27 |
0.002163 |
0.2692 |
b2563 |
acpS |
-16.12 |
0.017802 |
179 -- 203 |
40 -- 65 |
holo-[acyl-carrier-protein] synthase 1 |
|
_____________178_________________________204\n_____________|___________________________|\n5'-GCC...GCGUC______________C_______U____GCAAU...GCG-3'\n______________UGAUGCUGGAAGCG__GUG_GC_AAUG\n______________|:||:||||||||:__|||_||_||||\n______________AUUAUGACCUUCGU__CAC_CG_UUAC\n3'-UUU...GAUUC______________UA___U_______AGCAC...GCG-5'\n_____________|___________________________|\n_____________66__________________________39\n |
186 -- 192 |
52 -- 58 |
-28.0575 kcal/mol |
8.63593 kcal/mol |
3.30476 kcal/mol |
178 204@LB@ | |@LB@5'-GCC...GCGUC C U GCAAU...GCG-3'@LB@ UGAUGCUGGAAGCG GUG GC AAUG@LB@ |:||:||||||||: ||| || ||||@LB@ AUUAUGACCUUCGU CAC CG UUAC@LB@3'-UUU...GAUUC UA U AGCAC...GCG-5'@LB@ | |@LB@ 66 39@LB@@LB@@LB@Energy -16.12 kcal/mol@LB@Hybridization Energy -28.0575 kcal/mol@LB@Unfolding Energy - mRNA 8.63593 kcal/mol@LB@Unfolding Energy - sRNA 3.30476 kcal/mol@LB@@LB@Position - mRNA 179 -- 203@LB@Position - sRNA 40 -- 65@LB@Position Seed - mRNA 186 -- 192@LB@Position Seed - sRNA 52 -- 58@LB@ |
47 |
0.004313 |
0.2905 |
b3739 |
atpI |
-14.34 |
0.035947 |
179 -- 205 |
38 -- 58 |
ATP synthase membrane-bound accessory factor |
|
_____________178_________________________206\n_____________|___________________________|\n5'-GAA...UCGAA________GA____AAAAC________UGUGU...ACC-3'\n______________GGGAGCAG__GUGA_____GUGAUGUC\n______________||:||||:__||||_____|::|||||\n______________CCUUCGUU__CACU_____CGUUACAG\n3'-UUU...UAUGA________A__________________CACGA...GCG-5'\n_____________|___________________________|\n_____________59__________________________37\n |
199 -- 205 |
38 -- 44 |
-24.0387 kcal/mol |
6.48162 kcal/mol |
3.21639 kcal/mol |
178 206@LB@ | |@LB@5'-GAA...UCGAA GA AAAAC UGUGU...ACC-3'@LB@ GGGAGCAG GUGA GUGAUGUC@LB@ ||:||||: |||| |::|||||@LB@ CCUUCGUU CACU CGUUACAG@LB@3'-UUU...UAUGA A CACGA...GCG-5'@LB@ | |@LB@ 59 37@LB@@LB@@LB@Energy -14.34 kcal/mol@LB@Hybridization Energy -24.0387 kcal/mol@LB@Unfolding Energy - mRNA 6.48162 kcal/mol@LB@Unfolding Energy - sRNA 3.21639 kcal/mol@LB@@LB@Position - mRNA 179 -- 205@LB@Position - sRNA 38 -- 58@LB@Position Seed - mRNA 199 -- 205@LB@Position Seed - sRNA 38 -- 44@LB@ |
110 |
0.01171 |
0.3513 |
b0613 |
citG |
-15.71 |
0.020947 |
180 -- 206 |
37 -- 61 |
2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase |
|
_____________179_________________________207\n_____________|___________________________|\n5'-UGA...CAACC__A________C__C___A________AUGCC...UCA-3'\n______________GC_UGGAGGCA_UG_UGA_CGAUGUCG\n______________:|_||||:|||_||_|||_|:||||||\n______________UG_ACCUUCGU_AC_ACU_GUUACAGC\n3'-UUU...CAUUA___________U______C________ACGAA...GCG-5'\n_____________|___________________________|\n_____________62__________________________36\n |
200 -- 206 |
37 -- 43 |
-28.5741 kcal/mol |
9.5654 kcal/mol |
3.30158 kcal/mol |
