| 137 |
0.01545 |
0.379 |
b0881 |
clpS |
-11.92 |
0.091960 |
57 -- 82 |
37 -- 62 |
regulatory protein for ClpA substrate specificity |
|
_____________56_________________________83\n_____________|__________________________|\n5'-GCA...AACGC_____AC__G_______CA_______CUGAU...UCA-3'\n______________UAUUG__AG_AAUGUGA__GAUGUCG\n______________||:||__||_|||||||__:||||||\n______________AUGAC__UC_UUACACU__UUACAGC\n3'-UUU...UCAUU_____CU__G_______CG_______ACGAA...GCG-5'\n_____________|__________________________|\n_____________63_________________________36\n |
76 -- 82 |
37 -- 43 |
-23.3317 kcal/mol |
8.10565 kcal/mol |
3.3026 kcal/mol |
56 83@LB@ | |@LB@5'-GCA...AACGC AC G CA CUGAU...UCA-3'@LB@ UAUUG AG AAUGUGA GAUGUCG@LB@ ||:|| || ||||||| :||||||@LB@ AUGAC UC UUACACU UUACAGC@LB@3'-UUU...UCAUU CU G CG ACGAA...GCG-5'@LB@ | |@LB@ 63 36@LB@@LB@@LB@Energy -11.92 kcal/mol@LB@Hybridization Energy -23.3317 kcal/mol@LB@Unfolding Energy - mRNA 8.10565 kcal/mol@LB@Unfolding Energy - sRNA 3.3026 kcal/mol@LB@@LB@Position - mRNA 57 -- 82@LB@Position - sRNA 37 -- 62@LB@Position Seed - mRNA 76 -- 82@LB@Position Seed - sRNA 37 -- 43@LB@ |
| 70 |
0.006078 |
0.2917 |
b1612 |
fumA |
-11.08 |
0.126554 |
60 -- 88 |
36 -- 58 |
fumarate hydratase (fumarase A) aerobic Class I |
|
_____________59_____________________________89\n_____________|______________________________|\n5'-AUG...CUACG________CC_______CGCAA__A_____ACUAG...AAU-3'\n______________GGAAGUAA__UG_GAGC_____AA_GUCGU\n______________|||||:||__||_||||_____||_|||||\n______________CCUUCGUU__AC_CUCG_____UU_CAGCA\n3'-UUU...UAUGA____________A___________A_____CGAAA...GCG-5'\n_____________|______________________________|\n_____________59_____________________________35\n |
61 -- 67 |
51 -- 57 |
-19.4215 kcal/mol |
5.11518 kcal/mol |
3.22706 kcal/mol |
59 89@LB@ | |@LB@5'-AUG...CUACG CC CGCAA A ACUAG...AAU-3'@LB@ GGAAGUAA UG GAGC AA GUCGU@LB@ |||||:|| || |||| || |||||@LB@ CCUUCGUU AC CUCG UU CAGCA@LB@3'-UUU...UAUGA A A CGAAA...GCG-5'@LB@ | |@LB@ 59 35@LB@@LB@@LB@Energy -11.08 kcal/mol@LB@Hybridization Energy -19.4215 kcal/mol@LB@Unfolding Energy - mRNA 5.11518 kcal/mol@LB@Unfolding Energy - sRNA 3.22706 kcal/mol@LB@@LB@Position - mRNA 60 -- 88@LB@Position - sRNA 36 -- 58@LB@Position Seed - mRNA 61 -- 67@LB@Position Seed - sRNA 51 -- 57@LB@ |
| 199 |
0.02505 |
0.4226 |
b3794 |
wecG |
-14.56 |
0.032964 |
62 -- 86 |
1 -- 25 |
UDP-N-acetyl-D-mannosaminuronic acid transferase |
|
_____________61_________________________87\n_____________|__________________________|\n5'-UUC...GUUUG____A____U__________U_____GGUCU...ACG-3'\n______________UCUC_CGCG__GGUCUUUUU_AUCGU\n______________||||_||||__||||||::|_||||:\n______________AGAG_GCGC__CCAGAAGGA_UAGCG\n3'-UUU...GUCCA_________UC_________C_____-5'\n_____________|_________________________|\n_____________26________________________1\n |
74 -- 80 |
