| 9 |
0.0004314 |
0.161 |
b1647 |
ydhF |
-17.39 |
0.010703 |
25 -- 48 |
37 -- 61 |
putative oxidoreductase |
|
_____________24________________________49\n_____________|_________________________|\n5'-UUC...UUUUA___________AA_________G__AAAAA...AGC-3'\n______________ACUGGAA_UAA__UGAGCGAUG_CG\n______________|||||||_:||__|||||:|||_||\n______________UGACCUU_GUU__ACUCGUUAC_GC\n3'-UUU...CAUUA_______C___AC_________A__ACGAA...GCG-5'\n_____________|_________________________|\n_____________62________________________36\n |
39 -- 45 |
40 -- 46 |
-25.2966 kcal/mol |
4.60014 kcal/mol |
3.30158 kcal/mol |
24 49@LB@ | |@LB@5'-UUC...UUUUA AA G AAAAA...AGC-3'@LB@ ACUGGAA UAA UGAGCGAUG CG@LB@ ||||||| :|| |||||:||| ||@LB@ UGACCUU GUU ACUCGUUAC GC@LB@3'-UUU...CAUUA C AC A ACGAA...GCG-5'@LB@ | |@LB@ 62 36@LB@@LB@@LB@Energy -17.39 kcal/mol@LB@Hybridization Energy -25.2966 kcal/mol@LB@Unfolding Energy - mRNA 4.60014 kcal/mol@LB@Unfolding Energy - sRNA 3.30158 kcal/mol@LB@@LB@Position - mRNA 25 -- 48@LB@Position - sRNA 37 -- 61@LB@Position Seed - mRNA 39 -- 45@LB@Position Seed - sRNA 40 -- 46@LB@ |
| 29 |
0.002852 |
0.2776 |
b3779 |
gpp |
-14.27 |
0.036904 |
25 -- 63 |
25 -- 66 |
guanosine pentaphosphatase/exopolyphosphatase |
|
_____________24__________________________________________64\n_____________|___________________________________________|\n5'-GCC...UCCGC__C_______C___UCC___C_____C_______G________AAAUA...UGA-3'\n______________GU_GUACUGG__GC_____G_GUAAU_GUCGU_C_UUCAGGUU\n______________||_:||||||__||_____|_|:|||_|||||_|_||||||||\n______________CA_UAUGACC__CG_____C_CGUUA_CAGCA_G_AAGUCCAA\n3'-UUU...CGAUU__U_______UU__UUACA_U___________C_A________GAGGC...GCG-5'\n_____________|___________________________________________|\n_____________67__________________________________________24\n |
57 -- 63 |
25 -- 31 |
-32.1436 kcal/mol |
9.87719 kcal/mol |
7.99254 kcal/mol |
24 64@LB@ | |@LB@5'-GCC...UCCGC C C UCC C C G AAAUA...UGA-3'@LB@ GU GUACUGG GC G GUAAU GUCGU C UUCAGGUU@LB@ || :|||||| || | |:||| ||||| | ||||||||@LB@ CA UAUGACC CG C CGUUA CAGCA G AAGUCCAA@LB@3'-UUU...CGAUU U UU UUACA U C A GAGGC...GCG-5'@LB@ | |@LB@ 67 24@LB@@LB@@LB@Energy -14.27 kcal/mol@LB@Hybridization Energy -32.1436 kcal/mol@LB@Unfolding Energy - mRNA 9.87719 kcal/mol@LB@Unfolding Energy - sRNA 7.99254 kcal/mol@LB@@LB@Position - mRNA 25 -- 63@LB@Position - sRNA 25 -- 66@LB@Position Seed - mRNA 57 -- 63@LB@Position Seed - sRNA 25 -- 31@LB@ |
| 41 |
0.003449 |
0.2776 |
b1908 |
yecA |
-17.18 |
0.011646 |
29 -- 47 |
36 -- 56 |
UPF0149 family protein |
|
_____________28____________________48\n_____________|_____________________|\n5'-UAC...AAUCA_______A_____________GAAAC...UGG-3'\n______________AAGCAAU___AGCAGUGUCGU\n______________|||||||___||||:||||||\n______________UUCGUUA___UCGUUACAGCA\n3'-UUU...UGACC_______CAC___________CGAAA...GCG-5'\n_____________|_____________________|\n_____________57____________________35\n |
41 -- 47 |
36 -- 42 |
-23.2486 kcal/mol |
2.84047 kcal/mol |
3.225 kcal/mol |
