| 101 |
0.001673 |
0.07499 |
pa1787 |
acnB |
-10.32 |
0.154094 |
277 -- 296 |
100 -- 121 |
aconitate hydratase B |
|
_____________276_____________________297\n_____________|_______________________|\n5'-UAC...CGAAC______CA___________C___CUGC-3'\n______________AGACCG_____GGCCUGGU_GAG\n______________|:||||_____:|||||:|_|||\n______________UUUGGC_____UCGGACUA_CUC\n3'-UUU...CAGUU______ACUAA____________CUCUA...GUU-5'\n_____________|_______________________|\n_____________122_____________________99\n |
286 -- 292 |
103 -- 109 |
-20.0253 kcal/mol |
7.46245 kcal/mol |
2.24936 kcal/mol |
276 297@LB@ | |@LB@5'-UAC...CGAAC CA C CUGC-3'@LB@ AGACCG GGCCUGGU GAG@LB@ |:|||| :|||||:| |||@LB@ UUUGGC UCGGACUA CUC@LB@3'-UUU...CAGUU ACUAA CUCUA...GUU-5'@LB@ | |@LB@ 122 99@LB@@LB@@LB@Energy -10.32 kcal/mol@LB@Hybridization Energy -20.0253 kcal/mol@LB@Unfolding Energy - mRNA 7.46245 kcal/mol@LB@Unfolding Energy - sRNA 2.24936 kcal/mol@LB@@LB@Position - mRNA 277 -- 296@LB@Position - sRNA 100 -- 121@LB@Position Seed - mRNA 286 -- 292@LB@Position Seed - sRNA 103 -- 109@LB@ |
| 102 |
0.001679 |
0.07499 |
pa2657 |
N/A |
-10.65 |
0.130856 |
243 -- 261 |
104 -- 121 |
two-component response regulator |
|
_____________242_________________262\n_____________|___________________|\n5'-GGU...CCGAC______A___CC_______CCCGC...GCC-3'\n______________GAACUG_UGG__AGCCUGA\n______________:|||:|_||:__|||||||\n______________UUUGGC_ACU__UCGGACU\n3'-UUU...CAGUU__________AA_______ACUCC...GUU-5'\n_____________|___________________|\n_____________122_________________103\n |
255 -- 261 |
104 -- 110 |
-18.2987 kcal/mol |
5.4095 kcal/mol |
2.24203 kcal/mol |
242 262@LB@ | |@LB@5'-GGU...CCGAC A CC CCCGC...GCC-3'@LB@ GAACUG UGG AGCCUGA@LB@ :|||:| ||: |||||||@LB@ UUUGGC ACU UCGGACU@LB@3'-UUU...CAGUU AA ACUCC...GUU-5'@LB@ | |@LB@ 122 103@LB@@LB@@LB@Energy -10.65 kcal/mol@LB@Hybridization Energy -18.2987 kcal/mol@LB@Unfolding Energy - mRNA 5.4095 kcal/mol@LB@Unfolding Energy - sRNA 2.24203 kcal/mol@LB@@LB@Position - mRNA 243 -- 261@LB@Position - sRNA 104 -- 121@LB@Position Seed - mRNA 255 -- 261@LB@Position Seed - sRNA 104 -- 110@LB@ |
| 103 |
0.001681 |
0.07499 |
pa3587 |
metR |
-12.26 |
0.055812 |
244 -- 261 |
101 -- 121 |
transcriptional regulator MetR |
|
_____________243___________________262\n_____________|_____________________|\n5'-CAG...GCGCG______AC_____________AAGCC...UGU-3'\n______________AAGCCG_____AGCCUGGUGG\n______________||:|||_____||||||:||:\n______________UUUGGC_____UCGGACUACU\n3'-UUU...CAGUU______ACUAA__________CCUCU...GUU-5'\n_____________|_____________________|\n_____________122___________________100\n |
255 -- 261 |
101 -- 107 |
-20.5431 kcal/mol |
6.04584 kcal/mol |
2.24386 kcal/mol |
