| 21 |
5.061e-05 |
0.01105 |
pa1778 |
cobA |
-17.87 |
0.001208 |
184 -- 227 |
69 -- 109 |
uroporphyrin-III C-methyltransferase |
|
_____________183____________________________________________228\n_____________|______________________________________________|\n5'-GGU...CGAAU______G___AAC__C_____GCG_U____________________GCGGG...UGG-3'\n______________GCCUGA_GAG___GA_GAUGA___G_AAG_GUCUGGCUG_GUGGGU\n______________||||||_|||___||_|||:|___|_|||_|||:|:|||_||||||\n______________CGGACU_CUC___CU_CUAUU___C_UUC_CAGGCUGAC_CACCCA\n3'-UUU...CUAAU______A______________AGA_____U_________G______GAGAG...GUU-5'\n_____________|______________________________________________|\n_____________110____________________________________________68\n |
215 -- 221 |
76 -- 82 |
-46.3721 kcal/mol |
15.5624 kcal/mol |
12.9463 kcal/mol |
183 228@LB@ | |@LB@5'-GGU...CGAAU G AAC C GCG U GCGGG...UGG-3'@LB@ GCCUGA GAG GA GAUGA G AAG GUCUGGCUG GUGGGU@LB@ |||||| ||| || |||:| | ||| |||:|:||| ||||||@LB@ CGGACU CUC CU CUAUU C UUC CAGGCUGAC CACCCA@LB@3'-UUU...CUAAU A AGA U G GAGAG...GUU-5'@LB@ | |@LB@ 110 68@LB@@LB@@LB@Energy -17.87 kcal/mol@LB@Hybridization Energy -46.3721 kcal/mol@LB@Unfolding Energy - mRNA 15.5624 kcal/mol@LB@Unfolding Energy - sRNA 12.9463 kcal/mol@LB@@LB@Position - mRNA 184 -- 227@LB@Position - sRNA 69 -- 109@LB@Position Seed - mRNA 215 -- 221@LB@Position Seed - sRNA 76 -- 82@LB@ |
| 22 |
5.562e-05 |
0.01105 |
pa2264 |
N/A |
-16.58 |
0.003334 |
170 -- 193 |
98 -- 122 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________169_______________________194\n_____________|_________________________|\n5'-CCU...AAGAC___________GAU__A________CCCCA...AUG-3'\n______________GAAACCGUGAU___CC_GA_GAGGA\n______________:||||||||||___||_||_|||||\n______________UUUUGGCACUA___GG_CU_CUCCU\n3'-UUU...CCAGU___________AUC__A__A_____CUAUU...GUU-5'\n_____________|_________________________|\n_____________123_______________________97\n |
174 -- 180 |
112 -- 118 |
-25.8581 kcal/mol |
7.03089 kcal/mol |
2.25226 kcal/mol |
169 194@LB@ | |@LB@5'-CCU...AAGAC GAU A CCCCA...AUG-3'@LB@ GAAACCGUGAU CC GA GAGGA@LB@ :|||||||||| || || |||||@LB@ UUUUGGCACUA GG CU CUCCU@LB@3'-UUU...CCAGU AUC A A CUAUU...GUU-5'@LB@ | |@LB@ 123 97@LB@@LB@@LB@Energy -16.58 kcal/mol@LB@Hybridization Energy -25.8581 kcal/mol@LB@Unfolding Energy - mRNA 7.03089 kcal/mol@LB@Unfolding Energy - sRNA 2.25226 kcal/mol@LB@@LB@Position - mRNA 170 -- 193@LB@Position - sRNA 98 -- 122@LB@Position Seed - mRNA 174 -- 180@LB@Position Seed - sRNA 112 -- 118@LB@ |
| 23 |
5.711e-05 |
0.01105 |
pa2967 |
fabG |
-15.49 |
0.007349 |
171 -- 236 |
53 -- 111 |
3-oxoacyl-[acyl-carrier-protein] reductase FabG |
|
