| 123 |
0.0134 |
0.3627 |
b3774 |
ilvC |
-11.90 |
0.092739 |
9 -- 41 |
1 -- 25 |
ketol-acid reductoisomerase NAD(P)-binding |
|
_____________8__________________________________42\n_____________|__________________________________|\n___5'-AUGGCGGC_______CAGAUGCAG__A_______A_______GUAAA...GCU-3'\n______________UUUCCGC_________GA_GGUUUUC__GAUCGC\n______________|:|||||_________||_|||:|||__||||||\n______________AGAGGCG_________CU_CCAGAAG__CUAGCG\n3'-UUU...GUCCA__________________C_______GA______-5'\n_____________|_________________________________|\n_____________26________________________________1\n |
28 -- 34 |
9 -- 15 |
-28.1375 kcal/mol |
8.51703 kcal/mol |
7.71912 kcal/mol |
8 42@LB@ | |@LB@ 5'-AUGGCGGC CAGAUGCAG A A GUAAA...GCU-3'@LB@ UUUCCGC GA GGUUUUC GAUCGC@LB@ |:||||| || |||:||| ||||||@LB@ AGAGGCG CU CCAGAAG CUAGCG@LB@3'-UUU...GUCCA C GA -5'@LB@ | |@LB@ 26 1@LB@@LB@@LB@Energy -11.90 kcal/mol@LB@Hybridization Energy -28.1375 kcal/mol@LB@Unfolding Energy - mRNA 8.51703 kcal/mol@LB@Unfolding Energy - sRNA 7.71912 kcal/mol@LB@@LB@Position - mRNA 9 -- 41@LB@Position - sRNA 1 -- 25@LB@Position Seed - mRNA 28 -- 34@LB@Position Seed - sRNA 9 -- 15@LB@ |
| 21 |
0.001761 |
0.2682 |
b2988 |
gss |
-16.20 |
0.017239 |
12 -- 42 |
38 -- 68 |
glutathionylspermidine amidase and glutathionylspermidine synthetase |
|
_____________11________________________________43\n_____________|_________________________________|\n5'-AGU...CUUCU________G__UU____________________ACUUG...UCG-3'\n______________GAGUGGUA_UG__GAAGCAGUGU_AGCAG_GUC\n______________:|||::||_||__||||||:|||_||||:_|||\n______________UUCAUUAU_AC__CUUCGUUACA_UCGUU_CAG\n3'-UUU...ACCGA________G______________C_____A___CACGA...GCG-5'\n_____________|_________________________________|\n_____________69________________________________37\n |
28 -- 34 |
48 -- 54 |
-32.4779 kcal/mol |
12.9749 kcal/mol |
3.30528 kcal/mol |
11 43@LB@ | |@LB@5'-AGU...CUUCU G UU ACUUG...UCG-3'@LB@ GAGUGGUA UG GAAGCAGUGU AGCAG GUC@LB@ :|||::|| || ||||||:||| ||||: |||@LB@ UUCAUUAU AC CUUCGUUACA UCGUU CAG@LB@3'-UUU...ACCGA G C A CACGA...GCG-5'@LB@ | |@LB@ 69 37@LB@@LB@@LB@Energy -16.20 kcal/mol@LB@Hybridization Energy -32.4779 kcal/mol@LB@Unfolding Energy - mRNA 12.9749 kcal/mol@LB@Unfolding Energy - sRNA 3.30528 kcal/mol@LB@@LB@Position - mRNA 12 -- 42@LB@Position - sRNA 38 -- 68@LB@Position Seed - mRNA 28 -- 34@LB@Position Seed - sRNA 48 -- 54@LB@ |
| 93 |
0.009691 |
0.3393 |
b2959 |
yggL |
-10.23 |
0.172987 |
12 -- 59 |
38 -- 83 |
DUF469 family protein |
|
_____________11_________________________________________________60\n_____________|__________________________________________________|\n5'-GUA...CAUAU___GA___A____GAACCUU____________U___CU__A_________UUCUA...CAU-3'\n______________GGC__CCG_CUGG_______AUGC_GGAA_CA_AUG__UG_AGUGAUGUC\n______________:||__|||_||||_______||:|_||||_||_|||__||_||::|||||\n______________UCG__GGC_GACC_______UAUG_CCUU_GU_UAC__AC_UCGUUACAG\n____3'-UUUUCGG___UG___C____GAUUCAU____A____C____________________CACGA...GCG-5'\n_____________|__________________________________________________|\n_____________84_________________________________________________37\n |
53 -- 59 |