243 262@LB@ | |@LB@5'-CAG...GCGCG AC AAGCC...UGU-3'@LB@ AAGCCG AGCCUGGUGG@LB@ ||:||| ||||||:||:@LB@ UUUGGC UCGGACUACU@LB@3'-UUU...CAGUU ACUAA CCUCU...GUU-5'@LB@ | |@LB@ 122 100@LB@@LB@@LB@Energy -12.26 kcal/mol@LB@Hybridization Energy -20.5431 kcal/mol@LB@Unfolding Energy - mRNA 6.04584 kcal/mol@LB@Unfolding Energy - sRNA 2.24386 kcal/mol@LB@@LB@Position - mRNA 244 -- 261@LB@Position - sRNA 101 -- 121@LB@Position Seed - mRNA 255 -- 261@LB@Position Seed - sRNA 101 -- 107@LB@ |
| 104 |
0.00171 |
0.07531 |
pa4333 |
N/A |
-8.52 |
0.338548 |
151 -- 157 |
40 -- 46 |
fumarase |
|
_____________150_____158\n_____________|_______|\n5'-UAG...GGCUC_______CUGCC...AUG-3'\n______________CGUGACC\n______________||:||||\n______________GCGCUGG\n3'-UUU...CUAGA_______UCAAC...GUU-5'\n_____________|_______|\n_____________47______39\n |
151 -- 157 |
40 -- 46 |
-12.3245 kcal/mol |
0.149051 kcal/mol |
3.65718 kcal/mol |
150 158@LB@ | |@LB@5'-UAG...GGCUC CUGCC...AUG-3'@LB@ CGUGACC@LB@ ||:||||@LB@ GCGCUGG@LB@3'-UUU...CUAGA UCAAC...GUU-5'@LB@ | |@LB@ 47 39@LB@@LB@@LB@Energy -8.52 kcal/mol@LB@Hybridization Energy -12.3245 kcal/mol@LB@Unfolding Energy - mRNA 0.149051 kcal/mol@LB@Unfolding Energy - sRNA 3.65718 kcal/mol@LB@@LB@Position - mRNA 151 -- 157@LB@Position - sRNA 40 -- 46@LB@Position Seed - mRNA 151 -- 157@LB@Position Seed - sRNA 40 -- 46@LB@ |
| 105 |
0.00174 |
0.07531 |
pa4182 |
N/A |
-13.56 |
0.025913 |
222 -- 265 |
39 -- 89 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________221__________________________________________________266\n_____________|____________________________________________________|\n5'-ACG...AUUUC____________C___CA____________GCA__C__________G_____UCCGC...CGG-3'\n______________GAAGAGUCCGAC__CG__GG_C_____GCU___CG_GCUGAUC_CG_GACUA\n______________||||||||||||__||__||_|_____|||___||_|||||||_||_|||:|\n______________CUUCUCAGGCUG__GC__CC_G_____CGA___GC_CGACUAG_GC_CUGGU\n3'-UUU...UUAGA____________AC__AC__A_AGAGU___AUG__________A__G_____CAACU...GUU-5'\n_____________|____________________________________________________|\n_____________90___________________________________________________38\n |
251 -- 257 |
48 -- 54 |
-52.115 kcal/mol |
19.5257 kcal/mol |
19.0319 kcal/mol |
221 266@LB@ | |@LB@5'-ACG...AUUUC C CA GCA C G UCCGC...CGG-3'@LB@ GAAGAGUCCGAC CG GG C GCU CG GCUGAUC CG GACUA@LB@ |||||||||||| || || | ||| || ||||||| || |||:|@LB@ CUUCUCAGGCUG GC CC G CGA GC CGACUAG GC CUGGU@LB@3'-UUU...UUAGA AC AC A AGAGU AUG A G CAACU...GUU-5'@LB@ | |@LB@ 90 38@LB@@LB@@LB@Energy -13.56 kcal/mol@LB@Hybridization Energy -52.115 kcal/mol@LB@Unfolding Energy - mRNA 19.5257 kcal/mol@LB@Unfolding Energy - sRNA 19.0319 kcal/mol@LB@@LB@Position - mRNA 222 -- 265@LB@Position - sRNA 39 -- 89@LB@Position Seed - mRNA 251 -- 257@LB@Position Seed - sRNA 48 -- 54@LB@ |
