171 |
0.004404 |
0.117 |
pa3327 |
N/A |
-14.55 |
0.013827 |
159 -- 238 |
39 -- 118 |
non-ribosomal peptide synthetase |
|
_____________158_______________________________________________________________________________________239\n_____________|_________________________________________________________________________________________|\n5'-AUU...GGUGC________C___GA__C__U___UUG___________GA____A_G_A___UUC_____G_UC___________A_______CCU____ACGGG...GCU-3'\n______________CCGUG_UU_GCC__AU_GA_GGA______UUGAAGAG__CG_C_G_G_UGG___GUUUC_C__GCUUGCC_GCU____UCGC___ACCA\n______________|||||_||_|||__||_||_|||______:|||||||__||_|_|_|_|||___||:||_|__||||:||_|||____||||___||||\n______________GGCAC_AA_CGG__UA_CU_CCU______GACUUCUC__GC_G_C_C_ACC___CAGAG_G__CGAAUGG_CGA____AGCG___UGGU\n3'-UUU...UUUUU_____U__U___AC_________CUAUUA________AG__U_A_G_____________A_U________C___CUAG____C______CAACU...GUU-5'\n_____________|_________________________________________________________________________________________|\n_____________119_______________________________________________________________________________________38\n |
217 -- 223 |
56 -- 62 |
-61.1953 kcal/mol |
23.2465 kcal/mol |
23.4063 kcal/mol |
158 239@LB@ | |@LB@5'-AUU...GGUGC C GA C U UUG GA A G A UUC G UC A CCU ACGGG...GCU-3'@LB@ CCGUG UU GCC AU GA GGA UUGAAGAG CG C G G UGG GUUUC C GCUUGCC GCU UCGC ACCA@LB@ ||||| || ||| || || ||| :||||||| || | | | ||| ||:|| | ||||:|| ||| |||| ||||@LB@ GGCAC AA CGG UA CU CCU GACUUCUC GC G C C ACC CAGAG G CGAAUGG CGA AGCG UGGU@LB@3'-UUU...UUUUU U U AC CUAUUA AG U A G A U C CUAG C CAACU...GUU-5'@LB@ | |@LB@ 119 38@LB@@LB@@LB@Energy -14.55 kcal/mol@LB@Hybridization Energy -61.1953 kcal/mol@LB@Unfolding Energy - mRNA 23.2465 kcal/mol@LB@Unfolding Energy - sRNA 23.4063 kcal/mol@LB@@LB@Position - mRNA 159 -- 238@LB@Position - sRNA 39 -- 118@LB@Position Seed - mRNA 217 -- 223@LB@Position Seed - sRNA 56 -- 62@LB@ |
172 |
0.004404 |
0.117 |
pa3327 |
N/A |
-14.55 |
0.013827 |
159 -- 238 |
39 -- 118 |
non-ribosomal peptide synthetase |
|
_____________158_______________________________________________________________________________________239\n_____________|_________________________________________________________________________________________|\n5'-AUU...GGUGC________C___GA__C__U___UUG___________GA____A_G_A___UUC_____G_UC___________A_______CCU____ACGGG...GCU-3'\n______________CCGUG_UU_GCC__AU_GA_GGA______UUGAAGAG__CG_C_G_G_UGG___GUUUC_C__GCUUGCC_GCU____UCGC___ACCA\n______________|||||_||_|||__||_||_|||______:|||||||__||_|_|_|_|||___||:||_|__||||:||_|||____||||___||||\n______________GGCAC_AA_CGG__UA_CU_CCU______GACUUCUC__GC_G_C_C_ACC___CAGAG_G__CGAAUGG_CGA____AGCG___UGGU\n3'-UUU...UUUUU_____U__U___AC_________CUAUUA________AG__U_A_G_____________A_U________C___CUAG____C______CAACU...GUU-5'\n_____________|_________________________________________________________________________________________|\n_____________119_______________________________________________________________________________________38\n |
217 -- 223 |
56 -- 62 |
-61.1953 kcal/mol |
23.2465 kcal/mol |
23.4063 kcal/mol |
