| 91 |
0.001223 |
0.06177 |
pa3618 |
N/A |
-14.35 |
0.015718 |
191 -- 224 |
76 -- 123 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________190_______________________________________________225\n_____________|_________________________________________________|\n5'-GAG...CCCUG______A_____GAC_______________________________C__ACCGC...CCG-3'\n______________GAGAAC_GUGAU___CCUGAUG_______________GAGUCCGAC_UG\n______________:|:|||_|||||___|||||||_______________|||||||||_||\n______________UUUUUG_CACUA___GGACUAC_______________CUCAGGCUG_AC\n3'-UUU...CCCAG______G_____AUC_______UCCUCUAUUAGACUU____________GCACC...GUU-5'\n_____________|_________________________________________________|\n_____________124_______________________________________________75\n |
215 -- 221 |
78 -- 84 |
-35.9898 kcal/mol |
9.49172 kcal/mol |
12.1513 kcal/mol |
190 225@LB@ | |@LB@5'-GAG...CCCUG A GAC C ACCGC...CCG-3'@LB@ GAGAAC GUGAU CCUGAUG GAGUCCGAC UG@LB@ :|:||| ||||| ||||||| ||||||||| ||@LB@ UUUUUG CACUA GGACUAC CUCAGGCUG AC@LB@3'-UUU...CCCAG G AUC UCCUCUAUUAGACUU GCACC...GUU-5'@LB@ | |@LB@ 124 75@LB@@LB@@LB@Energy -14.35 kcal/mol@LB@Hybridization Energy -35.9898 kcal/mol@LB@Unfolding Energy - mRNA 9.49172 kcal/mol@LB@Unfolding Energy - sRNA 12.1513 kcal/mol@LB@@LB@Position - mRNA 191 -- 224@LB@Position - sRNA 76 -- 123@LB@Position Seed - mRNA 215 -- 221@LB@Position Seed - sRNA 78 -- 84@LB@ |
| 92 |
0.001266 |
0.06327 |
pa1307 |
N/A |
-13.15 |
0.033214 |
250 -- 278 |
41 -- 65 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________249___________________________279\n_____________|_____________________________|\n5'-UGC...CGUCU_______C_____A_____GCAG______GGCGG...GCG-3'\n______________UCAGCUU_ACCGG_CUGAU____CGCGGC\n______________|||||||_|||||_|||||____||||:|\n______________AGUCGAA_UGGCC_GACUA____GCGCUG\n3'-UUU...CAGAG___________________GA________GUCAA...GUU-5'\n_____________|_____________________________|\n_____________66____________________________40\n |
250 -- 256 |
59 -- 65 |
-34.6223 kcal/mol |
8.37343 kcal/mol |
13.1048 kcal/mol |
249 279@LB@ | |@LB@5'-UGC...CGUCU C A GCAG GGCGG...GCG-3'@LB@ UCAGCUU ACCGG CUGAU CGCGGC@LB@ ||||||| ||||| ||||| ||||:|@LB@ AGUCGAA UGGCC GACUA GCGCUG@LB@3'-UUU...CAGAG GA GUCAA...GUU-5'@LB@ | |@LB@ 66 40@LB@@LB@@LB@Energy -13.15 kcal/mol@LB@Hybridization Energy -34.6223 kcal/mol@LB@Unfolding Energy - mRNA 8.37343 kcal/mol@LB@Unfolding Energy - sRNA 13.1048 kcal/mol@LB@@LB@Position - mRNA 250 -- 278@LB@Position - sRNA 41 -- 65@LB@Position Seed - mRNA 250 -- 256@LB@Position Seed - sRNA 59 -- 65@LB@ |
| 93 |
0.001289 |
0.06355 |
pa4454 |
N/A |
-9.11 |
0.266760 |
170 -- 178 |
75 -- 83 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________169_______179\n_____________|_________|\n5'-CCG...UUCAU_________UUUGA...UGG-3'\n______________UCUGACUGC\n______________||:||||||\n______________AGGCUGACG\n3'-UUU...UUCUC_________CACCC...GUU-5'\n_____________|_________|\n_____________84________74\n |