_____________170__________________________________________________________________237\n_____________|____________________________________________________________________|\n5'-CCC...CGCCC________GAGAGAGAA______G____CCAU_________AAG__AA____GCA_____A_______GCCAG...UCG-3'\n______________UGGCCUGA_________AGGAGA_AAUC____GAGUCUG_C___GU__GGUC___UUGGU__ACCGGC\n______________|:||||||_________||||||_||||____|||||:|_|___||__||||___|::|:__||||||\n______________AUCGGACU_________UCCUCU_UUAG____CUCAGGC_G___CA__CCAG___AGUCG__UGGCCG\n3'-UUU...CACUA________AC_____________A____ACUU_______U_ACG__C_____AG______AA______ACUAG...GUU-5'\n_____________|____________________________________________________________________|\n_____________112__________________________________________________________________52\n |
203 -- 209 |
80 -- 86 |
-53.5207 kcal/mol |
19.3634 kcal/mol |
18.6748 kcal/mol |
170 237@LB@ | |@LB@5'-CCC...CGCCC GAGAGAGAA G CCAU AAG AA GCA A GCCAG...UCG-3'@LB@ UGGCCUGA AGGAGA AAUC GAGUCUG C GU GGUC UUGGU ACCGGC@LB@ |:|||||| |||||| |||| |||||:| | || |||| |::|: ||||||@LB@ AUCGGACU UCCUCU UUAG CUCAGGC G CA CCAG AGUCG UGGCCG@LB@3'-UUU...CACUA AC A ACUU U ACG C AG AA ACUAG...GUU-5'@LB@ | |@LB@ 112 52@LB@@LB@@LB@Energy -15.49 kcal/mol@LB@Hybridization Energy -53.5207 kcal/mol@LB@Unfolding Energy - mRNA 19.3634 kcal/mol@LB@Unfolding Energy - sRNA 18.6748 kcal/mol@LB@@LB@Position - mRNA 171 -- 236@LB@Position - sRNA 53 -- 111@LB@Position Seed - mRNA 203 -- 209@LB@Position Seed - sRNA 80 -- 86@LB@ |
| 24 |
5.771e-05 |
0.01105 |
pa5035 |
gltD |
-10.90 |
0.115442 |
181 -- 216 |
79 -- 110 |
glutamate synthase subunit beta |
|
_____________180___________________________________217\n_____________|_____________________________________|\n5'-UCG...CCCGA___UG________UUUC____U_______C_______AUUCC...AGC-3'\n______________AGU__UGAUGAGG____GAUA_GUCUGAA__GUCUGA\n______________||:__||||||||____||||_:||||||__|||:||\n______________UCG__ACUACUCC____CUAU_UAGACUU__CAGGCU\n3'-UUU...ACUAA___G_________U_______________CU______GACGC...GUU-5'\n_____________|_____________________________________|\n_____________111___________________________________78\n |
203 -- 209 |
87 -- 93 |
-30.6009 kcal/mol |
8.30781 kcal/mol |
11.3934 kcal/mol |
180 217@LB@ | |@LB@5'-UCG...CCCGA UG UUUC U C AUUCC...AGC-3'@LB@ AGU UGAUGAGG GAUA GUCUGAA GUCUGA@LB@ ||: |||||||| |||| :|||||| |||:||@LB@ UCG ACUACUCC CUAU UAGACUU CAGGCU@LB@3'-UUU...ACUAA G U CU GACGC...GUU-5'@LB@ | |@LB@ 111 78@LB@@LB@@LB@Energy -10.90 kcal/mol@LB@Hybridization Energy -30.6009 kcal/mol@LB@Unfolding Energy - mRNA 8.30781 kcal/mol@LB@Unfolding Energy - sRNA 11.3934 kcal/mol@LB@@LB@Position - mRNA 181 -- 216@LB@Position - sRNA 79 -- 110@LB@Position Seed - mRNA 203 -- 209@LB@Position Seed - sRNA 87 -- 93@LB@ |
