| 86 |
0.008505 |
0.3323 |
b0879 |
macB |
-10.85 |
0.137944 |
147 -- 181 |
15 -- 61 |
macrolide ABC transporter peremase/ATPase |
|
_____________146_____________________________________________182\n_____________|_______________________________________________|\n5'-AAU...AAAGG___U__________________AA____________GA__G______CCAAA...CGG-3'\n______________GCU_GAAGC_____GGGCGAUG__GU_______GGU__UU_GUGAGG\n______________:||_|||||_____|:||:|||__||_______|||__|:_|:||||\n______________UGA_CUUCG_____CUCGUUAC__CA_______CCA__AG_CGCUCC\n3'-UUU...CAUUA___C_____UUACA________AG__CGAAAGU___AG__G______CAGAA...GCG-5'\n_____________|_______________________________________________|\n_____________62______________________________________________14\n |
157 -- 163 |
40 -- 46 |
-34.4359 kcal/mol |
9.61218 kcal/mol |
13.9754 kcal/mol |
146 182@LB@ | |@LB@5'-AAU...AAAGG U AA GA G CCAAA...CGG-3'@LB@ GCU GAAGC GGGCGAUG GU GGU UU GUGAGG@LB@ :|| ||||| |:||:||| || ||| |: |:||||@LB@ UGA CUUCG CUCGUUAC CA CCA AG CGCUCC@LB@3'-UUU...CAUUA C UUACA AG CGAAAGU AG G CAGAA...GCG-5'@LB@ | |@LB@ 62 14@LB@@LB@@LB@Energy -10.85 kcal/mol@LB@Hybridization Energy -34.4359 kcal/mol@LB@Unfolding Energy - mRNA 9.61218 kcal/mol@LB@Unfolding Energy - sRNA 13.9754 kcal/mol@LB@@LB@Position - mRNA 147 -- 181@LB@Position - sRNA 15 -- 61@LB@Position Seed - mRNA 157 -- 163@LB@Position Seed - sRNA 40 -- 46@LB@ |
| 108 |
0.01121 |
0.3489 |
b4195 |
ulaC |
-11.73 |
0.099158 |
148 -- 168 |
44 -- 62 |
L-ascorbate-specific enzyme IIA component of PTS |
|
_____________147___________________169\n_____________|_____________________|\n5'-GCG...GAAAC_____________CAAA____AUUUC...UGG-3'\n______________UGCUGGAAGUGAU____GAGC\n______________|:|||||||::||____||||\n______________AUGACCUUCGUUA____CUCG\n3'-UUU...UCAUU_____________CA______UUACA...GCG-5'\n_____________|_____________________|\n_____________63____________________43\n |
152 -- 158 |
52 -- 58 |
-21.7326 kcal/mol |
6.70621 kcal/mol |
3.30069 kcal/mol |
147 169@LB@ | |@LB@5'-GCG...GAAAC CAAA AUUUC...UGG-3'@LB@ UGCUGGAAGUGAU GAGC@LB@ |:|||||||::|| ||||@LB@ AUGACCUUCGUUA CUCG@LB@3'-UUU...UCAUU CA UUACA...GCG-5'@LB@ | |@LB@ 63 43@LB@@LB@@LB@Energy -11.73 kcal/mol@LB@Hybridization Energy -21.7326 kcal/mol@LB@Unfolding Energy - mRNA 6.70621 kcal/mol@LB@Unfolding Energy - sRNA 3.30069 kcal/mol@LB@@LB@Position - mRNA 148 -- 168@LB@Position - sRNA 44 -- 62@LB@Position Seed - mRNA 152 -- 158@LB@Position Seed - sRNA 52 -- 58@LB@ |
| 127 |
0.01387 |
0.3627 |
b1224 |
narG |
-12.01 |
0.089072 |
151 -- 160 |
37 -- 46 |
nitrate reductase 1 alpha subunit |
|
_____________150________161\n_____________|__________|\n5'-UAA...ACAUU__________AUUUA...AGG-3'\n______________AGCAAUGUCG\n______________||||||||||\n______________UCGUUACAGC\n3'-UUU...UACAC__________ACGAA...GCG-5'\n_____________|__________|\n_____________47_________36\n |
154 -- 160 |
37 -- 43 |
-14.8133 kcal/mol |
1.65076 kcal/mol |
1.15554 kcal/mol |
150 161@LB@ | |@LB@5'-UAA...ACAUU AUUUA...AGG-3'@LB@ AGCAAUGUCG@LB@ ||||||||||@LB@ UCGUUACAGC@LB@3'-UUU...UACAC ACGAA...GCG-5'@LB@ | |@LB@ 47 36@LB@@LB@@LB@Energy -12.01 kcal/mol@LB@Hybridization Energy -14.8133 kcal/mol@LB@Unfolding Energy - mRNA 1.65076 kcal/mol@LB@Unfolding Energy - sRNA 1.15554 kcal/mol@LB@@LB@Position - mRNA 151 -- 160@LB@Position - sRNA 37 -- 46@LB@Position Seed - mRNA 154 -- 160@LB@Position Seed - sRNA 37 -- 43@LB@ |