172 -- 178 |
75 -- 81 |
-14.8179 kcal/mol |
1.6159 kcal/mol |
4.09544 kcal/mol |
169 179@LB@ | |@LB@5'-CCG...UUCAU UUUGA...UGG-3'@LB@ UCUGACUGC@LB@ ||:||||||@LB@ AGGCUGACG@LB@3'-UUU...UUCUC CACCC...GUU-5'@LB@ | |@LB@ 84 74@LB@@LB@@LB@Energy -9.11 kcal/mol@LB@Hybridization Energy -14.8179 kcal/mol@LB@Unfolding Energy - mRNA 1.6159 kcal/mol@LB@Unfolding Energy - sRNA 4.09544 kcal/mol@LB@@LB@Position - mRNA 170 -- 178@LB@Position - sRNA 75 -- 83@LB@Position Seed - mRNA 172 -- 178@LB@Position Seed - sRNA 75 -- 81@LB@ |
| 94 |
0.001308 |
0.06355 |
pa1587 |
lpdG |
-9.92 |
0.185926 |
282 -- 296 |
75 -- 91 |
2-oxoglutarate dehydrogenase complex dihydrolipoyl dehydrogenase |
|
_____________281_______________297\n_____________|_________________|\n5'-GUG...UGGGC____________C____AUCG-3'\n______________CUGAAGA__CCG_CUGC\n______________|||||||__|||_||||\n______________GACUUCU__GGC_GACG\n3'-UUU...UAUUA_______CA___U____CACCC...GUU-5'\n_____________|_________________|\n_____________92________________74\n |
282 -- 288 |
85 -- 91 |
-18.2743 kcal/mol |
2.47066 kcal/mol |
5.88668 kcal/mol |
281 297@LB@ | |@LB@5'-GUG...UGGGC C AUCG-3'@LB@ CUGAAGA CCG CUGC@LB@ ||||||| ||| ||||@LB@ GACUUCU GGC GACG@LB@3'-UUU...UAUUA CA U CACCC...GUU-5'@LB@ | |@LB@ 92 74@LB@@LB@@LB@Energy -9.92 kcal/mol@LB@Hybridization Energy -18.2743 kcal/mol@LB@Unfolding Energy - mRNA 2.47066 kcal/mol@LB@Unfolding Energy - sRNA 5.88668 kcal/mol@LB@@LB@Position - mRNA 282 -- 296@LB@Position - sRNA 75 -- 91@LB@Position Seed - mRNA 282 -- 288@LB@Position Seed - sRNA 85 -- 91@LB@ |
| 95 |
0.001333 |
0.06355 |
pa5380 |
gbdR |
-10.99 |
0.110367 |
154 -- 228 |
78 -- 123 |
protein GbdR |
|
_____________153_________________________________________________________________________229\n_____________|___________________________________________________________________________|\n5'-UGC...AUAAA_______UC____GA______CUUGCUCAGC___________CACCCA___CCACGUACGCGCCC_______C__CACAG...CGG-3'\n______________AAAAGCC__GUGA__GGCCUG__________GUGAGGAGAUA______UGA______________GGAGUCC_AC\n______________||||:||__||||__:|||||__________:||||||||||______|||______________:||||||_||\n______________UUUUUGG__CACU__UCGGAC__________UACUCCUCUAU______ACU______________UCUCAGG_UG\n3'-UUU...CCCAG_____________AA___________________________UAG___________________________C__ACGCA...GUU-5'\n_____________|___________________________________________________________________________|\n_____________124_________________________________________________________________________77\n |
219 -- 225 |
81 -- 87 |
-45.4439 kcal/mol |
22.3385 kcal/mol |
12.1238 kcal/mol |
