A AA AC UCAAC...GUU-5'@LB@ | |@LB@ 89 39@LB@@LB@@LB@Energy -22.33 kcal/mol@LB@Hybridization Energy -52.7199 kcal/mol@LB@Unfolding Energy - mRNA 11.3783 kcal/mol@LB@Unfolding Energy - sRNA 19.0139 kcal/mol@LB@@LB@Position - mRNA 230 -- 282@LB@Position - sRNA 40 -- 88@LB@Position Seed - mRNA 276 -- 282@LB@Position Seed - sRNA 40 -- 46@LB@ |
16 |
3.003e-05 |
0.008352 |
pa2689 |
N/A |
-17.00 |
0.002414 |
189 -- 205 |
100 -- 117 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________188________________206\n_____________|__________________|\n5'-CGG...CAUAA__A__A____________AACCU...UGG-3'\n______________CG_GA__AGCCUGAUGAG\n______________||_||__|||||||||||\n______________GC_CU__UCGGACUACUC\n3'-UUU...UUUUG__A__AA___________CUCUA...GUU-5'\n_____________|__________________|\n_____________118________________99\n |
199 -- 205 |
100 -- 106 |
-22.2469 kcal/mol |
3.0121 kcal/mol |
2.23711 kcal/mol |
188 206@LB@ | |@LB@5'-CGG...CAUAA A A AACCU...UGG-3'@LB@ CG GA AGCCUGAUGAG@LB@ || || |||||||||||@LB@ GC CU UCGGACUACUC@LB@3'-UUU...UUUUG A AA CUCUA...GUU-5'@LB@ | |@LB@ 118 99@LB@@LB@@LB@Energy -17.00 kcal/mol@LB@Hybridization Energy -22.2469 kcal/mol@LB@Unfolding Energy - mRNA 3.0121 kcal/mol@LB@Unfolding Energy - sRNA 2.23711 kcal/mol@LB@@LB@Position - mRNA 189 -- 205@LB@Position - sRNA 100 -- 117@LB@Position Seed - mRNA 199 -- 205@LB@Position Seed - sRNA 100 -- 106@LB@ |
17 |
3.089e-05 |
0.008352 |
pa5396 |
N/A |
-7.92 |
0.424136 |
180 -- 186 |
104 -- 110 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________179_____187\n_____________|_______|\n5'-CGC...CGCCC_______AAGGG...GCC-3'\n______________AGCCUGA\n______________|||||||\n______________UCGGACU\n3'-UUU...ACUAA_______ACUCC...GUU-5'\n_____________|_______|\n_____________111_____103\n |
180 -- 186 |
104 -- 110 |
-11.2317 kcal/mol |
1.21017 kcal/mol |
2.10482 kcal/mol |
179 187@LB@ | |@LB@5'-CGC...CGCCC AAGGG...GCC-3'@LB@ AGCCUGA@LB@ |||||||@LB@ UCGGACU@LB@3'-UUU...ACUAA ACUCC...GUU-5'@LB@ | |@LB@ 111 103@LB@@LB@@LB@Energy -7.92 kcal/mol@LB@Hybridization Energy -11.2317 kcal/mol@LB@Unfolding Energy - mRNA 1.21017 kcal/mol@LB@Unfolding Energy - sRNA 2.10482 kcal/mol@LB@@LB@Position - mRNA 180 -- 186@LB@Position - sRNA 104 -- 110@LB@Position Seed - mRNA 180 -- 186@LB@Position Seed - sRNA 104 -- 110@LB@ |
18 |
3.753e-05 |
0.009449 |
pa5036 |
gltB |
-9.24 |
0.251750 |
240 -- 259 |
103 -- 120 |
glutamate synthase subunit alpha |
|
_____________239__________________260\n_____________|____________________|\n5'-GAA...AGGAU_____CG__U__________CGCCC...AAA-3'\n______________AACUG__GA_UUGGCCUGAU\n______________|||:|__||_||:|||||||\n______________UUGGC__CU_AAUCGGACUA\n3'-UUU...AGUUU_____A______________CUCCU...GUU-5'\n_____________|____________________|\n_____________121__________________102\n |
253 -- 259 |
103 -- 109 |
-18.8705 kcal/mol |
7.38825 kcal/mol |
2.24268 kcal/mol |
239 260@LB@ | |@LB@5'-GAA...AGGAU CG U CGCCC...AAA-3'@LB@ AACUG GA UUGGCCUGAU@LB@ |||:| || ||:|||||||@LB@ UUGGC CU AAUCGGACUA@LB@3'-UUU...AGUUU A CUCCU...GUU-5'@LB@ | |@LB@ 121 102@LB@@LB@@LB@Energy -9.24 kcal/mol@LB@Hybridization Energy -18.8705 kcal/mol@LB@Unfolding Energy - mRNA 7.38825 kcal/mol@LB@Unfolding Energy - sRNA 2.24268 kcal/mol@LB@@LB@Position - mRNA 240 -- 259@LB@Position - sRNA 103 -- 120@LB@Position Seed - mRNA 253 -- 259@LB@Position Seed - sRNA 103 -- 109@LB@ |
19 |
3.906e-05 |
0.009449 |
pa0443 |
N/A |