179 207@LB@ | |@LB@5'-UGA...CAACC A C C A AUGCC...UCA-3'@LB@ GC UGGAGGCA UG UGA CGAUGUCG@LB@ :| ||||:||| || ||| |:||||||@LB@ UG ACCUUCGU AC ACU GUUACAGC@LB@3'-UUU...CAUUA U C ACGAA...GCG-5'@LB@ | |@LB@ 62 36@LB@@LB@@LB@Energy -15.71 kcal/mol@LB@Hybridization Energy -28.5741 kcal/mol@LB@Unfolding Energy - mRNA 9.5654 kcal/mol@LB@Unfolding Energy - sRNA 3.30158 kcal/mol@LB@@LB@Position - mRNA 180 -- 206@LB@Position - sRNA 37 -- 61@LB@Position Seed - mRNA 200 -- 206@LB@Position Seed - sRNA 37 -- 43@LB@ |
153 |
0.01881 |
0.4072 |
b3524 |
yhjG |
-16.11 |
0.017836 |
180 -- 208 |
42 -- 68 |
putative inner membrane-anchored periplasmic AsmA family protein |
|
_____________179____________________________209\n_____________|______________________________|\n5'-UUG...ACAGG_________GA________ACGA_______GGCAG...GAC-3'\n______________AAG_AAUAU__GGAAGCGA____UGAGCAA\n______________|||_||||:__||||||:|____|||||||\n______________UUC_UUAUG__CCUUCGUU____ACUCGUU\n3'-UUU...ACCGA___A_____A_________AC_________ACAGC...GCG-5'\n_____________|______________________________|\n_____________69_____________________________41\n |
202 -- 208 |
42 -- 48 |
-23.3114 kcal/mol |
3.89448 kcal/mol |
3.30492 kcal/mol |
179 209@LB@ | |@LB@5'-UUG...ACAGG GA ACGA GGCAG...GAC-3'@LB@ AAG AAUAU GGAAGCGA UGAGCAA@LB@ ||| ||||: ||||||:| |||||||@LB@ UUC UUAUG CCUUCGUU ACUCGUU@LB@3'-UUU...ACCGA A A AC ACAGC...GCG-5'@LB@ | |@LB@ 69 41@LB@@LB@@LB@Energy -16.11 kcal/mol@LB@Hybridization Energy -23.3114 kcal/mol@LB@Unfolding Energy - mRNA 3.89448 kcal/mol@LB@Unfolding Energy - sRNA 3.30492 kcal/mol@LB@@LB@Position - mRNA 180 -- 208@LB@Position - sRNA 42 -- 68@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 42 -- 48@LB@ |
52 |
0.004779 |
0.2905 |
b4122 |
fumB |
-12.31 |
0.079331 |
182 -- 204 |
48 -- 68 |
anaerobic class I fumarate hydratase (fumarase B) |
|
_____________181_____________________205\n_____________|_______________________|\n5'-UCC...AUACA____UACAG_________U____CAAAC...ACU-3'\n______________GAGU_____GCUGGAAGC_AUGU\n______________:|||_____:||||||||_||||\n______________UUCA_____UGACCUUCG_UACA\n3'-UUU...ACCGA____UUA___________U____CUCGU...GCG-5'\n_____________|_______________________|\n_____________69______________________47\n |
193 -- 199 |
53 -- 59 |
-20.6346 kcal/mol |
5.29507 kcal/mol |
3.03052 kcal/mol |
181 205@LB@ | |@LB@5'-UCC...AUACA UACAG U CAAAC...ACU-3'@LB@ GAGU GCUGGAAGC AUGU@LB@ :||| :|||||||| ||||@LB@ UUCA UGACCUUCG UACA@LB@3'-UUU...ACCGA UUA U CUCGU...GCG-5'@LB@ | |@LB@ 69 47@LB@@LB@@LB@Energy -12.31 kcal/mol@LB@Hybridization Energy -20.6346 kcal/mol@LB@Unfolding Energy - mRNA 5.29507 kcal/mol@LB@Unfolding Energy - sRNA 3.03052 kcal/mol@LB@@LB@Position - mRNA 182 -- 204@LB@Position - sRNA 48 -- 68@LB@Position Seed - mRNA 193 -- 199@LB@Position Seed - sRNA 53 -- 59@LB@ |
144 |
0.01729 |
0.3998 |
b2913 |
serA |
-13.50 |
0.049990 |
182 -- 221 |
55 -- 90 |
D-3-phosphoglycerate dehydrogenase |
|
_____________181______________________________________222\n_____________|________________________________________|\n5'-UGU...AUUUC_____A___G___G___AAA____AA_____UC_______AAAGA...CCA-3'\n______________AAAAG_CAG_AUU_GGU___UGGC__AGGUA__GCUGGAG\n______________|||||_|||_|::_||:___||||__|:|||__:|||||:\n______________UUUUC_GUC_UGG_CCG___ACCG__UUCAU__UGACCUU\n___________3'-_____G___G___G__________A______UA_______CGUUA...GCG-5'\n______________|_______________________________________|\n______________90______________________________________54\n |
215 -- 221 |
