| 141 |
0.002959 |
0.09644 |
pa5519 |
N/A |
-12.18 |
0.058415 |
260 -- 272 |
100 -- 118 |
acyl-CoA thioesterase |
pa2693 |
_____________259_________________273\n_____________|___________________|\n5'-GGG...CCCGC___________________AGAAA...ACA-3'\n______________CCGU______CCUGAUGAG\n______________||||______|||||||||\n______________GGCA______GGACUACUC\n3'-UUU...UUUUU____CUAAUC_________CUCUA...GUU-5'\n_____________|___________________|\n_____________119_________________99\n |
266 -- 272 |
100 -- 106 |
-18.4857 kcal/mol |
4.06476 kcal/mol |
2.24889 kcal/mol |
259 273@LB@ | |@LB@5'-GGG...CCCGC AGAAA...ACA-3'@LB@ CCGU CCUGAUGAG@LB@ |||| |||||||||@LB@ GGCA GGACUACUC@LB@3'-UUU...UUUUU CUAAUC CUCUA...GUU-5'@LB@ | |@LB@ 119 99@LB@@LB@@LB@Energy -12.18 kcal/mol@LB@Hybridization Energy -18.4857 kcal/mol@LB@Unfolding Energy - mRNA 4.06476 kcal/mol@LB@Unfolding Energy - sRNA 2.24889 kcal/mol@LB@@LB@Position - mRNA 260 -- 272@LB@Position - sRNA 100 -- 118@LB@Position Seed - mRNA 266 -- 272@LB@Position Seed - sRNA 100 -- 106@LB@ |
| 142 |
0.003054 |
0.09883 |
pa4939 |
N/A |
-10.79 |
0.122172 |
84 -- 99 |
39 -- 58 |
ATP phosphoribosyltransferase |
|
_____________83___________________100\n_____________|____________________|\n5'-CGC...CAUCG____________________UCACC...AUC-3'\n______________GCCGGCUGA____GCGACCG\n______________:||||||||____||||||:\n______________UGGCCGACU____CGCUGGU\n3'-UUU...UCGAA_________AGAG_______CAACU...GUU-5'\n_____________|____________________|\n_____________59___________________38\n |
93 -- 99 |
39 -- 45 |
-28.5021 kcal/mol |
6.65531 kcal/mol |
11.0618 kcal/mol |
83 100@LB@ | |@LB@5'-CGC...CAUCG UCACC...AUC-3'@LB@ GCCGGCUGA GCGACCG@LB@ :|||||||| ||||||:@LB@ UGGCCGACU CGCUGGU@LB@3'-UUU...UCGAA AGAG CAACU...GUU-5'@LB@ | |@LB@ 59 38@LB@@LB@@LB@Energy -10.79 kcal/mol@LB@Hybridization Energy -28.5021 kcal/mol@LB@Unfolding Energy - mRNA 6.65531 kcal/mol@LB@Unfolding Energy - sRNA 11.0618 kcal/mol@LB@@LB@Position - mRNA 84 -- 99@LB@Position - sRNA 39 -- 58@LB@Position Seed - mRNA 93 -- 99@LB@Position Seed - sRNA 39 -- 45@LB@ |
| 143 |
0.003113 |
0.1001 |
pa1811 |
N/A |
-11.02 |
0.108661 |
233 -- 245 |
105 -- 120 |
solute-binding protein |
|
_____________232______________246\n_____________|________________|\n5'-GAG...GGCCU________________CCCAG...UCA-3'\n______________GGCCGUGA___GCCUG\n______________::||||||___|||||\n______________UUGGCACU___CGGAC\n3'-UUU...AGUUU________AAU_____UACUC...GUU-5'\n_____________|________________|\n_____________121______________104\n |
234 -- 240 |
113 -- 119 |
-18.7383 kcal/mol |
5.48096 kcal/mol |