| 106 |
0.001743 |
0.07531 |
pa4019 |
N/A |
-13.63 |
0.024857 |
269 -- 289 |
98 -- 119 |
aromatic acid decarboxylase |
|
_____________268_____________________290\n_____________|_______________________|\n5'-CCG...CGCUU___C______________C____AGAGC...AGG-3'\n______________GCU__GAUU_GCCUGGUG_AGGA\n______________:|:__||||_|||||:||_||||\n______________UGG__CUAA_CGGACUAC_UCCU\n3'-UUU...GUUUU___CA____U_____________CUAUU...GUU-5'\n_____________|_______________________|\n_____________120_____________________97\n |
278 -- 284 |
102 -- 108 |
-22.0172 kcal/mol |
6.14115 kcal/mol |
2.25153 kcal/mol |
268 290@LB@ | |@LB@5'-CCG...CGCUU C C AGAGC...AGG-3'@LB@ GCU GAUU GCCUGGUG AGGA@LB@ :|: |||| |||||:|| ||||@LB@ UGG CUAA CGGACUAC UCCU@LB@3'-UUU...GUUUU CA U CUAUU...GUU-5'@LB@ | |@LB@ 120 97@LB@@LB@@LB@Energy -13.63 kcal/mol@LB@Hybridization Energy -22.0172 kcal/mol@LB@Unfolding Energy - mRNA 6.14115 kcal/mol@LB@Unfolding Energy - sRNA 2.25153 kcal/mol@LB@@LB@Position - mRNA 269 -- 289@LB@Position - sRNA 98 -- 119@LB@Position Seed - mRNA 278 -- 284@LB@Position Seed - sRNA 102 -- 108@LB@ |
| 107 |
0.001753 |
0.07531 |
pa3707 |
N/A |
-15.86 |
0.005654 |
190 -- 241 |
38 -- 85 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________189____________________________________________________242\n_____________|______________________________________________________|\n5'-GCC...UUCAA_____GA_______ACC__G____C___CC___________A___A__C_____CAAGC...AAG-3'\n______________AGUCU__GGCUGUG___GU_UC_C_GCU__ACCGGC_GAUC_UCG_CG_ACCAG\n______________||||:__|:|||:|___||_||_|_|||__||||||_||||_|||_||_|||||\n______________UCAGG__CUGACGC___CA_AG_G_CGA__UGGCCG_CUAG_AGC_GC_UGGUC\n3'-UUU...ACUUC______________ACC__G__A_U___A_______A_________________AACUC...GUU-5'\n_____________|______________________________________________________|\n_____________86_____________________________________________________37\n |
197 -- 203 |
74 -- 80 |
-51.3304 kcal/mol |
16.52 kcal/mol |
18.9581 kcal/mol |
189 242@LB@ | |@LB@5'-GCC...UUCAA GA ACC G C CC A A C CAAGC...AAG-3'@LB@ AGUCU GGCUGUG GU UC C GCU ACCGGC GAUC UCG CG ACCAG@LB@ ||||: |:|||:| || || | ||| |||||| |||| ||| || |||||@LB@ UCAGG CUGACGC CA AG G CGA UGGCCG CUAG AGC GC UGGUC@LB@3'-UUU...ACUUC ACC G A U A A AACUC...GUU-5'@LB@ | |@LB@ 86 37@LB@@LB@@LB@Energy -15.86 kcal/mol@LB@Hybridization Energy -51.3304 kcal/mol@LB@Unfolding Energy - mRNA 16.52 kcal/mol@LB@Unfolding Energy - sRNA 18.9581 kcal/mol@LB@@LB@Position - mRNA 190 -- 241@LB@Position - sRNA 38 -- 85@LB@Position Seed - mRNA 197 -- 203@LB@Position Seed - sRNA 74 -- 80@LB@ |
| 108 |
0.001802 |
0.07562 |
pa0365 |
N/A |
-14.54 |
0.013920 |
243 -- 252 |