7 -- 13 |
-28.4933 kcal/mol |
6.21356 kcal/mol |
7.71912 kcal/mol |
61 87@LB@ | |@LB@5'-UUC...GUUUG A U U GGUCU...ACG-3'@LB@ UCUC CGCG GGUCUUUUU AUCGU@LB@ |||| |||| ||||||::| ||||:@LB@ AGAG GCGC CCAGAAGGA UAGCG@LB@3'-UUU...GUCCA UC C -5'@LB@ | |@LB@ 26 1@LB@@LB@@LB@Energy -14.56 kcal/mol@LB@Hybridization Energy -28.4933 kcal/mol@LB@Unfolding Energy - mRNA 6.21356 kcal/mol@LB@Unfolding Energy - sRNA 7.71912 kcal/mol@LB@@LB@Position - mRNA 62 -- 86@LB@Position - sRNA 1 -- 25@LB@Position Seed - mRNA 74 -- 80@LB@Position Seed - sRNA 7 -- 13@LB@ |
| 17 |
0.001256 |
0.2406 |
b2496 |
hda |
-13.91 |
0.042623 |
63 -- 79 |
52 -- 68 |
ATPase regulatory factor involved in DnaA inactivation |
|
_____________62________________80\n_____________|_________________|\n5'-GAC...UGAAG_____________C___GAAGA...CGC-3'\n______________AAGUGGUGCUGGA_GCA\n______________||||::|:|||||_|||\n______________UUCAUUAUGACCU_CGU\n3'-UUU...ACCGA_____________U___UACAC...GCG-5'\n_____________|_________________|\n_____________69________________51\n |
69 -- 75 |
56 -- 62 |
-21.6495 kcal/mol |
4.84804 kcal/mol |
2.8943 kcal/mol |
62 80@LB@ | |@LB@5'-GAC...UGAAG C GAAGA...CGC-3'@LB@ AAGUGGUGCUGGA GCA@LB@ ||||::|:||||| |||@LB@ UUCAUUAUGACCU CGU@LB@3'-UUU...ACCGA U UACAC...GCG-5'@LB@ | |@LB@ 69 51@LB@@LB@@LB@Energy -13.91 kcal/mol@LB@Hybridization Energy -21.6495 kcal/mol@LB@Unfolding Energy - mRNA 4.84804 kcal/mol@LB@Unfolding Energy - sRNA 2.8943 kcal/mol@LB@@LB@Position - mRNA 63 -- 79@LB@Position - sRNA 52 -- 68@LB@Position Seed - mRNA 69 -- 75@LB@Position Seed - sRNA 56 -- 62@LB@ |
| 104 |
0.01058 |
0.3418 |
b1475 |
fdnH |
-14.92 |
0.028592 |
64 -- 96 |
25 -- 61 |
formate dehydrogenase-N Fe-S (beta) subunit nitrate-inducible |
|
_____________63____________________________________97\n_____________|_____________________________________|\n5'-CGC...AAUCC_________UU______________C__GUAA_____AUAUC...UUA-3'\n______________ACUGG_GGC____UGAG_GGUGUCG_GC____AGGUU\n______________|||||_:||____||||_::|||||_||____|||||\n______________UGACC_UCG____ACUC_UUACAGC_CG____UCCAA\n3'-UUU...CAUUA_____U___UUAC____G_______A__AAAG_____GAGGC...GCG-5'\n_____________|_____________________________________|\n_____________62____________________________________24\n |
78 -- 84 |
37 -- 43 |
-32.5853 kcal/mol |
9.68233 kcal/mol |
7.98175 kcal/mol |