| 25 |
6.377e-05 |
0.01172 |
pa4235 |
bfrA |
-17.70 |
0.001383 |
58 -- 83 |
99 -- 122 |
bacterioferritin |
|
_____________57__________________________84\n_____________|___________________________|\n5'-CCU...GGCCU_______GAC_________________CCCCC...AGG-3'\n______________GAAGCUG___UGA_UGGCCUGAUGAGG\n______________:||:|:|___|||_|:|||||||||||\n______________UUUUGGC___ACU_AUCGGACUACUCC\n3'-UUU...CCAGU_____________A_____________UCUAU...GUU-5'\n_____________|___________________________|\n_____________123_________________________98\n |
77 -- 83 |
99 -- 105 |
-30.6433 kcal/mol |
10.6928 kcal/mol |
2.25034 kcal/mol |
57 84@LB@ | |@LB@5'-CCU...GGCCU GAC CCCCC...AGG-3'@LB@ GAAGCUG UGA UGGCCUGAUGAGG@LB@ :||:|:| ||| |:|||||||||||@LB@ UUUUGGC ACU AUCGGACUACUCC@LB@3'-UUU...CCAGU A UCUAU...GUU-5'@LB@ | |@LB@ 123 98@LB@@LB@@LB@Energy -17.70 kcal/mol@LB@Hybridization Energy -30.6433 kcal/mol@LB@Unfolding Energy - mRNA 10.6928 kcal/mol@LB@Unfolding Energy - sRNA 2.25034 kcal/mol@LB@@LB@Position - mRNA 58 -- 83@LB@Position - sRNA 99 -- 122@LB@Position Seed - mRNA 77 -- 83@LB@Position Seed - sRNA 99 -- 105@LB@ |
| 26 |
6.892e-05 |
0.01177 |
pa0375 |
ftsX |
-18.23 |
0.000891 |
153 -- 205 |
100 -- 144 |
cell division protein FtsX |
|
_____________152___________________________________________________206\n_____________|_____________________________________________________|\n5'-CUG...AUGCU_____U____C__G_____A___UCGCU________GGAUGA___________CGCCA...CGU-3'\n______________GACCC_GCAG_GU_GCCGG_UCA_____GACCGUGA______GGCCUGAUGAG\n______________|||||_|||:_||_|||||_|||_____:|||||||______:||||||||||\n______________CUGGG_CGUU_CA_CGGCC_AGU_____UUGGCACU______UCGGACUACUC\n____3'-UUUUUUU_____C____U________C___UU___________AA_______________CUCUA...GUU-5'\n_____________|_____________________________________________________|\n_____________145___________________________________________________99\n |
199 -- 205 |
100 -- 106 |
-59.0387 kcal/mol |
20.5976 kcal/mol |
20.2157 kcal/mol |
152 206@LB@ | |@LB@5'-CUG...AUGCU U C G A UCGCU GGAUGA CGCCA...CGU-3'@LB@ GACCC GCAG GU GCCGG UCA GACCGUGA GGCCUGAUGAG@LB@ ||||| |||: || ||||| ||| :||||||| :||||||||||@LB@ CUGGG CGUU CA CGGCC AGU UUGGCACU UCGGACUACUC@LB@ 3'-UUUUUUU C U C UU AA CUCUA...GUU-5'@LB@ | |@LB@ 145 99@LB@@LB@@LB@Energy -18.23 kcal/mol@LB@Hybridization Energy -59.0387 kcal/mol@LB@Unfolding Energy - mRNA 20.5976 kcal/mol@LB@Unfolding Energy - sRNA 20.2157 kcal/mol@LB@@LB@Position - mRNA 153 -- 205@LB@Position - sRNA 100 -- 144@LB@Position Seed - mRNA 199 -- 205@LB@Position Seed - sRNA 100 -- 106@LB@ |
| 27 |
6.94e-05 |
0.01177 |
pa5535 |
N/A |
-11.95 |
0.066023 |
197 -- 251 |