153 229@LB@ | |@LB@5'-UGC...AUAAA UC GA CUUGCUCAGC CACCCA CCACGUACGCGCCC C CACAG...CGG-3'@LB@ AAAAGCC GUGA GGCCUG GUGAGGAGAUA UGA GGAGUCC AC@LB@ ||||:|| |||| :||||| :|||||||||| ||| :|||||| ||@LB@ UUUUUGG CACU UCGGAC UACUCCUCUAU ACU UCUCAGG UG@LB@3'-UUU...CCCAG AA UAG C ACGCA...GUU-5'@LB@ | |@LB@ 124 77@LB@@LB@@LB@Energy -10.99 kcal/mol@LB@Hybridization Energy -45.4439 kcal/mol@LB@Unfolding Energy - mRNA 22.3385 kcal/mol@LB@Unfolding Energy - sRNA 12.1238 kcal/mol@LB@@LB@Position - mRNA 154 -- 228@LB@Position - sRNA 78 -- 123@LB@Position Seed - mRNA 219 -- 225@LB@Position Seed - sRNA 81 -- 87@LB@ |
| 96 |
0.00134 |
0.06355 |
pa1641 |
N/A |
-15.72 |
0.006244 |
223 -- 294 |
34 -- 118 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________222______________________________________________________________________________________295\n_____________|________________________________________________________________________________________|\n5'-CGU...UCUGC____CC___C_____CCCU___________________________CC__CAAGACC__C______GA__A__G__C___________ACGCGG-3'\n______________CCGU__UUG_CCUGA____GG________________CCGGCUGCG__GG_______GC_UACCGG__GA_CU_CG_CGACCAGUUGG\n______________||||__||:_|||||____||________________|||:|||||__||_______||_||||||__||_||_||_||||||||||:\n______________GGCA__AAU_GGACU____CC________________GGCUGACGC__CC_______CG_AUGGCC__CU_GA_GC_GCUGGUCAACU\n3'-UUU...UUUUU____CU___C_____ACU___UCUAUUAGACUUCUCA_________AC__AGAGAGU__A______GA__A_________________CACUG...GUU-5'\n_____________|________________________________________________________________________________________|\n_____________119______________________________________________________________________________________33\n |
288 -- 294 |
34 -- 40 |
-66.8102 kcal/mol |
27.6932 kcal/mol |
23.4074 kcal/mol |
222 295@LB@ | |@LB@5'-CGU...UCUGC CC C CCCU CC CAAGACC C GA A G C ACGCGG-3'@LB@ CCGU UUG CCUGA GG CCGGCUGCG GG GC UACCGG GA CU CG CGACCAGUUGG@LB@ |||| ||: ||||| || |||:||||| || || |||||| || || || ||||||||||:@LB@ GGCA AAU GGACU CC GGCUGACGC CC CG AUGGCC CU GA GC GCUGGUCAACU@LB@3'-UUU...UUUUU CU C ACU UCUAUUAGACUUCUCA AC AGAGAGU A GA A CACUG...GUU-5'@LB@ | |@LB@ 119 33@LB@@LB@@LB@Energy -15.72 kcal/mol@LB@Hybridization Energy -66.8102 kcal/mol@LB@Unfolding Energy - mRNA 27.6932 kcal/mol@LB@Unfolding Energy - sRNA 23.4074 kcal/mol@LB@@LB@Position - mRNA 223 -- 294@LB@Position - sRNA 34 -- 118@LB@Position Seed - mRNA 288 -- 294@LB@Position Seed - sRNA 34 -- 40@LB@ |
| 97 |
0.001341 |
0.06355 |
pa3929 |
cioB |
-12.35 |
0.052798 |
141 -- 190 |
33 -- 89 |
cyanide insensitive terminal oxidase |
|