28 48@LB@ | |@LB@5'-UAC...AAUCA A GAAAC...UGG-3'@LB@ AAGCAAU AGCAGUGUCGU@LB@ ||||||| ||||:||||||@LB@ UUCGUUA UCGUUACAGCA@LB@3'-UUU...UGACC CAC CGAAA...GCG-5'@LB@ | |@LB@ 57 35@LB@@LB@@LB@Energy -17.18 kcal/mol@LB@Hybridization Energy -23.2486 kcal/mol@LB@Unfolding Energy - mRNA 2.84047 kcal/mol@LB@Unfolding Energy - sRNA 3.225 kcal/mol@LB@@LB@Position - mRNA 29 -- 47@LB@Position - sRNA 36 -- 56@LB@Position Seed - mRNA 41 -- 47@LB@Position Seed - sRNA 36 -- 42@LB@ |
| 142 |
0.01677 |
0.3964 |
b3208 |
mtgA |
-9.50 |
0.224857 |
30 -- 43 |
54 -- 67 |
biosynthetic peptidoglycan transglycosylase |
|
_____________29_____________44\n_____________|______________|\n5'-UUG...ACCGC__A___________AGAUG...UGU-3'\n______________AG_AGUGCUGGAAG\n______________||_|:|:|||||||\n______________UC_UUAUGACCUUC\n3'-UUU...CCGAU__A___________GUUAC...GCG-5'\n_____________|______________|\n_____________68_____________53\n |
37 -- 43 |
54 -- 60 |
-16.1342 kcal/mol |
3.92242 kcal/mol |
2.71077 kcal/mol |
29 44@LB@ | |@LB@5'-UUG...ACCGC A AGAUG...UGU-3'@LB@ AG AGUGCUGGAAG@LB@ || |:|:|||||||@LB@ UC UUAUGACCUUC@LB@3'-UUU...CCGAU A GUUAC...GCG-5'@LB@ | |@LB@ 68 53@LB@@LB@@LB@Energy -9.50 kcal/mol@LB@Hybridization Energy -16.1342 kcal/mol@LB@Unfolding Energy - mRNA 3.92242 kcal/mol@LB@Unfolding Energy - sRNA 2.71077 kcal/mol@LB@@LB@Position - mRNA 30 -- 43@LB@Position - sRNA 54 -- 67@LB@Position Seed - mRNA 37 -- 43@LB@Position Seed - sRNA 54 -- 60@LB@ |
| 133 |
0.0147 |
0.3709 |
b3832 |
rmuC |
-11.93 |
0.091595 |
31 -- 71 |
21 -- 63 |
DNA recombination protein |
|
_____________30________________________________________________72\n_____________|_________________________________________________|\n5'-AAA...AAAUC___G_________________C______CU___GUAA___UC_______UGUCU...AGC-3'\n______________GUG_UGGAAGC______GGCG__GUCGU__GCU____UUC___UUCUCC\n______________:|:_|||||||______:||:__|||||__|||____|||___||||||\n______________UAU_ACCUUCG______UCGU__CAGCA__CGA____AAG___AAGAGG\n3'-UUU...UUCAU___G_______UUACAC____UA_________________UCC______CGCUC...GCG-5'\n_____________|_________________________________________________|\n_____________64________________________________________________20\n |
35 -- 41 |
53 -- 59 |
-30.4211 kcal/mol |
10.4952 kcal/mol |
7.99187 kcal/mol |
30 72@LB@ | |@LB@5'-AAA...AAAUC G C CU GUAA UC UGUCU...AGC-3'@LB@ GUG UGGAAGC GGCG GUCGU GCU UUC UUCUCC@LB@ :|: ||||||| :||: ||||| ||| ||| ||||||@LB@ UAU ACCUUCG UCGU CAGCA CGA AAG AAGAGG@LB@3'-UUU...UUCAU G UUACAC UA UCC CGCUC...GCG-5'@LB@ | |@LB@ 64 20@LB@@LB@@LB@Energy -11.93 kcal/mol@LB@Hybridization Energy -30.4211 kcal/mol@LB@Unfolding Energy - mRNA 10.4952 kcal/mol@LB@Unfolding Energy - sRNA 7.99187 kcal/mol@LB@@LB@Position - mRNA 31 -- 71@LB@Position - sRNA 21 -- 63@LB@Position Seed - mRNA 35 -- 41@LB@Position Seed - sRNA 53 -- 59@LB@ |
| 44 |
0.003649 |
0.2787 |
b0147 |
ligT |
-12.24 |
0.081601 |
33 -- 98 |
26 -- 85 |
2'-5' RNA ligase |
|
_____________32____________________________________________________________________99\n_____________|_____________________________________________________________________|\n5'-CCA...AUUUC____________C___GCACUUAA_____C___C__C___CAAUCGA_______AA___AA________AAGAC...CGG-3'\n______________CCGGC_CCCGGU_GGC________UAAUA_CUG_GG_GCA_______GAGCGGU___GU___UUCAGGU\n______________||:||_|||||:_|||________|||||_|||_|:_|||_______||||::|___||___|||||||\n______________GGUCG_GGGCCG_CCG________AUUAU_GAC_CU_CGU_______CUCGUUA___CA___AAGUCCA\n______3'-UUUUC_____U______A___AUUC________________U___UACA__________CAG__CGA_______AGAGG...GCG-5'\n_____________|_____________________________________________________________________|\n_____________86____________________________________________________________________25\n |
92 -- 98 |