55 -- 61 |
-33.5694 kcal/mol |
6.44391 kcal/mol |
13.6256 kcal/mol |
181 222@LB@ | |@LB@5'-UGU...AUUUC A G G AAA AA UC AAAGA...CCA-3'@LB@ AAAAG CAG AUU GGU UGGC AGGUA GCUGGAG@LB@ ||||| ||| |:: ||: |||| |:||| :|||||:@LB@ UUUUC GUC UGG CCG ACCG UUCAU UGACCUU@LB@ 3'- G G G A UA CGUUA...GCG-5'@LB@ | |@LB@ 90 54@LB@@LB@@LB@Energy -13.50 kcal/mol@LB@Hybridization Energy -33.5694 kcal/mol@LB@Unfolding Energy - mRNA 6.44391 kcal/mol@LB@Unfolding Energy - sRNA 13.6256 kcal/mol@LB@@LB@Position - mRNA 182 -- 221@LB@Position - sRNA 55 -- 90@LB@Position Seed - mRNA 215 -- 221@LB@Position Seed - sRNA 55 -- 61@LB@ |
155 |
0.01913 |
0.4072 |
b2022 |
hisB |
-9.38 |
0.234588 |
182 -- 245 |
3 -- 62 |
histidinol-phosphatase and imidazoleglycerol-phosphate dehydratase |
|
_____________181__________________________________________________________________246\n_____________|____________________________________________________________________|\n5'-CAG...CGCCU___G__C_______GUU__A_____CAGAA___AU_____UA____GA______U__AAC________AGCGA...AAC-3'\n______________UAC_UG_GGAGCAA___UG_UGAGU______GU__CUUUU____UC__UCGCGA_GG____CCUGAUU\n______________|||_||_|:|||||___||_||||:______||__||||:____||__:|||||_||____||||||:\n______________AUG_AC_CUUCGUU___AC_ACUCG______CA__GAAAG____AG__GGCGCU_CC____GGACUAG\n3'-UUU...UCAUU_________________________UUACAG__C______UCCA__A_______C__AGAA_______CG-5'\n_____________|____________________________________________________________________|\n_____________63___________________________________________________________________2\n |
239 -- 245 |
3 -- 9 |
-38.4245 kcal/mol |
14.9226 kcal/mol |
14.1216 kcal/mol |
181 246@LB@ | |@LB@5'-CAG...CGCCU G C GUU A CAGAA AU UA GA U AAC AGCGA...AAC-3'@LB@ UAC UG GGAGCAA UG UGAGU GU CUUUU UC UCGCGA GG CCUGAUU@LB@ ||| || |:||||| || ||||: || ||||: || :||||| || ||||||:@LB@ AUG AC CUUCGUU AC ACUCG CA GAAAG AG GGCGCU CC GGACUAG@LB@3'-UUU...UCAUU UUACAG C UCCA A C AGAA CG-5'@LB@ | |@LB@ 63 2@LB@@LB@@LB@Energy -9.38 kcal/mol@LB@Hybridization Energy -38.4245 kcal/mol@LB@Unfolding Energy - mRNA 14.9226 kcal/mol@LB@Unfolding Energy - sRNA 14.1216 kcal/mol@LB@@LB@Position - mRNA 182 -- 245@LB@Position - sRNA 3 -- 62@LB@Position Seed - mRNA 239 -- 245@LB@Position Seed - sRNA 3 -- 9@LB@ |
84 |
0.008296 |
0.3318 |
b0892 |
rarA |
-13.69 |
0.046473 |
183 -- 215 |
37 -- 66 |
recombination intermediate processing DNA-dependent ATPase |
|
_____________182_________________________________216\n_____________|___________________________________|\n5'-CAA...UCAAC____GUA________CCUGA________UC_____CUCGA...AUU-3'\n______________GUAA_____GAGGCA_____GUGAGCAA__UGUCG\n______________||||_____||:|||_____||||||||__|||||\n______________CAUU_____CUUCGU_____CACUCGUU__ACAGC\n3'-UUU...CGAUU____AUGAC______UA__________________ACGAA...GCG-5'\n_____________|___________________________________|\n_____________67__________________________________36\n |
202 -- 208 |
42 -- 48 |
-25.9915 kcal/mol |
8.99953 kcal/mol |
3.30551 kcal/mol |