_____________140____________________________________________________________191\n_____________|______________________________________________________________|\n5'-UCG...UCGAC______CA____G______________C__GCA_G____C______________GACAA___GAACU...UCU-3'\n______________GAAGAG__CGAC_GC__________CA_GC___A_CGGC_GA_C_CGCGACCAG_____GAG\n______________||||||__||||_||__________||_||___|_||||_||_|_|||||||||_____|||\n______________CUUCUC__GCUG_CG__________GU_CG___U_GCCG_CU_G_GCGCUGGUC_____CUC\n3'-UUU...UUAGA______AG____A__CACCCAGAGA_____AA__G____A__A_A_________AA______ACUGU...GUU-5'\n_____________|______________________________________________________________|\n_____________90_____________________________________________________________32\n |
176 -- 182 |
38 -- 44 |
-47.0211 kcal/mol |
15.6367 kcal/mol |
19.0341 kcal/mol |
140 191@LB@ | |@LB@5'-UCG...UCGAC CA G C GCA G C GACAA GAACU...UCU-3'@LB@ GAAGAG CGAC GC CA GC A CGGC GA C CGCGACCAG GAG@LB@ |||||| |||| || || || | |||| || | ||||||||| |||@LB@ CUUCUC GCUG CG GU CG U GCCG CU G GCGCUGGUC CUC@LB@3'-UUU...UUAGA AG A CACCCAGAGA AA G A A A AA ACUGU...GUU-5'@LB@ | |@LB@ 90 32@LB@@LB@@LB@Energy -12.35 kcal/mol@LB@Hybridization Energy -47.0211 kcal/mol@LB@Unfolding Energy - mRNA 15.6367 kcal/mol@LB@Unfolding Energy - sRNA 19.0341 kcal/mol@LB@@LB@Position - mRNA 141 -- 190@LB@Position - sRNA 33 -- 89@LB@Position Seed - mRNA 176 -- 182@LB@Position Seed - sRNA 38 -- 44@LB@ |
| 98 |
0.001381 |
0.06477 |
pa5040 |
pilQ |
-10.76 |
0.123916 |
69 -- 120 |
75 -- 117 |
type 4 fimbrial biogenesis outer membrane protein PilQ |
|
_____________68_____________________________________________________121\n_____________|______________________________________________________|\n5'-GUG...AUAGA______CGAAAUCGUU_____CGGA_______ACUGG______C__________AGCCU...CAC-3'\n______________CGUGAU__________CCUGA____GAGGGGA_____CUGGAG_GUCCG_C_GC\n______________||||||__________|||||____||||:||_____|||:||_|||||_|_||\n______________GCACUA__________GGACU____CUCCUCU_____GACUUC_CAGGC_G_CG\n3'-UUU...UUUUG______AUC____________A__________AUUA_______U_____U_A__CACCC...GUU-5'\n_____________|______________________________________________________|\n_____________118____________________________________________________74\n |
94 -- 100 |
96 -- 102 |
-39.923 kcal/mol |
16.9987 kcal/mol |
12.1721 kcal/mol |
68 121@LB@ | |@LB@5'-GUG...AUAGA CGAAAUCGUU CGGA ACUGG C AGCCU...CAC-3'@LB@ CGUGAU CCUGA GAGGGGA CUGGAG GUCCG C GC@LB@ |||||| ||||| ||||:|| |||:|| ||||| | ||@LB@ GCACUA GGACU CUCCUCU GACUUC CAGGC G CG@LB@3'-UUU...UUUUG AUC A AUUA U U A CACCC...GUU-5'@LB@ | |@LB@ 118 74@LB@@LB@@LB@Energy -10.76 kcal/mol@LB@Hybridization Energy -39.923 kcal/mol@LB@Unfolding Energy - mRNA 16.9987 kcal/mol@LB@Unfolding Energy - sRNA 12.1721 kcal/mol@LB@@LB@Position - mRNA 69 -- 120@LB@Position - sRNA 75 -- 117@LB@Position Seed - mRNA 94 -- 100@LB@Position Seed - sRNA 96 -- 102@LB@ |
| 99 |
0.001467 |
0.06809 |
pa5206 |
argE |
-18.10 |
0.000993 |
157 -- 251 |
40 -- 119 |
acetylornithine deacetylase |
|