-14.62 |
0.013168 |
152 -- 204 |
75 -- 119 |
transporter |
|
_____________151______________________________________________________205\n_____________|________________________________________________________|\n5'-UUG...CGGCC____C________C______C_______CUAAAAGAAU_________G__CA____AACAG...UCG-3'\n______________AUCG__AUUAGCC_GAUGAG_GA_AUAA__________UCUGGAGAG_CC___UGC\n______________|:||__|||||||_||||||_||_||||__________||||:||||_||___|||\n______________UGGC__UAAUCGG_CUACUC_CU_UAUU__________AGACUUCUC_GG___ACG\n3'-UUU...GUUUU____AC_______A_________C_______________________A__CUG___CACCC...GUU-5'\n_____________|________________________________________________________|\n_____________120______________________________________________________74\n |
190 -- 196 |
84 -- 90 |
-39.3471 kcal/mol |
12.5408 kcal/mol |
12.1884 kcal/mol |
151 205@LB@ | |@LB@5'-UUG...CGGCC C C C CUAAAAGAAU G CA AACAG...UCG-3'@LB@ AUCG AUUAGCC GAUGAG GA AUAA UCUGGAGAG CC UGC@LB@ |:|| ||||||| |||||| || |||| ||||:|||| || |||@LB@ UGGC UAAUCGG CUACUC CU UAUU AGACUUCUC GG ACG@LB@3'-UUU...GUUUU AC A C A CUG CACCC...GUU-5'@LB@ | |@LB@ 120 74@LB@@LB@@LB@Energy -14.62 kcal/mol@LB@Hybridization Energy -39.3471 kcal/mol@LB@Unfolding Energy - mRNA 12.5408 kcal/mol@LB@Unfolding Energy - sRNA 12.1884 kcal/mol@LB@@LB@Position - mRNA 152 -- 204@LB@Position - sRNA 75 -- 119@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 84 -- 90@LB@ |
20 |
4.966e-05 |
0.01105 |
pa5388 |
N/A |
-18.86 |
0.000517 |
168 -- 251 |
37 -- 123 |
'Product name confidence: class 4:Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences.' |
pa3236 pa0030 pa5378 |
_____________167________________________________________________________________________________________252\n_____________|__________________________________________________________________________________________|\n5'-GGG...CGCAG______AAUCAA_____GCAC_______GACCGA______CGA________CCAG_____G____GC___CU__________________GGCGC...UGG-3'\n______________AAAAAC______UAGCC____GAGGGGA______UGAAGA___CGAUU_CG_______CU_GGCU__GCC__GCUGAUC_C_UGGCCAGU\n______________||||||______|||||____||||:||______||||||___|||:|_||_______||_:|||__:||__|||||||_|_:|:|||||\n______________UUUUUG______AUCGG____CUCCUCU______ACUUCU___GCUGA_GC_______GA_UCGA__UGG__CGACUAG_G_GCUGGUCA\n3'-UUU...CCCAG______GCACUA_____ACUA_______AUUAG_______CAG_____C__ACCCAGA__G____A____C________A_C________ACUCA...GUU-5'\n_____________|__________________________________________________________________________________________|\n_____________124________________________________________________________________________________________36\n |
245 -- 251 |
37 -- 43 |
-69.2339 kcal/mol |
26.9773 kcal/mol |
23.4067 kcal/mol |
167 252@LB@ | |@LB@5'-GGG...CGCAG AAUCAA GCAC GACCGA CGA CCAG G GC CU GGCGC...UGG-3'@LB@ AAAAAC UAGCC GAGGGGA UGAAGA CGAUU CG CU GGCU GCC GCUGAUC C UGGCCAGU@LB@ |||||| ||||| ||||:|| |||||| |||:| || || :||| :|| ||||||| | :|:|||||@LB@ UUUUUG AUCGG CUCCUCU ACUUCU GCUGA GC GA UCGA UGG CGACUAG G GCUGGUCA@LB@3'-UUU...CCCAG GCACUA ACUA AUUAG CAG C ACCCAGA G A C A C ACUCA...GUU-5'@LB@ | |@LB@ 124 36@LB@@LB@@LB@Energy -18.86 kcal/mol@LB@Hybridization Energy -69.2339 kcal/mol@LB@Unfolding Energy - mRNA 26.9773 kcal/mol@LB@Unfolding Energy - sRNA 23.4067 kcal/mol@LB@@LB@Position - mRNA 168 -- 251@LB@Position - sRNA 37 -- 123@LB@Position Seed - mRNA 245 -- 251@LB@Position Seed - sRNA 37 -- 43@LB@ |