| 51 |
0.00476 |
0.2905 |
b3607 |
cysE |
-15.05 |
0.027128 |
184 -- 209 |
34 -- 63 |
serine acetyltransferase |
|
_____________183_____________________________210\n_____________|_______________________________|\n5'-CGG...AUCUC__CG__U________________________GAAGA...CGA-3'\n______________AU__UG_GGAGUA_____AGCAAUGUCGUGU\n______________||__||_|:||:|_____||||||||||||:\n______________UA__AC_CUUCGU_____UCGUUACAGCACG\n3'-UUU...UUCAU__UG_________UACAC_____________AAAGU...GCG-5'\n_____________|_______________________________|\n_____________64______________________________33\n |
203 -- 209 |
34 -- 40 |
-26.8035 kcal/mol |
4.97985 kcal/mol |
6.76935 kcal/mol |
183 210@LB@ | |@LB@5'-CGG...AUCUC CG U GAAGA...CGA-3'@LB@ AU UG GGAGUA AGCAAUGUCGUGU@LB@ || || |:||:| ||||||||||||:@LB@ UA AC CUUCGU UCGUUACAGCACG@LB@3'-UUU...UUCAU UG UACAC AAAGU...GCG-5'@LB@ | |@LB@ 64 33@LB@@LB@@LB@Energy -15.05 kcal/mol@LB@Hybridization Energy -26.8035 kcal/mol@LB@Unfolding Energy - mRNA 4.97985 kcal/mol@LB@Unfolding Energy - sRNA 6.76935 kcal/mol@LB@@LB@Position - mRNA 184 -- 209@LB@Position - sRNA 34 -- 63@LB@Position Seed - mRNA 203 -- 209@LB@Position Seed - sRNA 34 -- 40@LB@ |
| 135 |
0.0153 |
0.379 |
b1245 |
oppC |
-10.91 |
0.134968 |
184 -- 214 |
42 -- 65 |
oligopeptide ABC transporter permease |
|
_____________183_____________________________215\n_____________|_______________________________|\n5'-GGU...GUUAC___________CUC______A__UUA_____GAAAA...UUA-3'\n______________UGAUACUGGAG___GCGAUG_UG___AGUAA\n______________|:||||||||:___||:|||_||___||:||\n______________AUUAUGACCUU___CGUUAC_AC___UCGUU\n3'-UUU...GAUUC_______________________________ACAGC...GCG-5'\n_____________|_______________________________|\n_____________66______________________________41\n |
188 -- 194 |
55 -- 61 |
-22.5581 kcal/mol |
8.34668 kcal/mol |
3.30456 kcal/mol |
183 215@LB@ | |@LB@5'-GGU...GUUAC CUC A UUA GAAAA...UUA-3'@LB@ UGAUACUGGAG GCGAUG UG AGUAA@LB@ |:||||||||: ||:||| || ||:||@LB@ AUUAUGACCUU CGUUAC AC UCGUU@LB@3'-UUU...GAUUC ACAGC...GCG-5'@LB@ | |@LB@ 66 41@LB@@LB@@LB@Energy -10.91 kcal/mol@LB@Hybridization Energy -22.5581 kcal/mol@LB@Unfolding Energy - mRNA 8.34668 kcal/mol@LB@Unfolding Energy - sRNA 3.30456 kcal/mol@LB@@LB@Position - mRNA 184 -- 214@LB@Position - sRNA 42 -- 65@LB@Position Seed - mRNA 188 -- 194@LB@Position Seed - sRNA 55 -- 61@LB@ |
| 90 |
0.009279 |
0.3393 |
b0817 |
mntR |
-11.60 |
0.104050 |
186 -- 211 |
37 -- 65 |
Mn(2+)-responsive manganese regulon transcriptional regulator |
|
_____________185___________________________212\n_____________|_____________________________|\n5'-CUU...CACCA_____A________CAA_____C______CGCAG...AUC-3'\n______________UAAUG__GGAAGCA___UGAGU___GUCG\n______________||||:__|||||||___||||:___||||\n______________AUUAU__CCUUCGU___ACUCG___CAGC\n3'-UUU...GAUUC_____GA_______UAC_____UUA____ACGAA...GCG-5'\n_____________|_____________________________|\n_____________66____________________________36\n |
192 -- 198 |