26 -- 32 |
-49.8324 kcal/mol |
18.0057 kcal/mol |
19.5911 kcal/mol |
32 99@LB@ | |@LB@5'-CCA...AUUUC C GCACUUAA C C C CAAUCGA AA AA AAGAC...CGG-3'@LB@ CCGGC CCCGGU GGC UAAUA CUG GG GCA GAGCGGU GU UUCAGGU@LB@ ||:|| |||||: ||| ||||| ||| |: ||| ||||::| || |||||||@LB@ GGUCG GGGCCG CCG AUUAU GAC CU CGU CUCGUUA CA AAGUCCA@LB@ 3'-UUUUC U A AUUC U UACA CAG CGA AGAGG...GCG-5'@LB@ | |@LB@ 86 25@LB@@LB@@LB@Energy -12.24 kcal/mol@LB@Hybridization Energy -49.8324 kcal/mol@LB@Unfolding Energy - mRNA 18.0057 kcal/mol@LB@Unfolding Energy - sRNA 19.5911 kcal/mol@LB@@LB@Position - mRNA 33 -- 98@LB@Position - sRNA 26 -- 85@LB@Position Seed - mRNA 92 -- 98@LB@Position Seed - sRNA 26 -- 32@LB@ |
| 152 |
0.0188 |
0.4072 |
b0950 |
pqiA |
-8.64 |
0.302533 |
34 -- 75 |
1 -- 61 |
paraquat-inducible SoxRS-regulated inner membrane protein |
|
_____________33_____________________________________________________________76\n_____________|______________________________________________________________|\n5'-CUG...UGAAC__________UCU__A______________________AAAAAAU_____GG__________AAAAU...GUC-3'\n______________GCUGGGAGUA___UG_AGC________________GUU_________GGU____CUGAUCGC\n______________:||||:||:|___||_|||________________|||_________|||____||||||||\n______________UGACCUUCGU___AC_UCG________________CAA_________CCA____GACUAGCG\n3'-UUU...CAUUA__________UAC______UUACAGCACGAAAGUC___GAGGCGCUC___GAAG________-5'\n_____________|_____________________________________________________________|\n_____________62____________________________________________________________1\n |
69 -- 75 |
1 -- 7 |
-32.0531 kcal/mol |
9.29686 kcal/mol |
14.1206 kcal/mol |
33 76@LB@ | |@LB@5'-CUG...UGAAC UCU A AAAAAAU GG AAAAU...GUC-3'@LB@ GCUGGGAGUA UG AGC GUU GGU CUGAUCGC@LB@ :||||:||:| || ||| ||| ||| ||||||||@LB@ UGACCUUCGU AC UCG CAA CCA GACUAGCG@LB@3'-UUU...CAUUA UAC UUACAGCACGAAAGUC GAGGCGCUC GAAG -5'@LB@ | |@LB@ 62 1@LB@@LB@@LB@Energy -8.64 kcal/mol@LB@Hybridization Energy -32.0531 kcal/mol@LB@Unfolding Energy - mRNA 9.29686 kcal/mol@LB@Unfolding Energy - sRNA 14.1206 kcal/mol@LB@@LB@Position - mRNA 34 -- 75@LB@Position - sRNA 1 -- 61@LB@Position Seed - mRNA 69 -- 75@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 67 |
0.005865 |
0.2905 |
b4138 |
dcuA |
-11.52 |
0.107256 |
35 -- 44 |
73 -- 82 |
C4-dicarboxylate antiporter |
|
_____________34_________45\n_____________|__________|\n5'-AAC...CUGAU__________UACAA...UGG-3'\n______________GCACCCGGCU\n______________||||||||||\n______________CGUGGGCCGA\n___3'-UUUUCGGU__________CCGAU...GCG-5'\n_____________|__________|\n_____________83_________72\n |
38 -- 44 |
73 -- 79 |
-22.0144 kcal/mol |
2.69052 kcal/mol |
7.80512 kcal/mol |