| 162 |
0.02022 |
0.4072 |
b3354 |
yheU |
-12.65 |
0.069641 |
153 -- 196 |
51 -- 89 |
UPF0270 family protein |
|
_____________152__________________________________________197\n_____________|____________________________________________|\n5'-CUG...UGGCU_______C___UU____A________CAAC___U__________AAUCA...GUA-3'\n______________GGAGUCA_GCA__CCUG_CUGGUUAA____GUA_CUGGAGGCGA\n______________::||:||_|||__||:|_||||:|||____:||_|||||:||:|\n______________UUUCGGU_CGU__GGGC_GACCGAUU____UAU_GACCUUCGUU\n__________3'-U_________________C________CAU_______________ACACU...GCG-5'\n_____________|____________________________________________|\n_____________90___________________________________________50\n |
189 -- 195 |
52 -- 58 |
-41.3188 kcal/mol |
14.1702 kcal/mol |
14.5017 kcal/mol |
152 197@LB@ | |@LB@5'-CUG...UGGCU C UU A CAAC U AAUCA...GUA-3'@LB@ GGAGUCA GCA CCUG CUGGUUAA GUA CUGGAGGCGA@LB@ ::||:|| ||| ||:| ||||:||| :|| |||||:||:|@LB@ UUUCGGU CGU GGGC GACCGAUU UAU GACCUUCGUU@LB@ 3'-U C CAU ACACU...GCG-5'@LB@ | |@LB@ 90 50@LB@@LB@@LB@Energy -12.65 kcal/mol@LB@Hybridization Energy -41.3188 kcal/mol@LB@Unfolding Energy - mRNA 14.1702 kcal/mol@LB@Unfolding Energy - sRNA 14.5017 kcal/mol@LB@@LB@Position - mRNA 153 -- 196@LB@Position - sRNA 51 -- 89@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 52 -- 58@LB@ |
| 120 |
0.0128 |
0.3585 |
b0445 |
ybaE |
-11.02 |
0.129416 |
154 -- 176 |
41 -- 63 |
putative ABC transporter periplasmic binding protein |
|
_____________153______________________177\n_____________|________________________|\n5'-CGU...GAUAU______________A____A____UAAAU...GUU-3'\n______________AUAC_GGAAGUAAU_GUGA_UAGU\n______________||||_|||||:|||_||||_:|:|\n______________UAUG_CCUUCGUUA_CACU_GUUA\n3'-UUU...UUCAU____A______________C____CAGCA...GCG-5'\n_____________|________________________|\n_____________64_______________________40\n |
159 -- 165 |
51 -- 57 |
-19.1991 kcal/mol |
4.87781 kcal/mol |
3.30177 kcal/mol |
153 177@LB@ | |@LB@5'-CGU...GAUAU A A UAAAU...GUU-3'@LB@ AUAC GGAAGUAAU GUGA UAGU@LB@ |||| |||||:||| |||| :|:|@LB@ UAUG CCUUCGUUA CACU GUUA@LB@3'-UUU...UUCAU A C CAGCA...GCG-5'@LB@ | |@LB@ 64 40@LB@@LB@@LB@Energy -11.02 kcal/mol@LB@Hybridization Energy -19.1991 kcal/mol@LB@Unfolding Energy - mRNA 4.87781 kcal/mol@LB@Unfolding Energy - sRNA 3.30177 kcal/mol@LB@@LB@Position - mRNA 154 -- 176@LB@Position - sRNA 41 -- 63@LB@Position Seed - mRNA 159 -- 165@LB@Position Seed - sRNA 51 -- 57@LB@ |
| 38 |
0.003171 |
0.2776 |
b0033 |
carB |
-16.38 |
0.016045 |
157 -- 203 |
40 -- 88 |
carbamoyl-phosphate synthase large subunit |
|
_____________156_________________________________________________204\n_____________|___________________________________________________|\n5'-GCA...UAAUU___________GUAAAACC____________A________AA_____C___CCAAA...CGU-3'\n______________GAG_CAGUACC________GCUAAGUAAU_C_GG_AGUAA___GAGC_AUG\n______________:||_|||:|||________||||||||||_|_||_||:||___||||_|||\n______________UUC_GUCGUGG________CGAUUCAUUA_G_CC_UCGUU___CUCG_UAC\n_________3'-UU___G_______GCCGAC____________U_A__U_____ACA____U___AGCAC...GCG-5'\n_____________|___________________________________________________|\n_____________89__________________________________________________39\n |
178 -- 184 |