53 -- 120 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________196______________________________________________________________________252\n_____________|________________________________________________________________________|\n5'-GAG...UUACC________ACCAAC____AC_______________UCA______U_____CC__C_________________AAGAG...GGG-3'\n______________AACCGUGA______GCCU______________CUG______CCG_GCUGU__GG_UUUCUCGGC__GCCGGC\n______________||||||||______||||______________|||______|||_:|||:__||_|:||||:||__:|||||\n______________UUGGCACU______CGGA______________GAC______GGC_UGACG__CC_AGAGAGUCG__UGGCCG\n3'-UUU...AGUUU________AAU_______CUACUCCUCUAUUA___UUCUCA_________CA__C_________AA______ACUAG...GUU-5'\n_____________|________________________________________________________________________|\n_____________121______________________________________________________________________52\n |
239 -- 245 |
61 -- 67 |
-49.0988 kcal/mol |
18.4451 kcal/mol |
18.7053 kcal/mol |
196 252@LB@ | |@LB@5'-GAG...UUACC ACCAAC AC UCA U CC C AAGAG...GGG-3'@LB@ AACCGUGA GCCU CUG CCG GCUGU GG UUUCUCGGC GCCGGC@LB@ |||||||| |||| ||| ||| :|||: || |:||||:|| :|||||@LB@ UUGGCACU CGGA GAC GGC UGACG CC AGAGAGUCG UGGCCG@LB@3'-UUU...AGUUU AAU CUACUCCUCUAUUA UUCUCA CA C AA ACUAG...GUU-5'@LB@ | |@LB@ 121 52@LB@@LB@@LB@Energy -11.95 kcal/mol@LB@Hybridization Energy -49.0988 kcal/mol@LB@Unfolding Energy - mRNA 18.4451 kcal/mol@LB@Unfolding Energy - sRNA 18.7053 kcal/mol@LB@@LB@Position - mRNA 197 -- 251@LB@Position - sRNA 53 -- 120@LB@Position Seed - mRNA 239 -- 245@LB@Position Seed - sRNA 61 -- 67@LB@ |
| 28 |
7.532e-05 |
0.01177 |
pa2865 |
N/A |
-15.38 |
0.007930 |
179 -- 247 |
40 -- 110 |
glycosylase |
|
_____________178__________________________________________________________________________248\n_____________|____________________________________________________________________________|\n5'-CCG...CAUCG_______CCUCU_____CCUGGA___C_C________________________U_____U______G_________CUUGC...AAC-3'\n______________AGCCUGG_____GGAGA______UGA_G_GUCUG_UUGC_UG___CUUUC_GC_UUGCC_GCUGGU_CUCGC_ACC\n______________||||||:_____|||||______|||_|_|||:|_:|||_||___||:||_||_||:||_||||:|_|||||_|||\n______________UCGGACU_____CCUCU______ACU_C_CAGGC_GACG_AC___GAGAG_CG_AAUGG_CGACUA_GAGCG_UGG\n3'-UUU...ACUAA_______ACU_______AUUAG____U_U_____U____C__CCA_____U________C____________C___UCAAC...GUU-5'\n_____________|____________________________________________________________________________|\n_____________111__________________________________________________________________________39\n |
179 -- 185 |
104 -- 110 |
-64.7758 kcal/mol |
26.0418 kcal/mol |
23.3621 kcal/mol |