2.24173 kcal/mol |
232 246@LB@ | |@LB@5'-GAG...GGCCU CCCAG...UCA-3'@LB@ GGCCGUGA GCCUG@LB@ ::|||||| |||||@LB@ UUGGCACU CGGAC@LB@3'-UUU...AGUUU AAU UACUC...GUU-5'@LB@ | |@LB@ 121 104@LB@@LB@@LB@Energy -11.02 kcal/mol@LB@Hybridization Energy -18.7383 kcal/mol@LB@Unfolding Energy - mRNA 5.48096 kcal/mol@LB@Unfolding Energy - sRNA 2.24173 kcal/mol@LB@@LB@Position - mRNA 233 -- 245@LB@Position - sRNA 105 -- 120@LB@Position Seed - mRNA 234 -- 240@LB@Position Seed - sRNA 113 -- 119@LB@ |
| 144 |
0.003137 |
0.1001 |
pa1516 |
N/A |
-10.35 |
0.151671 |
51 -- 72 |
44 -- 62 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________50_____________________73\n_____________|______________________|\n5'-GUG...GGCCU__A_____________GG____CCGGC...AGA-3'\n______________GC_UUGCCGGUUGAUC__UCGC\n______________||_||:||||:|||||__||||\n______________CG_AAUGGCCGACUAG__AGCG\n3'-UUU...AGAGU______________________CUGGU...GUU-5'\n_____________|______________________|\n_____________63_____________________43\n |
57 -- 63 |
51 -- 57 |
-28.648 kcal/mol |
8.16614 kcal/mol |
10.1396 kcal/mol |
50 73@LB@ | |@LB@5'-GUG...GGCCU A GG CCGGC...AGA-3'@LB@ GC UUGCCGGUUGAUC UCGC@LB@ || ||:||||:||||| ||||@LB@ CG AAUGGCCGACUAG AGCG@LB@3'-UUU...AGAGU CUGGU...GUU-5'@LB@ | |@LB@ 63 43@LB@@LB@@LB@Energy -10.35 kcal/mol@LB@Hybridization Energy -28.648 kcal/mol@LB@Unfolding Energy - mRNA 8.16614 kcal/mol@LB@Unfolding Energy - sRNA 10.1396 kcal/mol@LB@@LB@Position - mRNA 51 -- 72@LB@Position - sRNA 44 -- 62@LB@Position Seed - mRNA 57 -- 63@LB@Position Seed - sRNA 51 -- 57@LB@ |
| 145 |
0.003161 |
0.1002 |
pa4147 |
acoR |
-9.16 |
0.260996 |
230 -- 255 |
98 -- 121 |
transcriptional regulator AcoR |
pa4021 |
_____________229_________________________256\n_____________|___________________________|\n5'-UAG...CAUGU________UC_____G__UCC______ACGCC...UCG-3'\n______________GGACUGUG___AGCC_UG___UGAGGA\n______________::||:|||___||||_||___||||||\n______________UUUGGCAC___UCGG_AC___ACUCCU\n3'-UUU...CAGUU________UAA_______U________CUAUU...GUU-5'\n_____________|___________________________|\n_____________122_________________________97\n |
231 -- 237 |
114 -- 120 |
-22.6885 kcal/mol |
11.2814 kcal/mol |
2.25186 kcal/mol |
229 256@LB@ | |@LB@5'-UAG...CAUGU UC G UCC ACGCC...UCG-3'@LB@ GGACUGUG AGCC UG UGAGGA@LB@ ::||:||| |||| || ||||||@LB@ UUUGGCAC UCGG AC ACUCCU@LB@3'-UUU...CAGUU UAA U CUAUU...GUU-5'@LB@ | |@LB@ 122 97@LB@@LB@@LB@Energy -9.16 kcal/mol@LB@Hybridization Energy -22.6885 kcal/mol@LB@Unfolding Energy - mRNA 11.2814 kcal/mol@LB@Unfolding Energy - sRNA 2.25186 kcal/mol@LB@@LB@Position - mRNA 230 -- 255@LB@Position - sRNA 98 -- 121@LB@Position Seed - mRNA 231 -- 237@LB@Position Seed - sRNA 114 -- 120@LB@ |