158 239@LB@ | |@LB@5'-AUU...GGUGC C GA C U UUG GA A G A UUC G UC A CCU ACGGG...GCU-3'@LB@ CCGUG UU GCC AU GA GGA UUGAAGAG CG C G G UGG GUUUC C GCUUGCC GCU UCGC ACCA@LB@ ||||| || ||| || || ||| :||||||| || | | | ||| ||:|| | ||||:|| ||| |||| ||||@LB@ GGCAC AA CGG UA CU CCU GACUUCUC GC G C C ACC CAGAG G CGAAUGG CGA AGCG UGGU@LB@3'-UUU...UUUUU U U AC CUAUUA AG U A G A U C CUAG C CAACU...GUU-5'@LB@ | |@LB@ 119 38@LB@@LB@@LB@Energy -14.55 kcal/mol@LB@Hybridization Energy -61.1953 kcal/mol@LB@Unfolding Energy - mRNA 23.2465 kcal/mol@LB@Unfolding Energy - sRNA 23.4063 kcal/mol@LB@@LB@Position - mRNA 159 -- 238@LB@Position - sRNA 39 -- 118@LB@Position Seed - mRNA 217 -- 223@LB@Position Seed - sRNA 56 -- 62@LB@ |
173 |
0.004404 |
0.117 |
pa3327 |
N/A |
-14.55 |
0.013827 |
159 -- 238 |
39 -- 118 |
non-ribosomal peptide synthetase |
|
_____________158_______________________________________________________________________________________239\n_____________|_________________________________________________________________________________________|\n5'-AUU...GGUGC________C___GA__C__U___UUG___________GA____A_G_A___UUC_____G_UC___________A_______CCU____ACGGG...GCU-3'\n______________CCGUG_UU_GCC__AU_GA_GGA______UUGAAGAG__CG_C_G_G_UGG___GUUUC_C__GCUUGCC_GCU____UCGC___ACCA\n______________|||||_||_|||__||_||_|||______:|||||||__||_|_|_|_|||___||:||_|__||||:||_|||____||||___||||\n______________GGCAC_AA_CGG__UA_CU_CCU______GACUUCUC__GC_G_C_C_ACC___CAGAG_G__CGAAUGG_CGA____AGCG___UGGU\n3'-UUU...UUUUU_____U__U___AC_________CUAUUA________AG__U_A_G_____________A_U________C___CUAG____C______CAACU...GUU-5'\n_____________|_________________________________________________________________________________________|\n_____________119_______________________________________________________________________________________38\n |
217 -- 223 |
56 -- 62 |
-61.1953 kcal/mol |
23.2465 kcal/mol |
23.4063 kcal/mol |
158 239@LB@ | |@LB@5'-AUU...GGUGC C GA C U UUG GA A G A UUC G UC A CCU ACGGG...GCU-3'@LB@ CCGUG UU GCC AU GA GGA UUGAAGAG CG C G G UGG GUUUC C GCUUGCC GCU UCGC ACCA@LB@ ||||| || ||| || || ||| :||||||| || | | | ||| ||:|| | ||||:|| ||| |||| ||||@LB@ GGCAC AA CGG UA CU CCU GACUUCUC GC G C C ACC CAGAG G CGAAUGG CGA AGCG UGGU@LB@3'-UUU...UUUUU U U AC CUAUUA AG U A G A U C CUAG C CAACU...GUU-5'@LB@ | |@LB@ 119 38@LB@@LB@@LB@Energy -14.55 kcal/mol@LB@Hybridization Energy -61.1953 kcal/mol@LB@Unfolding Energy - mRNA 23.2465 kcal/mol@LB@Unfolding Energy - sRNA 23.4063 kcal/mol@LB@@LB@Position - mRNA 159 -- 238@LB@Position - sRNA 39 -- 118@LB@Position Seed - mRNA 217 -- 223@LB@Position Seed - sRNA 56 -- 62@LB@ |
174 |
0.00444 |
0.1171 |
pa4756 |
carB |
-14.46 |
0.014655 |
252 -- 264 |
107 -- 119 |
carbamoyl phosphate synthase large subunit |
|
_____________251___________265\n_____________|_____________|\n5'-GGU...GCCCC_____________AGGCC...CCU-3'\n______________AUCGUGAUUGGCC\n______________|:|||||||:|||\n______________UGGCACUAAUCGG\n3'-UUU...GUUUU_____________ACUAC...GUU-5'\n_____________|_____________|\n_____________120___________106\n |
258 -- 264 |
107 -- 113 |
-20.5807 kcal/mol |
3.88907 kcal/mol |
2.23484 kcal/mol |