63 97@LB@ | |@LB@5'-CGC...AAUCC UU C GUAA AUAUC...UUA-3'@LB@ ACUGG GGC UGAG GGUGUCG GC AGGUU@LB@ ||||| :|| |||| ::||||| || |||||@LB@ UGACC UCG ACUC UUACAGC CG UCCAA@LB@3'-UUU...CAUUA U UUAC G A AAAG GAGGC...GCG-5'@LB@ | |@LB@ 62 24@LB@@LB@@LB@Energy -14.92 kcal/mol@LB@Hybridization Energy -32.5853 kcal/mol@LB@Unfolding Energy - mRNA 9.68233 kcal/mol@LB@Unfolding Energy - sRNA 7.98175 kcal/mol@LB@@LB@Position - mRNA 64 -- 96@LB@Position - sRNA 25 -- 61@LB@Position Seed - mRNA 78 -- 84@LB@Position Seed - sRNA 37 -- 43@LB@ |
| 159 |
0.02005 |
0.4072 |
b1725 |
yniA |
-13.71 |
0.046110 |
65 -- 84 |
43 -- 60 |
fructosamine kinase family protein |
|
_____________64___________________85\n_____________|____________________|\n5'-GAG...ACGAC_______G____GAAU____ACAGA...GGC-3'\n______________CUGGGAG_AAUG____AGCA\n______________||||:||_||||____||||\n______________GACCUUC_UUAC____UCGU\n3'-UUU...AUUAU_______G____AC______UACAG...GCG-5'\n_____________|____________________|\n_____________61___________________42\n |
65 -- 71 |
54 -- 60 |
-19.5513 kcal/mol |
2.54567 kcal/mol |
3.29917 kcal/mol |
64 85@LB@ | |@LB@5'-GAG...ACGAC G GAAU ACAGA...GGC-3'@LB@ CUGGGAG AAUG AGCA@LB@ ||||:|| |||| ||||@LB@ GACCUUC UUAC UCGU@LB@3'-UUU...AUUAU G AC UACAG...GCG-5'@LB@ | |@LB@ 61 42@LB@@LB@@LB@Energy -13.71 kcal/mol@LB@Hybridization Energy -19.5513 kcal/mol@LB@Unfolding Energy - mRNA 2.54567 kcal/mol@LB@Unfolding Energy - sRNA 3.29917 kcal/mol@LB@@LB@Position - mRNA 65 -- 84@LB@Position - sRNA 43 -- 60@LB@Position Seed - mRNA 65 -- 71@LB@Position Seed - sRNA 54 -- 60@LB@ |
| 122 |
0.01331 |
0.3627 |
b0078 |
ilvH |
-10.99 |
0.130728 |
66 -- 84 |
41 -- 61 |
acetolactate synthase 3 small subunit valine-sensitive |
|
_____________65____________________85\n_____________|_____________________|\n5'-GCC...GAGGC_______________C_____AAUCG...UGA-3'\n______________GCUGGAA_CAG_GUG_GCAAU\n______________:||||||_||:_|||_|||||\n______________UGACCUU_GUU_CAC_CGUUA\n3'-UUU...CAUUA_______C___A___U_____CAGCA...GCG-5'\n_____________|_____________________|\n_____________62____________________40\n |
66 -- 72 |
55 -- 61 |
-20.2432 kcal/mol |
5.95009 kcal/mol |
3.30062 kcal/mol |
65 85@LB@ | |@LB@5'-GCC...GAGGC C AAUCG...UGA-3'@LB@ GCUGGAA CAG GUG GCAAU@LB@ :|||||| ||: ||| |||||@LB@ UGACCUU GUU CAC CGUUA@LB@3'-UUU...CAUUA C A U CAGCA...GCG-5'@LB@ | |@LB@ 62 40@LB@@LB@@LB@Energy -10.99 kcal/mol@LB@Hybridization Energy -20.2432 kcal/mol@LB@Unfolding Energy - mRNA 5.95009 kcal/mol@LB@Unfolding Energy - sRNA 3.30062 kcal/mol@LB@@LB@Position - mRNA 66 -- 84@LB@Position - sRNA 41 -- 61@LB@Position Seed - mRNA 66 -- 72@LB@Position Seed - sRNA 55 -- 61@LB@ |
| 196 |
0.02499 |
0.4226 |
b3098 |
yqjD |
-9.33 |
0.238834 |
67 -- 86 |
37 -- 57 |
membrane-anchored ribosome-binding protein |
|