178 248@LB@ | |@LB@5'-CCG...CAUCG CCUCU CCUGGA C C U U G CUUGC...AAC-3'@LB@ AGCCUGG GGAGA UGA G GUCUG UUGC UG CUUUC GC UUGCC GCUGGU CUCGC ACC@LB@ ||||||: ||||| ||| | |||:| :||| || ||:|| || ||:|| ||||:| ||||| |||@LB@ UCGGACU CCUCU ACU C CAGGC GACG AC GAGAG CG AAUGG CGACUA GAGCG UGG@LB@3'-UUU...ACUAA ACU AUUAG U U U C CCA U C C UCAAC...GUU-5'@LB@ | |@LB@ 111 39@LB@@LB@@LB@Energy -15.38 kcal/mol@LB@Hybridization Energy -64.7758 kcal/mol@LB@Unfolding Energy - mRNA 26.0418 kcal/mol@LB@Unfolding Energy - sRNA 23.3621 kcal/mol@LB@@LB@Position - mRNA 179 -- 247@LB@Position - sRNA 40 -- 110@LB@Position Seed - mRNA 179 -- 185@LB@Position Seed - sRNA 104 -- 110@LB@ |
| 29 |
7.803e-05 |
0.01177 |
pa5491 |
N/A |
-19.34 |
0.000334 |
185 -- 216 |
75 -- 108 |
cytochrome |
|
_____________184_________________________________217\n_____________|___________________________________|\n5'-GGG...UUCCC___________C______A______AA________UCGCA...CGU-3'\n______________CCUGAUGAGGA___GAUC_UGAAGA__CUG_CUGC\n______________|||||||||||___:|||_||||||__|:|_||||\n______________GGACUACUCCU___UUAG_ACUUCU__GGC_GACG\n3'-UUU...UAAUC___________CUA___________CA___U____CACCC...GUU-5'\n_____________|___________________________________|\n_____________109_________________________________74\n |
189 -- 195 |
98 -- 104 |
-37.6738 kcal/mol |
6.8106 kcal/mol |
11.5256 kcal/mol |
184 217@LB@ | |@LB@5'-GGG...UUCCC C A AA UCGCA...CGU-3'@LB@ CCUGAUGAGGA GAUC UGAAGA CUG CUGC@LB@ ||||||||||| :||| |||||| |:| ||||@LB@ GGACUACUCCU UUAG ACUUCU GGC GACG@LB@3'-UUU...UAAUC CUA CA U CACCC...GUU-5'@LB@ | |@LB@ 109 74@LB@@LB@@LB@Energy -19.34 kcal/mol@LB@Hybridization Energy -37.6738 kcal/mol@LB@Unfolding Energy - mRNA 6.8106 kcal/mol@LB@Unfolding Energy - sRNA 11.5256 kcal/mol@LB@@LB@Position - mRNA 185 -- 216@LB@Position - sRNA 75 -- 108@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 98 -- 104@LB@ |
| 30 |
8.033e-05 |
0.01177 |
pa3717 |
N/A |
-10.05 |
0.175331 |
209 -- 216 |
75 -- 82 |
FkbP-type peptidyl-prolyl cis-trans isomerase |
|
_____________208______217\n_____________|________|\n5'-UCU...AACGA________AGAUC...AAG-3'\n______________CCGACUGC\n______________||||||||\n______________GGCUGACG\n3'-UUU...UCUCA________CACCC...GUU-5'\n_____________|________|\n_____________83_______74\n |
210 -- 216 |
75 -- 81 |
-16.1929 kcal/mol |
2.05248 kcal/mol |
4.09516 kcal/mol |
208 217@LB@ | |@LB@5'-UCU...AACGA AGAUC...AAG-3'@LB@ CCGACUGC@LB@ ||||||||@LB@ GGCUGACG@LB@3'-UUU...UCUCA CACCC...GUU-5'@LB@ | |@LB@ 83 74@LB@@LB@@LB@Energy -10.05 kcal/mol@LB@Hybridization Energy -16.1929 kcal/mol@LB@Unfolding Energy - mRNA 2.05248 kcal/mol@LB@Unfolding Energy - sRNA 4.09516 kcal/mol@LB@@LB@Position - mRNA 209 -- 216@LB@Position - sRNA 75 -- 82@LB@Position Seed - mRNA 210 -- 216@LB@Position Seed - sRNA 75 -- 81@LB@ |