52 -- 58 |
-22.6144 kcal/mol |
7.71005 kcal/mol |
3.30549 kcal/mol |
185 212@LB@ | |@LB@5'-CUU...CACCA A CAA C CGCAG...AUC-3'@LB@ UAAUG GGAAGCA UGAGU GUCG@LB@ ||||: ||||||| ||||: ||||@LB@ AUUAU CCUUCGU ACUCG CAGC@LB@3'-UUU...GAUUC GA UAC UUA ACGAA...GCG-5'@LB@ | |@LB@ 66 36@LB@@LB@@LB@Energy -11.60 kcal/mol@LB@Hybridization Energy -22.6144 kcal/mol@LB@Unfolding Energy - mRNA 7.71005 kcal/mol@LB@Unfolding Energy - sRNA 3.30549 kcal/mol@LB@@LB@Position - mRNA 186 -- 211@LB@Position - sRNA 37 -- 65@LB@Position Seed - mRNA 192 -- 198@LB@Position Seed - sRNA 52 -- 58@LB@ |
| 170 |
0.02096 |
0.4072 |
b2283 |
nuoG |
-12.68 |
0.068788 |
186 -- 195 |
52 -- 61 |
NADH:ubiquinone oxidoreductase chain G |
|
_____________185________196\n_____________|__________|\n5'-CUG...AGAAA__________UGCUA...UUU-3'\n______________ACUGGAAGCA\n______________||||||||||\n______________UGACCUUCGU\n3'-UUU...CAUUA__________UACAC...GCG-5'\n_____________|__________|\n_____________62_________51\n |
189 -- 195 |
52 -- 58 |
-16.7738 kcal/mol |
1.20687 kcal/mol |
2.88813 kcal/mol |
185 196@LB@ | |@LB@5'-CUG...AGAAA UGCUA...UUU-3'@LB@ ACUGGAAGCA@LB@ ||||||||||@LB@ UGACCUUCGU@LB@3'-UUU...CAUUA UACAC...GCG-5'@LB@ | |@LB@ 62 51@LB@@LB@@LB@Energy -12.68 kcal/mol@LB@Hybridization Energy -16.7738 kcal/mol@LB@Unfolding Energy - mRNA 1.20687 kcal/mol@LB@Unfolding Energy - sRNA 2.88813 kcal/mol@LB@@LB@Position - mRNA 186 -- 195@LB@Position - sRNA 52 -- 61@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 52 -- 58@LB@ |
| 174 |
0.02116 |
0.4072 |
b3081 |
fadH |
-11.31 |
0.116093 |
186 -- 215 |
37 -- 63 |
2 4-dienoyl-CoA reductase NADH and FMN-linked |
|
_____________185______________________________216\n_____________|________________________________|\n5'-UGG...UUUAC______________UUUA_____UACCC____CUGUU...ACC-3'\n______________AUACUGGA__CAAU____UGAGC_____GUCG\n______________||||||||__||||____|||||_____||||\n______________UAUGACCU__GUUA____ACUCG_____CAGC\n3'-UUU...UUCAU________UC____C________UUA______ACGAA...GCG-5'\n_____________|________________________________|\n_____________64_______________________________36\n |
187 -- 193 |
56 -- 62 |
-21.1868 kcal/mol |
6.57497 kcal/mol |
3.30267 kcal/mol |
185 216@LB@ | |@LB@5'-UGG...UUUAC UUUA UACCC CUGUU...ACC-3'@LB@ AUACUGGA CAAU UGAGC GUCG@LB@ |||||||| |||| ||||| ||||@LB@ UAUGACCU GUUA ACUCG CAGC@LB@3'-UUU...UUCAU UC C UUA ACGAA...GCG-5'@LB@ | |@LB@ 64 36@LB@@LB@@LB@Energy -11.31 kcal/mol@LB@Hybridization Energy -21.1868 kcal/mol@LB@Unfolding Energy - mRNA 6.57497 kcal/mol@LB@Unfolding Energy - sRNA 3.30267 kcal/mol@LB@@LB@Position - mRNA 186 -- 215@LB@Position - sRNA 37 -- 63@LB@Position Seed - mRNA 187 -- 193@LB@Position Seed - sRNA 56 -- 62@LB@ |