_____________66____________________87\n_____________|_____________________|\n5'-UCA...GAGGC_______AAA________C__AUAAG...AAG-3'\n______________GAAGCAA____GGCGAUG_CG\n______________|||||||____:||:|||_||\n______________CUUCGUU____UCGUUAC_GC\n3'-UUU...AUGAC_______ACAC_______A__ACGAA...GCG-5'\n_____________|_____________________|\n_____________58____________________36\n |
77 -- 83 |
40 -- 46 |
-18.4137 kcal/mol |
5.85817 kcal/mol |
3.2267 kcal/mol |
66 87@LB@ | |@LB@5'-UCA...GAGGC AAA C AUAAG...AAG-3'@LB@ GAAGCAA GGCGAUG CG@LB@ ||||||| :||:||| ||@LB@ CUUCGUU UCGUUAC GC@LB@3'-UUU...AUGAC ACAC A ACGAA...GCG-5'@LB@ | |@LB@ 58 36@LB@@LB@@LB@Energy -9.33 kcal/mol@LB@Hybridization Energy -18.4137 kcal/mol@LB@Unfolding Energy - mRNA 5.85817 kcal/mol@LB@Unfolding Energy - sRNA 3.2267 kcal/mol@LB@@LB@Position - mRNA 67 -- 86@LB@Position - sRNA 37 -- 57@LB@Position Seed - mRNA 77 -- 83@LB@Position Seed - sRNA 40 -- 46@LB@ |
| 156 |
0.0192 |
0.4072 |
b0472 |
recR |
-11.39 |
0.112512 |
68 -- 82 |
54 -- 68 |
gap repair protein |
|
_____________67______________83\n_____________|_______________|\n5'-GUG...CGACA___A___________ACCUG...UUC-3'\n______________AAG_GAUGCUGGAAG\n______________|||_:||:|||||||\n______________UUC_UUAUGACCUUC\n3'-UUU...ACCGA___A___________GUUAC...GCG-5'\n_____________|_______________|\n_____________69______________53\n |
76 -- 82 |
54 -- 60 |
-16.6291 kcal/mol |
2.52602 kcal/mol |
2.71091 kcal/mol |
67 83@LB@ | |@LB@5'-GUG...CGACA A ACCUG...UUC-3'@LB@ AAG GAUGCUGGAAG@LB@ ||| :||:|||||||@LB@ UUC UUAUGACCUUC@LB@3'-UUU...ACCGA A GUUAC...GCG-5'@LB@ | |@LB@ 69 53@LB@@LB@@LB@Energy -11.39 kcal/mol@LB@Hybridization Energy -16.6291 kcal/mol@LB@Unfolding Energy - mRNA 2.52602 kcal/mol@LB@Unfolding Energy - sRNA 2.71091 kcal/mol@LB@@LB@Position - mRNA 68 -- 82@LB@Position - sRNA 54 -- 68@LB@Position Seed - mRNA 76 -- 82@LB@Position Seed - sRNA 54 -- 60@LB@ |
| 198 |
0.02503 |
0.4226 |
b2544 |
yphB |
-11.73 |
0.099011 |
68 -- 80 |
47 -- 61 |
mutarotase superfamily protein YphB family |
|
_____________67______________81\n_____________|_______________|\n5'-CGG...GACGG_______________GCCGC...UAC-3'\n______________ACUGGAAGC__UGUG\n______________|||||||||__||||\n______________UGACCUUCG__ACAC\n3'-UUU...CAUUA_________UU____UCGUU...GCG-5'\n_____________|_______________|\n_____________62______________46\n |
70 -- 76 |
53 -- 59 |
-17.6322 kcal/mol |
2.81046 kcal/mol |
3.09217 kcal/mol |
67 81@LB@ | |@LB@5'-CGG...GACGG GCCGC...UAC-3'@LB@ ACUGGAAGC UGUG@LB@ ||||||||| ||||@LB@ UGACCUUCG ACAC@LB@3'-UUU...CAUUA UU UCGUU...GCG-5'@LB@ | |@LB@ 62 46@LB@@LB@@LB@Energy -11.73 kcal/mol@LB@Hybridization Energy -17.6322 kcal/mol@LB@Unfolding Energy - mRNA 2.81046 kcal/mol@LB@Unfolding Energy - sRNA 3.09217 kcal/mol@LB@@LB@Position - mRNA 68 -- 80@LB@Position - sRNA 47 -- 61@LB@Position Seed - mRNA 70 -- 76@LB@Position Seed - sRNA 53 -- 59@LB@ |