62 -- 68 |
-37.8454 kcal/mol |
6.5567 kcal/mol |
14.9104 kcal/mol |
156 204@LB@ | |@LB@5'-GCA...UAAUU GUAAAACC A AA C CCAAA...CGU-3'@LB@ GAG CAGUACC GCUAAGUAAU C GG AGUAA GAGC AUG@LB@ :|| |||:||| |||||||||| | || ||:|| |||| |||@LB@ UUC GUCGUGG CGAUUCAUUA G CC UCGUU CUCG UAC@LB@ 3'-UU G GCCGAC U A U ACA U AGCAC...GCG-5'@LB@ | |@LB@ 89 39@LB@@LB@@LB@Energy -16.38 kcal/mol@LB@Hybridization Energy -37.8454 kcal/mol@LB@Unfolding Energy - mRNA 6.5567 kcal/mol@LB@Unfolding Energy - sRNA 14.9104 kcal/mol@LB@@LB@Position - mRNA 157 -- 203@LB@Position - sRNA 40 -- 88@LB@Position Seed - mRNA 178 -- 184@LB@Position Seed - sRNA 62 -- 68@LB@ |
| 149 |
0.01819 |
0.4072 |
b2708 |
srlQ |
-10.57 |
0.153166 |
157 -- 203 |
40 -- 61 |
D-arabinose 5-phosphate isomerase |
|
_____________156_____________________________________________204\n_____________|_______________________________________________|\n5'-UAC...CAGGC________AGAAAGGGAU______GAUCAUAACCGGAGA________AGUGA...GCG-3'\n______________GCUGGAAG__________CGAUGU_______________GAGCAAUG\n______________:|||||||__________|:||||_______________||||||||\n______________UGACCUUC__________GUUACA_______________CUCGUUAC\n3'-UUU...CAUUA_______________________________________________AGCAC...GCG-5'\n_____________|_______________________________________________|\n_____________62______________________________________________39\n |
197 -- 203 |
40 -- 46 |
-23.3244 kcal/mol |
9.45822 kcal/mol |
3.30075 kcal/mol |
156 204@LB@ | |@LB@5'-UAC...CAGGC AGAAAGGGAU GAUCAUAACCGGAGA AGUGA...GCG-3'@LB@ GCUGGAAG CGAUGU GAGCAAUG@LB@ :||||||| |:|||| ||||||||@LB@ UGACCUUC GUUACA CUCGUUAC@LB@3'-UUU...CAUUA AGCAC...GCG-5'@LB@ | |@LB@ 62 39@LB@@LB@@LB@Energy -10.57 kcal/mol@LB@Hybridization Energy -23.3244 kcal/mol@LB@Unfolding Energy - mRNA 9.45822 kcal/mol@LB@Unfolding Energy - sRNA 3.30075 kcal/mol@LB@@LB@Position - mRNA 157 -- 203@LB@Position - sRNA 40 -- 61@LB@Position Seed - mRNA 197 -- 203@LB@Position Seed - sRNA 40 -- 46@LB@ |
| 56 |
0.005166 |
0.2905 |
b0152 |
fhuD |
-11.53 |
0.106927 |
159 -- 195 |
38 -- 86 |
iron(3+)-hydroxamate import ABC transporter periplasmic binding protein |
|
_____________158________________________________________________196\n_____________|__________________________________________________|\n5'-ACG...AUUUU_____________G___GCU_______________CC_______UU____UAUUG...UUG-3'\n______________GCC_GCAUCCGGC_GGU_______________GCA__UGUGAGU__UGUU\n______________|||_|||:|||||_||:_______________|||__||||||:__|||:\n______________CGG_CGUGGGCCG_CCG_______________CGU__ACACUCG__ACAG\n_______3'-UUUU___U_________A___AUUCAUUAUGACCUU___U________UU____CACGA...GCG-5'\n_____________|__________________________________________________|\n_____________87_________________________________________________37\n |
183 -- 189 |
44 -- 50 |
-42.47 kcal/mol |
16.0325 kcal/mol |
14.9106 kcal/mol |