182 216@LB@ | |@LB@5'-CAA...UCAAC GUA CCUGA UC CUCGA...AUU-3'@LB@ GUAA GAGGCA GUGAGCAA UGUCG@LB@ |||| ||:||| |||||||| |||||@LB@ CAUU CUUCGU CACUCGUU ACAGC@LB@3'-UUU...CGAUU AUGAC UA ACGAA...GCG-5'@LB@ | |@LB@ 67 36@LB@@LB@@LB@Energy -13.69 kcal/mol@LB@Hybridization Energy -25.9915 kcal/mol@LB@Unfolding Energy - mRNA 8.99953 kcal/mol@LB@Unfolding Energy - sRNA 3.30551 kcal/mol@LB@@LB@Position - mRNA 183 -- 215@LB@Position - sRNA 37 -- 66@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 42 -- 48@LB@ |
94 |
0.009954 |
0.3393 |
b2208 |
napF |
-14.80 |
0.029998 |
183 -- 242 |
1 -- 65 |
ferredoxin-type protein role in electron transfer to periplasmic nitrate reductase NapA |
|
_____________182____________________________________________________________________243\n_____________|______________________________________________________________________|\n5'-CCA...CGCGU_____A______GU________AG_U__A_____A_____________U_____CAUA__CA________UGGCG...UUC-3'\n______________UAAUG_UGGAAG__CAAUGUGA__A_UG___UGC________UC_CCG_CGGGG____CU__CUGGUCGC\n______________||||:_||||||__||||||||__|_||___|||________||_|||_||:||____||__|||:||||\n______________AUUAU_ACCUUC__GUUACACU__U_AC___ACG________AG_GGC_GCUCC____GA__GACUAGCG\n3'-UUU...GAUUC_____G________________CG_U__AGC___AAAGUCCA__A_________CA____AG________-5'\n_____________|_____________________________________________________________________|\n_____________66____________________________________________________________________1\n |
236 -- 242 |
1 -- 7 |
-47.7557 kcal/mol |
18.8316 kcal/mol |
14.1245 kcal/mol |
182 243@LB@ | |@LB@5'-CCA...CGCGU A GU AG U A A U CAUA CA UGGCG...UUC-3'@LB@ UAAUG UGGAAG CAAUGUGA A UG UGC UC CCG CGGGG CU CUGGUCGC@LB@ ||||: |||||| |||||||| | || ||| || ||| ||:|| || |||:||||@LB@ AUUAU ACCUUC GUUACACU U AC ACG AG GGC GCUCC GA GACUAGCG@LB@3'-UUU...GAUUC G CG U AGC AAAGUCCA A CA AG -5'@LB@ | |@LB@ 66 1@LB@@LB@@LB@Energy -14.80 kcal/mol@LB@Hybridization Energy -47.7557 kcal/mol@LB@Unfolding Energy - mRNA 18.8316 kcal/mol@LB@Unfolding Energy - sRNA 14.1245 kcal/mol@LB@@LB@Position - mRNA 183 -- 242@LB@Position - sRNA 1 -- 65@LB@Position Seed - mRNA 236 -- 242@LB@Position Seed - sRNA 1 -- 7@LB@ |
11 |
0.000669 |
0.2043 |
b4154 |
frdA |
-13.85 |
0.043591 |
184 -- 204 |
34 -- 53 |
anaerobic fumarate reductase catalytic and NAD/flavoprotein subunit |
|
_____________183___________________205\n_____________|_____________________|\n5'-UAA...AAAAA____CUG___G__________AAACC...UCG-3'\n______________CAAU___GAG_AAUGUCGUGC\n______________||||___|||_||||||||||\n______________GUUA___CUC_UUACAGCACG\n3'-UUU...CCUUC____CA____G__________AAAGU...GCG-5'\n_____________|_____________________|\n_____________54____________________33\n |
198 -- 204 |
34 -- 40 |
-24.005 kcal/mol |
3.86794 kcal/mol |
6.28724 kcal/mol |
183 205@LB@ | |@LB@5'-UAA...AAAAA CUG G AAACC...UCG-3'@LB@ CAAU GAG AAUGUCGUGC@LB@ |||| ||| ||||||||||@LB@ GUUA CUC UUACAGCACG@LB@3'-UUU...CCUUC CA G AAAGU...GCG-5'@LB@ | |@LB@ 54 33@LB@@LB@@LB@Energy -13.85 kcal/mol@LB@Hybridization Energy -24.005 kcal/mol@LB@Unfolding Energy - mRNA 3.86794 kcal/mol@LB@Unfolding Energy - sRNA 6.28724 kcal/mol@LB@@LB@Position - mRNA 184 -- 204@LB@Position - sRNA 34 -- 53@LB@Position Seed - mRNA 198 -- 204@LB@Position Seed - sRNA 34 -- 40@LB@ |