_____________156______________________________________________________________________________________________252\n_____________|________________________________________________________________________________________________|\n5'-UGA...CCACU____C___A____A________CUC___CC__G__________CA___C___UGCC______GAAAGAC_____C_G__C_______GC____U__UCCGU...UGG-3'\n______________GCCG_GAU_GGCC_UGAUGGGG___GAU__GU_UGGAGAGUCC___UG_CGU____GUCUCU_______CAGUU_G_CG_GCUGAUC__CGCG_CU\n______________:|||_|||_:|||_|||||:||___|||__:|_||:|||||||___||_|||____||||||_______|||:|_:_||_|||||||__||||_|:\n______________UGGC_CUA_UCGG_ACUACUCC___CUA__UA_ACUUCUCAGG___AC_GCA____CAGAGA_______GUCGA_U_GC_CGACUAG__GCGC_GG\n3'-UUU...GUUUU____A___A_____________U_____U___G__________CUG______CC____________________A_G__________A_____U__UCAAC...GUU-5'\n_____________|________________________________________________________________________________________________|\n_____________120______________________________________________________________________________________________39\n |
193 -- 199 |
81 -- 87 |
-84.9505 kcal/mol |
43.4484 kcal/mol |
23.4062 kcal/mol |
156 252@LB@ | |@LB@5'-UGA...CCACU C A A CUC CC G CA C UGCC GAAAGAC C G C GC U UCCGU...UGG-3'@LB@ GCCG GAU GGCC UGAUGGGG GAU GU UGGAGAGUCC UG CGU GUCUCU CAGUU G CG GCUGAUC CGCG CU@LB@ :||| ||| :||| |||||:|| ||| :| ||:||||||| || ||| |||||| |||:| : || ||||||| |||| |:@LB@ UGGC CUA UCGG ACUACUCC CUA UA ACUUCUCAGG AC GCA CAGAGA GUCGA U GC CGACUAG GCGC GG@LB@3'-UUU...GUUUU A A U U G CUG CC A G A U UCAAC...GUU-5'@LB@ | |@LB@ 120 39@LB@@LB@@LB@Energy -18.10 kcal/mol@LB@Hybridization Energy -84.9505 kcal/mol@LB@Unfolding Energy - mRNA 43.4484 kcal/mol@LB@Unfolding Energy - sRNA 23.4062 kcal/mol@LB@@LB@Position - mRNA 157 -- 251@LB@Position - sRNA 40 -- 119@LB@Position Seed - mRNA 193 -- 199@LB@Position Seed - sRNA 81 -- 87@LB@ |
| 100 |
0.001607 |
0.07384 |
pa0607 |
rpe |
-12.76 |
0.041806 |
177 -- 194 |
99 -- 118 |
ribulose-phosphate 3-epimerase |
|
_____________176__________________195\n_____________|____________________|\n5'-CCG...GCCUU_______CC____U______UGCGC...UUC-3'\n______________CCGUGAU___CCU__UGAGG\n______________|||||||___|||__|||||\n______________GGCACUA___GGA__ACUCC\n3'-UUU...UUUUU_______AUC___CU_____UCUAU...GUU-5'\n_____________|____________________|\n_____________119__________________98\n |
177 -- 183 |
112 -- 118 |
-19.2108 kcal/mol |
4.20353 kcal/mol |
2.24947 kcal/mol |
176 195@LB@ | |@LB@5'-CCG...GCCUU CC U UGCGC...UUC-3'@LB@ CCGUGAU CCU UGAGG@LB@ ||||||| ||| |||||@LB@ GGCACUA GGA ACUCC@LB@3'-UUU...UUUUU AUC CU UCUAU...GUU-5'@LB@ | |@LB@ 119 98@LB@@LB@@LB@Energy -12.76 kcal/mol@LB@Hybridization Energy -19.2108 kcal/mol@LB@Unfolding Energy - mRNA 4.20353 kcal/mol@LB@Unfolding Energy - sRNA 2.24947 kcal/mol@LB@@LB@Position - mRNA 177 -- 194@LB@Position - sRNA 99 -- 118@LB@Position Seed - mRNA 177 -- 183@LB@Position Seed - sRNA 112 -- 118@LB@ |