251 265@LB@ | |@LB@5'-GGU...GCCCC AGGCC...CCU-3'@LB@ AUCGUGAUUGGCC@LB@ |:|||||||:|||@LB@ UGGCACUAAUCGG@LB@3'-UUU...GUUUU ACUAC...GUU-5'@LB@ | |@LB@ 120 106@LB@@LB@@LB@Energy -14.46 kcal/mol@LB@Hybridization Energy -20.5807 kcal/mol@LB@Unfolding Energy - mRNA 3.88907 kcal/mol@LB@Unfolding Energy - sRNA 2.23484 kcal/mol@LB@@LB@Position - mRNA 252 -- 264@LB@Position - sRNA 107 -- 119@LB@Position Seed - mRNA 258 -- 264@LB@Position Seed - sRNA 107 -- 113@LB@ |
175 |
0.004467 |
0.1171 |
pa2047 |
N/A |
-7.63 |
0.467709 |
171 -- 177 |
103 -- 109 |
transcriptional regulator |
|
_____________170_____178\n_____________|_______|\n5'-CCC...UGCUU_______CCUGC...CCG-3'\n______________GCCUGAU\n______________|||||||\n______________CGGACUA\n3'-UUU...CUAAU_______CUCCU...GUU-5'\n_____________|_______|\n_____________110_____102\n |
171 -- 177 |
103 -- 109 |
-11.5321 kcal/mol |
1.79595 kcal/mol |
2.10421 kcal/mol |
170 178@LB@ | |@LB@5'-CCC...UGCUU CCUGC...CCG-3'@LB@ GCCUGAU@LB@ |||||||@LB@ CGGACUA@LB@3'-UUU...CUAAU CUCCU...GUU-5'@LB@ | |@LB@ 110 102@LB@@LB@@LB@Energy -7.63 kcal/mol@LB@Hybridization Energy -11.5321 kcal/mol@LB@Unfolding Energy - mRNA 1.79595 kcal/mol@LB@Unfolding Energy - sRNA 2.10421 kcal/mol@LB@@LB@Position - mRNA 171 -- 177@LB@Position - sRNA 103 -- 109@LB@Position Seed - mRNA 171 -- 177@LB@Position Seed - sRNA 103 -- 109@LB@ |
176 |
0.004483 |
0.1171 |
pa1774 |
crfX |
-11.59 |
0.080592 |
153 -- 172 |
96 -- 117 |
Product name confidence: class 1: Function experimentally demonstrated in P. aeruginosa |
|
_____________152______________________173\n_____________|________________________|\n5'-UGC...UCUGA_____________GA_________GGGCG...AGA-3'\n______________CGUGA____CCUG__GUGAGGAGA\n______________|||||____||||__:||||||||\n______________GCACU____GGAC__UACUCCUCU\n3'-UUU...UUUUG_____AAUC_______________AUUAG...GUU-5'\n_____________|________________________|\n_____________118______________________95\n |
166 -- 172 |
96 -- 102 |
-24.6679 kcal/mol |
7.55062 kcal/mol |
5.53547 kcal/mol |
152 173@LB@ | |@LB@5'-UGC...UCUGA GA GGGCG...AGA-3'@LB@ CGUGA CCUG GUGAGGAGA@LB@ ||||| |||| :||||||||@LB@ GCACU GGAC UACUCCUCU@LB@3'-UUU...UUUUG AAUC AUUAG...GUU-5'@LB@ | |@LB@ 118 95@LB@@LB@@LB@Energy -11.59 kcal/mol@LB@Hybridization Energy -24.6679 kcal/mol@LB@Unfolding Energy - mRNA 7.55062 kcal/mol@LB@Unfolding Energy - sRNA 5.53547 kcal/mol@LB@@LB@Position - mRNA 153 -- 172@LB@Position - sRNA 96 -- 117@LB@Position Seed - mRNA 166 -- 172@LB@Position Seed - sRNA 96 -- 102@LB@ |
177 |
0.004514 |
0.1172 |
pa4639 |
N/A |
-11.28 |
0.094804 |
222 -- 231 |
101 -- 110 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________221________232\n_____________|__________|\n5'-GUC...UGCUC__________CCGCA...UUA-3'\n______________AGCCUGAUGA\n______________||||||||||\n______________UCGGACUACU\n3'-UUU...ACUAA__________CCUCU...GUU-5'\n_____________|__________|\n_____________111________100\n |
225 -- 231 |
101 -- 107 |
-16.5496 kcal/mol |
3.15503 kcal/mol |
2.11196 kcal/mol |
221 232@LB@ | |@LB@5'-GUC...UGCUC CCGCA...UUA-3'@LB@ AGCCUGAUGA@LB@ ||||||||||@LB@ UCGGACUACU@LB@3'-UUU...ACUAA CCUCU...GUU-5'@LB@ | |@LB@ 111 100@LB@@LB@@LB@Energy -11.28 kcal/mol@LB@Hybridization Energy -16.5496 kcal/mol@LB@Unfolding Energy - mRNA 3.15503 kcal/mol@LB@Unfolding Energy - sRNA 2.11196 kcal/mol@LB@@LB@Position - mRNA 222 -- 231@LB@Position - sRNA 101 -- 110@LB@Position Seed - mRNA 225 -- 231@LB@Position Seed - sRNA 101 -- 107@LB@ |
178 |
0.004573 |