| 146 |
0.003267 |
0.1028 |
pa0918 |
N/A |
-13.83 |
0.021920 |
192 -- 207 |
107 -- 122 |
cytochrome b561 |
|
_____________191______________208\n_____________|________________|\n5'-CCA...GAGAA___________G____GGAAA...AAC-3'\n______________GGAACCGUGAU_AGCU\n______________::|||||||||_|||:\n______________UUUUGGCACUA_UCGG\n3'-UUU...CCAGU___________A____ACUAC...GUU-5'\n_____________|________________|\n_____________123______________106\n |
196 -- 202 |
112 -- 118 |
-20.0543 kcal/mol |
3.98833 kcal/mol |
2.23582 kcal/mol |
191 208@LB@ | |@LB@5'-CCA...GAGAA G GGAAA...AAC-3'@LB@ GGAACCGUGAU AGCU@LB@ ::||||||||| |||:@LB@ UUUUGGCACUA UCGG@LB@3'-UUU...CCAGU A ACUAC...GUU-5'@LB@ | |@LB@ 123 106@LB@@LB@@LB@Energy -13.83 kcal/mol@LB@Hybridization Energy -20.0543 kcal/mol@LB@Unfolding Energy - mRNA 3.98833 kcal/mol@LB@Unfolding Energy - sRNA 2.23582 kcal/mol@LB@@LB@Position - mRNA 192 -- 207@LB@Position - sRNA 107 -- 122@LB@Position Seed - mRNA 196 -- 202@LB@Position Seed - sRNA 112 -- 118@LB@ |
| 147 |
0.003398 |
0.1053 |
pa4657 |
N/A |
-14.94 |
0.010704 |
152 -- 169 |
105 -- 123 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________151_________________170\n_____________|___________________|\n5'-UCU...GUACA_____________C_____UCCAG...AGG-3'\n______________AGAAACC_UGAUU_GCCUG\n______________|:|||||_|||||_|||||\n______________UUUUUGG_ACUAA_CGGAC\n3'-UUU...CCCAG_______C_____U_____UACUC...GUU-5'\n_____________|___________________|\n_____________124_________________104\n |
152 -- 158 |
117 -- 123 |
-19.6832 kcal/mol |
2.50735 kcal/mol |
2.24275 kcal/mol |
151 170@LB@ | |@LB@5'-UCU...GUACA C UCCAG...AGG-3'@LB@ AGAAACC UGAUU GCCUG@LB@ |:||||| ||||| |||||@LB@ UUUUUGG ACUAA CGGAC@LB@3'-UUU...CCCAG C U UACUC...GUU-5'@LB@ | |@LB@ 124 104@LB@@LB@@LB@Energy -14.94 kcal/mol@LB@Hybridization Energy -19.6832 kcal/mol@LB@Unfolding Energy - mRNA 2.50735 kcal/mol@LB@Unfolding Energy - sRNA 2.24275 kcal/mol@LB@@LB@Position - mRNA 152 -- 169@LB@Position - sRNA 105 -- 123@LB@Position Seed - mRNA 152 -- 158@LB@Position Seed - sRNA 117 -- 123@LB@ |
| 148 |
0.003408 |
0.1053 |
pa1533 |
N/A |
-10.12 |
0.169364 |
218 -- 231 |
101 -- 120 |
nucleoid-associated protein |
|
_____________217__________________232\n_____________|____________________|\n5'-AGA...GGCAU____________________AGCAG...CCG-3'\n______________GGCCG______GCCUGAUGA\n______________::|||______|||||||||\n______________UUGGC______CGGACUACU\n3'-UUU...AGUUU_____ACUAAU_________CCUCU...GUU-5'\n_____________|____________________|\n_____________121__________________100\n |
225 -- 231 |