38 -- 44 |
-35.0381 kcal/mol |
9.91615 kcal/mol |
14.8888 kcal/mol |
11 60@LB@ | |@LB@5'-GUA...CAUAU GA A GAACCUU U CU A UUCUA...CAU-3'@LB@ GGC CCG CUGG AUGC GGAA CA AUG UG AGUGAUGUC@LB@ :|| ||| |||| ||:| |||| || ||| || ||::|||||@LB@ UCG GGC GACC UAUG CCUU GU UAC AC UCGUUACAG@LB@ 3'-UUUUCGG UG C GAUUCAU A C CACGA...GCG-5'@LB@ | |@LB@ 84 37@LB@@LB@@LB@Energy -10.23 kcal/mol@LB@Hybridization Energy -35.0381 kcal/mol@LB@Unfolding Energy - mRNA 9.91615 kcal/mol@LB@Unfolding Energy - sRNA 14.8888 kcal/mol@LB@@LB@Position - mRNA 12 -- 59@LB@Position - sRNA 38 -- 83@LB@Position Seed - mRNA 53 -- 59@LB@Position Seed - sRNA 38 -- 44@LB@ |
| 134 |
0.01479 |
0.3709 |
b1930 |
yedF |
-8.51 |
0.315187 |
12 -- 23 |
55 -- 66 |
putative TusA family sulfurtransferase |
|
_____________11___________24\n_____________|____________|\n5'-ACG...CUGGC___U________UGAUU...AAG-3'\n______________GUA_UACUGGGA\n______________|||_||||||:|\n______________CAU_AUGACCUU\n3'-UUU...CGAUU___U________CGUUA...GCG-5'\n_____________|____________|\n_____________67___________54\n |
17 -- 23 |
55 -- 61 |
-12.6769 kcal/mol |
2.14533 kcal/mol |
2.01956 kcal/mol |
11 24@LB@ | |@LB@5'-ACG...CUGGC U UGAUU...AAG-3'@LB@ GUA UACUGGGA@LB@ ||| ||||||:|@LB@ CAU AUGACCUU@LB@3'-UUU...CGAUU U CGUUA...GCG-5'@LB@ | |@LB@ 67 54@LB@@LB@@LB@Energy -8.51 kcal/mol@LB@Hybridization Energy -12.6769 kcal/mol@LB@Unfolding Energy - mRNA 2.14533 kcal/mol@LB@Unfolding Energy - sRNA 2.01956 kcal/mol@LB@@LB@Position - mRNA 12 -- 23@LB@Position - sRNA 55 -- 66@LB@Position Seed - mRNA 17 -- 23@LB@Position Seed - sRNA 55 -- 61@LB@ |
| 99 |
0.01025 |
0.3393 |
b1887 |
cheW |
-9.13 |
0.255901 |
16 -- 66 |
38 -- 87 |
purine-binding chemotaxis protein |
|
_____________15___________________________________________________67\n_____________|____________________________________________________|\n5'-GUG...UAAUU_____A____A___UG_______AAACC____A______CUAUC____A___CCCGG...UCC-3'\n______________GGUCA_CACC_GGU__UGGUUAA______UUG_AAGUAA_____GCAA_GUC\n______________:|:||_||||_||:__|||:|||______:||_|||:||_____||||_|||\n______________UCGGU_GUGG_CCG__ACCGAUU______GAC_UUCGUU_____CGUU_CAG\n________3'-UUU_____C____G____________CAUUAU___C______ACACU____A___CACGA...GCG-5'\n_____________|____________________________________________________|\n_____________88___________________________________________________37\n |
32 -- 38 |
67 -- 73 |
-34.6295 kcal/mol |
10.5892 kcal/mol |
14.9106 kcal/mol |
15 67@LB@ | |@LB@5'-GUG...UAAUU A A UG AAACC A CUAUC A CCCGG...UCC-3'@LB@ GGUCA CACC GGU UGGUUAA UUG AAGUAA GCAA GUC@LB@ :|:|| |||| ||: |||:||| :|| |||:|| |||| |||@LB@ UCGGU GUGG CCG ACCGAUU GAC UUCGUU CGUU CAG@LB@ 3'-UUU C G CAUUAU C ACACU A CACGA...GCG-5'@LB@ | |@LB@ 88 37@LB@@LB@@LB@Energy -9.13 kcal/mol@LB@Hybridization Energy -34.6295 kcal/mol@LB@Unfolding Energy - mRNA 10.5892 kcal/mol@LB@Unfolding Energy - sRNA 14.9106 kcal/mol@LB@@LB@Position - mRNA 16 -- 66@LB@Position - sRNA 38 -- 87@LB@Position Seed - mRNA 32 -- 38@LB@Position Seed - sRNA 67 -- 73@LB@ |