101 -- 110 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________242________253\n_____________|__________|\n5'-GCC...GACGC__________AAGUC...CCG-3'\n______________AGCCUGAUGA\n______________||||||||||\n______________UCGGACUACU\n3'-UUU...ACUAA__________CCUCU...GUU-5'\n_____________|__________|\n_____________111________100\n |
246 -- 252 |
101 -- 107 |
-17.5523 kcal/mol |
0.900236 kcal/mol |
2.11196 kcal/mol |
242 253@LB@ | |@LB@5'-GCC...GACGC AAGUC...CCG-3'@LB@ AGCCUGAUGA@LB@ ||||||||||@LB@ UCGGACUACU@LB@3'-UUU...ACUAA CCUCU...GUU-5'@LB@ | |@LB@ 111 100@LB@@LB@@LB@Energy -14.54 kcal/mol@LB@Hybridization Energy -17.5523 kcal/mol@LB@Unfolding Energy - mRNA 0.900236 kcal/mol@LB@Unfolding Energy - sRNA 2.11196 kcal/mol@LB@@LB@Position - mRNA 243 -- 252@LB@Position - sRNA 101 -- 110@LB@Position Seed - mRNA 246 -- 252@LB@Position Seed - sRNA 101 -- 107@LB@ |
| 109 |
0.001808 |
0.07562 |
pa0202 |
N/A |
-7.70 |
0.456423 |
178 -- 185 |
75 -- 82 |
amidase |
pa4342 |
_____________177______186\n_____________|________|\n5'-CCC...CCUUC________CAAGG...UGC-3'\n______________UCGACUGC\n______________:|||||||\n______________GGCUGACG\n3'-UUU...UCUCA________CACCC...GUU-5'\n_____________|________|\n_____________83_______74\n |
179 -- 185 |
75 -- 81 |
-13.4138 kcal/mol |
1.61599 kcal/mol |
4.09516 kcal/mol |
177 186@LB@ | |@LB@5'-CCC...CCUUC CAAGG...UGC-3'@LB@ UCGACUGC@LB@ :|||||||@LB@ GGCUGACG@LB@3'-UUU...UCUCA CACCC...GUU-5'@LB@ | |@LB@ 83 74@LB@@LB@@LB@Energy -7.70 kcal/mol@LB@Hybridization Energy -13.4138 kcal/mol@LB@Unfolding Energy - mRNA 1.61599 kcal/mol@LB@Unfolding Energy - sRNA 4.09516 kcal/mol@LB@@LB@Position - mRNA 178 -- 185@LB@Position - sRNA 75 -- 82@LB@Position Seed - mRNA 179 -- 185@LB@Position Seed - sRNA 75 -- 81@LB@ |
| 110 |
0.00181 |
0.07562 |
pa2449 |
N/A |
-19.06 |
0.000430 |
48 -- 69 |
99 -- 122 |
transcriptional regulator |
|
_____________47_______________________70\n_____________|________________________|\n5'-UGC...UGACC___________________C____GCGAC...UGG-3'\n______________GAAACCGUGAU_GGCC_GA_GAGG\n______________:||||||||||_:|||_||_||||\n______________UUUUGGCACUA_UCGG_CU_CUCC\n3'-UUU...CCAGU___________A____A__A____UCUAU...GUU-5'\n_____________|________________________|\n_____________123______________________98\n |
52 -- 58 |
112 -- 118 |
-29.2814 kcal/mol |
7.97339 kcal/mol |
2.25034 kcal/mol |
47 70@LB@ | |@LB@5'-UGC...UGACC C GCGAC...UGG-3'@LB@ GAAACCGUGAU GGCC GA GAGG@LB@ :|||||||||| :||| || ||||@LB@ UUUUGGCACUA UCGG CU CUCC@LB@3'-UUU...CCAGU A A A UCUAU...GUU-5'@LB@ | |@LB@ 123 98@LB@@LB@@LB@Energy -19.06 kcal/mol@LB@Hybridization Energy -29.2814 kcal/mol@LB@Unfolding Energy - mRNA 7.97339 kcal/mol@LB@Unfolding Energy - sRNA 2.25034 kcal/mol@LB@@LB@Position - mRNA 48 -- 69@LB@Position - sRNA 99 -- 122@LB@Position Seed - mRNA 52 -- 58@LB@Position Seed - sRNA 112 -- 118@LB@ |