101 -- 107 |
-19.3791 kcal/mol |
7.01958 kcal/mol |
2.2437 kcal/mol |
217 232@LB@ | |@LB@5'-AGA...GGCAU AGCAG...CCG-3'@LB@ GGCCG GCCUGAUGA@LB@ ::||| |||||||||@LB@ UUGGC CGGACUACU@LB@3'-UUU...AGUUU ACUAAU CCUCU...GUU-5'@LB@ | |@LB@ 121 100@LB@@LB@@LB@Energy -10.12 kcal/mol@LB@Hybridization Energy -19.3791 kcal/mol@LB@Unfolding Energy - mRNA 7.01958 kcal/mol@LB@Unfolding Energy - sRNA 2.2437 kcal/mol@LB@@LB@Position - mRNA 218 -- 231@LB@Position - sRNA 101 -- 120@LB@Position Seed - mRNA 225 -- 231@LB@Position Seed - sRNA 101 -- 107@LB@ |
| 149 |
0.003414 |
0.1053 |
pa3109 |
N/A |
-16.06 |
0.004890 |
59 -- 72 |
33 -- 46 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________58_____________73\n_____________|______________|\n5'-CGG...GCCUG______________CAAGC...UGC-3'\n______________CGCGACCAGUUGAG\n______________||||||||||||||\n______________GCGCUGGUCAACUC\n3'-UUU...CUAGA______________ACUGU...GUU-5'\n_____________|______________|\n_____________47_____________32\n |
66 -- 72 |
33 -- 39 |
-27.0742 kcal/mol |
7.33982 kcal/mol |
3.68029 kcal/mol |
58 73@LB@ | |@LB@5'-CGG...GCCUG CAAGC...UGC-3'@LB@ CGCGACCAGUUGAG@LB@ ||||||||||||||@LB@ GCGCUGGUCAACUC@LB@3'-UUU...CUAGA ACUGU...GUU-5'@LB@ | |@LB@ 47 32@LB@@LB@@LB@Energy -16.06 kcal/mol@LB@Hybridization Energy -27.0742 kcal/mol@LB@Unfolding Energy - mRNA 7.33982 kcal/mol@LB@Unfolding Energy - sRNA 3.68029 kcal/mol@LB@@LB@Position - mRNA 59 -- 72@LB@Position - sRNA 33 -- 46@LB@Position Seed - mRNA 66 -- 72@LB@Position Seed - sRNA 33 -- 39@LB@ |
| 150 |
0.003458 |
0.106 |
pa5558 |
atpF |
-11.25 |
0.096505 |
215 -- 228 |
107 -- 120 |
ATP synthase subunit B |
|
_____________214____________229\n_____________|______________|\n5'-CUC...AAUGC____C_________AGUCC...UGC-3'\n______________AACC_UGAUUGGCC\n______________||||_|||||:|||\n______________UUGG_ACUAAUCGG\n3'-UUU...AGUUU____C_________ACUAC...GUU-5'\n_____________|______________|\n_____________121____________106\n |
222 -- 228 |
107 -- 113 |
-18.4292 kcal/mol |
4.95427 kcal/mol |
2.2351 kcal/mol |
214 229@LB@ | |@LB@5'-CUC...AAUGC C AGUCC...UGC-3'@LB@ AACC UGAUUGGCC@LB@ |||| |||||:|||@LB@ UUGG ACUAAUCGG@LB@3'-UUU...AGUUU C ACUAC...GUU-5'@LB@ | |@LB@ 121 106@LB@@LB@@LB@Energy -11.25 kcal/mol@LB@Hybridization Energy -18.4292 kcal/mol@LB@Unfolding Energy - mRNA 4.95427 kcal/mol@LB@Unfolding Energy - sRNA 2.2351 kcal/mol@LB@@LB@Position - mRNA 215 -- 228@LB@Position - sRNA 107 -- 120@LB@Position Seed - mRNA 222 -- 228@LB@Position Seed - sRNA 107 -- 113@LB@ |