| 65 |
0.005781 |
0.2905 |
b0934 |
ssuC |
-15.17 |
0.025944 |
17 -- 44 |
19 -- 47 |
aliphatic sulfonate ABC transporter permease |
|
_____________16____________________________45\n_____________|_____________________________|\n5'-UGC...GCAUC_______U_____________CUA_____AUCUG...GGC-3'\n______________GA_CAGU_UUGUGCUUUCGGG___UCCGC\n______________||_||:|_|:||||||||:||___|||||\n______________CU_GUUA_AGCACGAAAGUCC___AGGCG\n3'-UUU...UUACA__C____C_____________AAG_____CUCCC...GCG-5'\n_____________|_____________________________|\n_____________48____________________________18\n |
26 -- 32 |
31 -- 37 |
-34.9159 kcal/mol |
9.62465 kcal/mol |
10.1243 kcal/mol |
16 45@LB@ | |@LB@5'-UGC...GCAUC U CUA AUCUG...GGC-3'@LB@ GA CAGU UUGUGCUUUCGGG UCCGC@LB@ || ||:| |:||||||||:|| |||||@LB@ CU GUUA AGCACGAAAGUCC AGGCG@LB@3'-UUU...UUACA C C AAG CUCCC...GCG-5'@LB@ | |@LB@ 48 18@LB@@LB@@LB@Energy -15.17 kcal/mol@LB@Hybridization Energy -34.9159 kcal/mol@LB@Unfolding Energy - mRNA 9.62465 kcal/mol@LB@Unfolding Energy - sRNA 10.1243 kcal/mol@LB@@LB@Position - mRNA 17 -- 44@LB@Position - sRNA 19 -- 47@LB@Position Seed - mRNA 26 -- 32@LB@Position Seed - sRNA 31 -- 37@LB@ |
| 141 |
0.01639 |
0.3906 |
b1585 |
ynfC |
-13.03 |
0.059974 |
17 -- 62 |
43 -- 84 |
UPF0257 family lipoprotein |
|
_____________16______________________________________________63\n_____________|_______________________________________________|\n5'-GCU...GCUCA___G_U______GC_________CC__GG_U_______GG_C_____GAAGC...UCU-3'\n______________CAG_A_CCCGGC__GGC_GAGUA__GC__G_GAGGCGA__G_GAGCA\n______________|||_|_||||||__|||_:||||__:|__|_||:||:|__|_|||||\n______________GUC_U_GGGCCG__CCG_UUCAU__UG__C_CUUCGUU__C_CUCGU\n_____3'-UUUUCG___G________A____A_____UA__A__________A__A_____UACAG...GCG-5'\n_____________|_______________________________________________|\n_____________85______________________________________________42\n |
47 -- 53 |
51 -- 57 |
-45.3683 kcal/mol |
17.4395 kcal/mol |
14.8963 kcal/mol |
16 63@LB@ | |@LB@5'-GCU...GCUCA G U GC CC GG U GG C GAAGC...UCU-3'@LB@ CAG A CCCGGC GGC GAGUA GC G GAGGCGA G GAGCA@LB@ ||| | |||||| ||| :|||| :| | ||:||:| | |||||@LB@ GUC U GGGCCG CCG UUCAU UG C CUUCGUU C CUCGU@LB@ 3'-UUUUCG G A A UA A A A UACAG...GCG-5'@LB@ | |@LB@ 85 42@LB@@LB@@LB@Energy -13.03 kcal/mol@LB@Hybridization Energy -45.3683 kcal/mol@LB@Unfolding Energy - mRNA 17.4395 kcal/mol@LB@Unfolding Energy - sRNA 14.8963 kcal/mol@LB@@LB@Position - mRNA 17 -- 62@LB@Position - sRNA 43 -- 84@LB@Position Seed - mRNA 47 -- 53@LB@Position Seed - sRNA 51 -- 57@LB@ |
| 164 |
0.02028 |
0.4072 |
b3295 |
rpoA |
-11.98 |
0.089862 |
19 -- 43 |
66 -- 90 |
RNA polymerase alpha subunit |
|