| 180 |
0.02216 |
0.4113 |
b4123 |
dcuB |
-12.05 |
0.087474 |
186 -- 195 |
12 -- 21 |
C4-dicarboxylate transporter anaerobic; DcuS co-sensor |
|
_____________185________196\n_____________|__________|\n5'-UCU...AUUAU__________CACAC...UGG-3'\n______________CGCGAGGGUU\n______________|||||||||:\n______________GCGCUCCCAG\n3'-UUU...AAGAG__________AAGGA...GCG-5'\n_____________|__________|\n_____________22_________11\n |
189 -- 195 |
12 -- 18 |
-19.9032 kcal/mol |
3.47865 kcal/mol |
4.37028 kcal/mol |
185 196@LB@ | |@LB@5'-UCU...AUUAU CACAC...UGG-3'@LB@ CGCGAGGGUU@LB@ |||||||||:@LB@ GCGCUCCCAG@LB@3'-UUU...AAGAG AAGGA...GCG-5'@LB@ | |@LB@ 22 11@LB@@LB@@LB@Energy -12.05 kcal/mol@LB@Hybridization Energy -19.9032 kcal/mol@LB@Unfolding Energy - mRNA 3.47865 kcal/mol@LB@Unfolding Energy - sRNA 4.37028 kcal/mol@LB@@LB@Position - mRNA 186 -- 195@LB@Position - sRNA 12 -- 21@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 12 -- 18@LB@ |
| 80 |
0.007461 |
0.3134 |
b0925 |
ldtD |
-10.36 |
0.165445 |
187 -- 206 |
37 -- 61 |
murein L D-transpeptidase |
|
_____________186_______________________207\n_____________|_________________________|\n5'-AAG...UAAAA__A______________G_______CUUAA...CUG-3'\n______________AC_GGGGGCA_____AG_GAUGUUG\n______________||_||::|||_____||_:||||:|\n______________UG_CCUUCGU_____UC_UUACAGC\n3'-UUU...CAUUA__A_______UACAC__G_______ACGAA...GCG-5'\n_____________|_________________________|\n_____________62________________________36\n |
200 -- 206 |
37 -- 43 |
-19.2999 kcal/mol |
5.64293 kcal/mol |
3.30158 kcal/mol |
186 207@LB@ | |@LB@5'-AAG...UAAAA A G CUUAA...CUG-3'@LB@ AC GGGGGCA AG GAUGUUG@LB@ || ||::||| || :||||:|@LB@ UG CCUUCGU UC UUACAGC@LB@3'-UUU...CAUUA A UACAC G ACGAA...GCG-5'@LB@ | |@LB@ 62 36@LB@@LB@@LB@Energy -10.36 kcal/mol@LB@Hybridization Energy -19.2999 kcal/mol@LB@Unfolding Energy - mRNA 5.64293 kcal/mol@LB@Unfolding Energy - sRNA 3.30158 kcal/mol@LB@@LB@Position - mRNA 187 -- 206@LB@Position - sRNA 37 -- 61@LB@Position Seed - mRNA 200 -- 206@LB@Position Seed - sRNA 37 -- 43@LB@ |
| 4 |
0.0001495 |
0.1256 |
b3867 |
hemN |
-18.37 |
0.007265 |
188 -- 239 |
3 -- 58 |
coproporphyrinogen III oxidase SAM and NAD(P)H dependent oxygen-independent |
|
_____________187_________________________________________________________240\n_____________|___________________________________________________________|\n5'-CGG...CCAUC_____G___________________A_____CAAA____ACU___A___GGC_______CAGAA...CAG-3'\n______________GGAAG_A__GUGAGC_AUGUC_UGU___CAG_____UCG___GGG_UCU___CCUGAUC\n______________|||||_|__||||||_|||||_||:___|||_____:||___|||_|||___|||||||\n______________CCUUC_U__CACUCG_UACAG_ACG___GUC_____GGC___CCC_AGA___GGACUAG\n3'-UUU...UAUGA_____G_UA______U_____C___AAA___CAAGA___GCU_______A_________CG-5'\n_____________|___________________________________________________________|\n_____________59__________________________________________________________2\n |
233 -- 239 |