0.1181 |
pa0900 |
N/A |
-12.48 |
0.049102 |
209 -- 242 |
75 -- 111 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________208___________________________________243\n_____________|_____________________________________|\n5'-UCC...UCCGA_______CAACU_____CC________UA_____G__ACCCA...UGU-3'\n______________UAGCCUG_______GAU__UC_GAAGA__CCGAC_GC\n______________|||||||_______|||__||_|||||__|||||_||\n______________AUCGGAC_______CUA__AG_CUUCU__GGCUG_CG\n3'-UUU...CACUA_______UACUCCU___UU__A_____CA_____A__CACCC...GUU-5'\n_____________|_____________________________________|\n_____________112___________________________________74\n |
209 -- 215 |
105 -- 111 |
-29.9732 kcal/mol |
5.9478 kcal/mol |
11.5432 kcal/mol |
208 243@LB@ | |@LB@5'-UCC...UCCGA CAACU CC UA G ACCCA...UGU-3'@LB@ UAGCCUG GAU UC GAAGA CCGAC GC@LB@ ||||||| ||| || ||||| ||||| ||@LB@ AUCGGAC CUA AG CUUCU GGCUG CG@LB@3'-UUU...CACUA UACUCCU UU A CA A CACCC...GUU-5'@LB@ | |@LB@ 112 74@LB@@LB@@LB@Energy -12.48 kcal/mol@LB@Hybridization Energy -29.9732 kcal/mol@LB@Unfolding Energy - mRNA 5.9478 kcal/mol@LB@Unfolding Energy - sRNA 11.5432 kcal/mol@LB@@LB@Position - mRNA 209 -- 242@LB@Position - sRNA 75 -- 111@LB@Position Seed - mRNA 209 -- 215@LB@Position Seed - sRNA 105 -- 111@LB@ |
179 |
0.004617 |
0.1185 |
pa4812 |
fdnG |
-14.50 |
0.014314 |
180 -- 196 |
94 -- 109 |
formate dehydrogenase-O major subunit |
|
_____________179_______________197\n_____________|_________________|\n5'-CCC...CCUUU________C________CACGA...CCG-3'\n______________GCCUGAUG_AGGAGAUG\n______________||||||||_|||||||:\n______________CGGACUAC_UCCUCUAU\n3'-UUU...CUAAU_________________UAGAC...GUU-5'\n_____________|_________________|\n_____________110_______________93\n |
190 -- 196 |
94 -- 100 |
-26.4921 kcal/mol |
6.69504 kcal/mol |
5.30224 kcal/mol |
179 197@LB@ | |@LB@5'-CCC...CCUUU C CACGA...CCG-3'@LB@ GCCUGAUG AGGAGAUG@LB@ |||||||| |||||||:@LB@ CGGACUAC UCCUCUAU@LB@3'-UUU...CUAAU UAGAC...GUU-5'@LB@ | |@LB@ 110 93@LB@@LB@@LB@Energy -14.50 kcal/mol@LB@Hybridization Energy -26.4921 kcal/mol@LB@Unfolding Energy - mRNA 6.69504 kcal/mol@LB@Unfolding Energy - sRNA 5.30224 kcal/mol@LB@@LB@Position - mRNA 180 -- 196@LB@Position - sRNA 94 -- 109@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 94 -- 100@LB@ |
180 |
0.004705 |
0.1199 |
pa3616 |
N/A |
-16.34 |
0.003989 |
120 -- 132 |
35 -- 47 |
recombination regulator RecX |
|
_____________119___________133\n_____________|_____________|\n5'-GUC...ACCAU_____________CUGGC...UGC-3'\n______________UCGCGACCAGUUG\n______________|||||||||||||\n______________AGCGCUGGUCAAC\n3'-UUU...ACUAG_____________UCACU...GUU-5'\n_____________|_____________|\n_____________48____________34\n |
126 -- 132 |
35 -- 41 |
-23.7921 kcal/mol |
3.77419 kcal/mol |
3.68501 kcal/mol |
119 133@LB@ | |@LB@5'-GUC...ACCAU CUGGC...UGC-3'@LB@ UCGCGACCAGUUG@LB@ |||||||||||||@LB@ AGCGCUGGUCAAC@LB@3'-UUU...ACUAG UCACU...GUU-5'@LB@ | |@LB@ 48 34@LB@@LB@@LB@Energy -16.34 kcal/mol@LB@Hybridization Energy -23.7921 kcal/mol@LB@Unfolding Energy - mRNA 3.77419 kcal/mol@LB@Unfolding Energy - sRNA 3.68501 kcal/mol@LB@@LB@Position - mRNA 120 -- 132@LB@Position - sRNA 35 -- 47@LB@Position Seed - mRNA 126 -- 132@LB@Position Seed - sRNA 35 -- 41@LB@ |