_____________18_________________________44\n_____________|__________________________|\n5'-GAA...CGCGU__________U__G_A__________CAGCG...GUG-3'\n______________GAAAGCC_GC_CU_G_GCUGGCUGAG\n______________:||||||_||_|:_|_|||||||:||\n______________UUUUCGG_CG_GG_C_CGACCGAUUC\n___________3'-_______U__U__G____________AUUAU...GCG-5'\n______________|_________________________|\n______________90________________________65\n |
37 -- 43 |
66 -- 72 |
-33.5627 kcal/mol |
9.82436 kcal/mol |
11.7544 kcal/mol |
18 44@LB@ | |@LB@5'-GAA...CGCGU U G A CAGCG...GUG-3'@LB@ GAAAGCC GC CU G GCUGGCUGAG@LB@ :|||||| || |: | |||||||:||@LB@ UUUUCGG CG GG C CGACCGAUUC@LB@ 3'- U U G AUUAU...GCG-5'@LB@ | |@LB@ 90 65@LB@@LB@@LB@Energy -11.98 kcal/mol@LB@Hybridization Energy -33.5627 kcal/mol@LB@Unfolding Energy - mRNA 9.82436 kcal/mol@LB@Unfolding Energy - sRNA 11.7544 kcal/mol@LB@@LB@Position - mRNA 19 -- 43@LB@Position - sRNA 66 -- 90@LB@Position Seed - mRNA 37 -- 43@LB@Position Seed - sRNA 66 -- 72@LB@ |
| 118 |
0.01263 |
0.3585 |
b0890 |
ftsK |
-8.12 |
0.357469 |
20 -- 46 |
38 -- 59 |
DNA translocase at septal ring sorting daughter chromsomes |
|
_____________19__________________________47\n_____________|___________________________|\n5'-ACA...UGUUA______AAGU___GCA_______C___UGGUU...UUG-3'\n______________UGGAAG____CAA___GAGUAAU_GUC\n______________||||||____|||___|||:|||_|||\n______________ACCUUC____GUU___CUCGUUA_CAG\n3'-UUU...UUAUG_____________ACA___________CACGA...GCG-5'\n_____________|___________________________|\n_____________60__________________________37\n |
36 -- 42 |
41 -- 47 |
-18.6025 kcal/mol |
7.19996 kcal/mol |
3.27871 kcal/mol |
19 47@LB@ | |@LB@5'-ACA...UGUUA AAGU GCA C UGGUU...UUG-3'@LB@ UGGAAG CAA GAGUAAU GUC@LB@ |||||| ||| |||:||| |||@LB@ ACCUUC GUU CUCGUUA CAG@LB@3'-UUU...UUAUG ACA CACGA...GCG-5'@LB@ | |@LB@ 60 37@LB@@LB@@LB@Energy -8.12 kcal/mol@LB@Hybridization Energy -18.6025 kcal/mol@LB@Unfolding Energy - mRNA 7.19996 kcal/mol@LB@Unfolding Energy - sRNA 3.27871 kcal/mol@LB@@LB@Position - mRNA 20 -- 46@LB@Position - sRNA 38 -- 59@LB@Position Seed - mRNA 36 -- 42@LB@Position Seed - sRNA 41 -- 47@LB@ |
| 183 |
0.02251 |
0.4113 |
b4067 |
actP |
-16.98 |
0.012652 |
22 -- 44 |
66 -- 86 |
acetate transporter |
|
_____________21______________________45\n_____________|_______________________|\n5'-AUC...UGAUC___UUC_________________CACGC...GGC-3'\n______________GCC___GCGCCCGGCUGGCUGGG\n______________|||___||:|||||||||||::|\n______________CGG___CGUGGGCCGACCGAUUC\n_______3'-UUUU___U___________________AUUAU...GCG-5'\n_____________|_______________________|\n_____________87______________________65\n |
38 -- 44 |
66 -- 72 |
-41.8503 kcal/mol |
13.121 kcal/mol |
11.7541 kcal/mol |
21 45@LB@ | |@LB@5'-AUC...UGAUC UUC CACGC...GGC-3'@LB@ GCC GCGCCCGGCUGGCUGGG@LB@ ||| ||:|||||||||||::|@LB@ CGG CGUGGGCCGACCGAUUC@LB@ 3'-UUUU U AUUAU...GCG-5'@LB@ | |@LB@ 87 65@LB@@LB@@LB@Energy -16.98 kcal/mol@LB@Hybridization Energy -41.8503 kcal/mol@LB@Unfolding Energy - mRNA 13.121 kcal/mol@LB@Unfolding Energy - sRNA 11.7541 kcal/mol@LB@@LB@Position - mRNA 22 -- 44@LB@Position - sRNA 66 -- 86@LB@Position Seed - mRNA 38 -- 44@LB@Position Seed - sRNA 66 -- 72@LB@ |