158 196@LB@ | |@LB@5'-ACG...AUUUU G GCU CC UU UAUUG...UUG-3'@LB@ GCC GCAUCCGGC GGU GCA UGUGAGU UGUU@LB@ ||| |||:||||| ||: ||| ||||||: |||:@LB@ CGG CGUGGGCCG CCG CGU ACACUCG ACAG@LB@ 3'-UUUU U A AUUCAUUAUGACCUU U UU CACGA...GCG-5'@LB@ | |@LB@ 87 37@LB@@LB@@LB@Energy -11.53 kcal/mol@LB@Hybridization Energy -42.47 kcal/mol@LB@Unfolding Energy - mRNA 16.0325 kcal/mol@LB@Unfolding Energy - sRNA 14.9106 kcal/mol@LB@@LB@Position - mRNA 159 -- 195@LB@Position - sRNA 38 -- 86@LB@Position Seed - mRNA 183 -- 189@LB@Position Seed - sRNA 44 -- 50@LB@ |
| 22 |
0.001794 |
0.2682 |
b1992 |
cobS |
-11.39 |
0.112398 |
162 -- 208 |
42 -- 83 |
cobalamin synthase |
|
_____________161________________________________________________209\n_____________|__________________________________________________|\n5'-GAG...AAUGA______________GGUUUCG______________AAAUCAAA_______AUUAU...GUA-3'\n______________AGUAU__GGCUGGU_______GGUAUUGG_AGUAA________UGAGUAA\n______________||:|:__||||||:_______::||:|||_||:||________||||:||\n______________UCGUG__CCGACCG_______UUAUGACC_UCGUU________ACUCGUU\n____3'-UUUUCGG_____GG_______AUUCA__________U_____AC_____________ACAGC...GCG-5'\n_____________|__________________________________________________|\n_____________84_________________________________________________41\n |
202 -- 208 |
42 -- 48 |
-33.2748 kcal/mol |
6.99193 kcal/mol |
14.8879 kcal/mol |
161 209@LB@ | |@LB@5'-GAG...AAUGA GGUUUCG AAAUCAAA AUUAU...GUA-3'@LB@ AGUAU GGCUGGU GGUAUUGG AGUAA UGAGUAA@LB@ ||:|: ||||||: ::||:||| ||:|| ||||:||@LB@ UCGUG CCGACCG UUAUGACC UCGUU ACUCGUU@LB@ 3'-UUUUCGG GG AUUCA U AC ACAGC...GCG-5'@LB@ | |@LB@ 84 41@LB@@LB@@LB@Energy -11.39 kcal/mol@LB@Hybridization Energy -33.2748 kcal/mol@LB@Unfolding Energy - mRNA 6.99193 kcal/mol@LB@Unfolding Energy - sRNA 14.8879 kcal/mol@LB@@LB@Position - mRNA 162 -- 208@LB@Position - sRNA 42 -- 83@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 42 -- 48@LB@ |
| 100 |
0.01027 |
0.3393 |
b0661 |
miaB |
-11.26 |
0.118120 |
162 -- 200 |
37 -- 86 |
tRNA-i(6)A37 methylthiotransferase |
|
_____________161_________________________________________________201\n_____________|___________________________________________________|\n5'-CGC...UAUGC___CU_______________C________UC____________________AUGAC...AAC-3'\n______________GCC__GCAUUC__CUGGCUA_____UAUU____GCAA___GAGCAA_GUCG\n______________|||__|||::|__|||||||_____||:|____||||___||||||_||||\n______________CGG__CGUGGG__GACCGAU_____AUGA____CGUU___CUCGUU_CAGC\n_______3'-UUUU___U_______CC_______UCAUU____CCUU____ACA______A____ACGAA...GCG-5'\n_____________|___________________________________________________|\n_____________87__________________________________________________36\n |
173 -- 179 |
68 -- 74 |
-35.2592 kcal/mol |
9.08526 kcal/mol |
14.9108 kcal/mol |
161 201@LB@ | |@LB@5'-CGC...UAUGC CU C UC AUGAC...AAC-3'@LB@ GCC GCAUUC CUGGCUA UAUU GCAA GAGCAA GUCG@LB@ ||| |||::| ||||||| ||:| |||| |||||| ||||@LB@ CGG CGUGGG GACCGAU AUGA CGUU CUCGUU CAGC@LB@ 3'-UUUU U CC UCAUU CCUU ACA A ACGAA...GCG-5'@LB@ | |@LB@ 87 36@LB@@LB@@LB@Energy -11.26 kcal/mol@LB@Hybridization Energy -35.2592 kcal/mol@LB@Unfolding Energy - mRNA 9.08526 kcal/mol@LB@Unfolding Energy - sRNA 14.9108 kcal/mol@LB@@LB@Position - mRNA 162 -- 200@LB@Position - sRNA 37 -- 86@LB@Position Seed - mRNA 173 -- 179@LB@Position Seed - sRNA 68 -- 74@LB@ |