34 45@LB@ | |@LB@5'-AAC...CUGAU UACAA...UGG-3'@LB@ GCACCCGGCU@LB@ ||||||||||@LB@ CGUGGGCCGA@LB@ 3'-UUUUCGGU CCGAU...GCG-5'@LB@ | |@LB@ 83 72@LB@@LB@@LB@Energy -11.52 kcal/mol@LB@Hybridization Energy -22.0144 kcal/mol@LB@Unfolding Energy - mRNA 2.69052 kcal/mol@LB@Unfolding Energy - sRNA 7.80512 kcal/mol@LB@@LB@Position - mRNA 35 -- 44@LB@Position - sRNA 73 -- 82@LB@Position Seed - mRNA 38 -- 44@LB@Position Seed - sRNA 73 -- 79@LB@ |
| 112 |
0.01186 |
0.3513 |
b2021 |
hisC |
-13.06 |
0.059267 |
35 -- 113 |
9 -- 85 |
histidinol-phosphate aminotransferase |
|
_____________34___________________________________________________________________________________114\n_____________|____________________________________________________________________________________|\n5'-GUU...CUGUU_____C__G___________AUUUCCA_______C___ACC_UAC__G__C_____AAAGAG_____________CU_______AACCA...GGC-3'\n______________CCAGC_UC_GGCUGGC__AG________GAAGCG_AUG___G___AG_AA_UGUCG_______GGGUUCUCCGCG__GG_CUUC\n______________|||||_:|_|||||||__||________|||||:_|||___|___||_||_|||||_______:|||||||||||__||_||||\n______________GGUCG_GG_CCGACCG__UC________CUUCGU_UAC___C___UC_UU_ACAGC_______UCCAAGAGGCGC__CC_GAAG\n______3'-UUUUC_____U__G_______AU__AUUAUGAC__________A________G________ACGAAAG____________UC__A____GACUAGCG-5'\n_____________|____________________________________________________________________________________|\n_____________86___________________________________________________________________________________8\n |
99 -- 105 |
18 -- 24 |
-69.7784 kcal/mol |
31.0124 kcal/mol |
25.703 kcal/mol |
34 114@LB@ | |@LB@5'-GUU...CUGUU C G AUUUCCA C ACC UAC G C AAAGAG CU AACCA...GGC-3'@LB@ CCAGC UC GGCUGGC AG GAAGCG AUG G AG AA UGUCG GGGUUCUCCGCG GG CUUC@LB@ ||||| :| ||||||| || |||||: ||| | || || ||||| :||||||||||| || ||||@LB@ GGUCG GG CCGACCG UC CUUCGU UAC C UC UU ACAGC UCCAAGAGGCGC CC GAAG@LB@ 3'-UUUUC U G AU AUUAUGAC A G ACGAAAG UC A GACUAGCG-5'@LB@ | |@LB@ 86 8@LB@@LB@@LB@Energy -13.06 kcal/mol@LB@Hybridization Energy -69.7784 kcal/mol@LB@Unfolding Energy - mRNA 31.0124 kcal/mol@LB@Unfolding Energy - sRNA 25.703 kcal/mol@LB@@LB@Position - mRNA 35 -- 113@LB@Position - sRNA 9 -- 85@LB@Position Seed - mRNA 99 -- 105@LB@Position Seed - sRNA 18 -- 24@LB@ |
| 177 |
0.02193 |
0.4113 |
b4136 |
dsbD |
-10.49 |
0.157561 |
37 -- 60 |
42 -- 62 |
thiol:disulfide interchange protein and activator of DsbC |
|
_____________36_______________________61\n_____________|________________________|\n5'-UGC...UCUAU_______AA_____GCUG______GAAUA...CGG-3'\n______________UACUGGG__GGUAA____GAGCAA\n______________||||||:__:|:||____||||||\n______________AUGACCU__UCGUU____CUCGUU\n3'-UUU...UCAUU______________ACA_______ACAGC...GCG-5'\n_____________|________________________|\n_____________63_______________________41\n |
37 -- 43 |
56 -- 62 |
-20.3754 kcal/mol |
6.58529 kcal/mol |
3.30151 kcal/mol |
36 61@LB@ | |@LB@5'-UGC...UCUAU AA GCUG GAAUA...CGG-3'@LB@ UACUGGG GGUAA GAGCAA@LB@ ||||||: :|:|| ||||||@LB@ AUGACCU UCGUU CUCGUU@LB@3'-UUU...UCAUU ACA ACAGC...GCG-5'@LB@ | |@LB@ 63 41@LB@@LB@@LB@Energy -10.49 kcal/mol@LB@Hybridization Energy -20.3754 kcal/mol@LB@Unfolding Energy - mRNA 6.58529 kcal/mol@LB@Unfolding Energy - sRNA 3.30151 kcal/mol@LB@@LB@Position - mRNA 37 -- 60@LB@Position - sRNA 42 -- 62@LB@Position Seed - mRNA 37 -- 43@LB@Position Seed - sRNA 56 -- 62@LB@ |