3 -- 9 |
-47.0013 kcal/mol |
14.5919 kcal/mol |
14.0436 kcal/mol |
187 240@LB@ | |@LB@5'-CGG...CCAUC G A CAAA ACU A GGC CAGAA...CAG-3'@LB@ GGAAG A GUGAGC AUGUC UGU CAG UCG GGG UCU CCUGAUC@LB@ ||||| | |||||| ||||| ||: ||| :|| ||| ||| |||||||@LB@ CCUUC U CACUCG UACAG ACG GUC GGC CCC AGA GGACUAG@LB@3'-UUU...UAUGA G UA U C AAA CAAGA GCU A CG-5'@LB@ | |@LB@ 59 2@LB@@LB@@LB@Energy -18.37 kcal/mol@LB@Hybridization Energy -47.0013 kcal/mol@LB@Unfolding Energy - mRNA 14.5919 kcal/mol@LB@Unfolding Energy - sRNA 14.0436 kcal/mol@LB@@LB@Position - mRNA 188 -- 239@LB@Position - sRNA 3 -- 58@LB@Position Seed - mRNA 233 -- 239@LB@Position Seed - sRNA 3 -- 9@LB@ |
| 57 |
0.005292 |
0.2905 |
b0077 |
ilvI |
-12.73 |
0.067491 |
188 -- 240 |
1 -- 67 |
acetolactate synthase 3 large subunit |
|
_____________187__________________________________________________________________241\n_____________|____________________________________________________________________|\n5'-AAA...CAAAC___________C____C_________________________AG_____A__U____G__________UUAUC...UUU-3'\n______________AGUGA____GG_AGGC_AUG_GAG__AUGUUGU_CU____GG____CCG_GA_GGUC_UCC_GAUCGC\n______________|||:|____||_|:||_|||_|||__||||:||_||____||____|||_||_||||_|||_||||||\n______________UCAUU____CC_UUCG_UAC_CUC__UACAGCA_GA____CC____GGC_CU_CCAG_AGG_CUAGCG\n3'-UUU...CCGAU_____AUGA_______U___A___GU_______C__AAGU__AAGA___G__C____A___A______-5'\n_____________|___________________________________________________________________|\n_____________68__________________________________________________________________1\n |
207 -- 213 |
36 -- 42 |
-47.8903 kcal/mol |
21.0378 kcal/mol |
14.1245 kcal/mol |
187 241@LB@ | |@LB@5'-AAA...CAAAC C C AG A U G UUAUC...UUU-3'@LB@ AGUGA GG AGGC AUG GAG AUGUUGU CU GG CCG GA GGUC UCC GAUCGC@LB@ |||:| || |:|| ||| ||| ||||:|| || || ||| || |||| ||| ||||||@LB@ UCAUU CC UUCG UAC CUC UACAGCA GA CC GGC CU CCAG AGG CUAGCG@LB@3'-UUU...CCGAU AUGA U A GU C AAGU AAGA G C A A -5'@LB@ | |@LB@ 68 1@LB@@LB@@LB@Energy -12.73 kcal/mol@LB@Hybridization Energy -47.8903 kcal/mol@LB@Unfolding Energy - mRNA 21.0378 kcal/mol@LB@Unfolding Energy - sRNA 14.1245 kcal/mol@LB@@LB@Position - mRNA 188 -- 240@LB@Position - sRNA 1 -- 67@LB@Position Seed - mRNA 207 -- 213@LB@Position Seed - sRNA 36 -- 42@LB@ |
| 62 |
0.005609 |
0.2905 |
b1132 |
hflD |
-11.66 |
0.101792 |
188 -- 207 |
42 -- 58 |
putative lysogenization regulator |
|
_____________187___________________208\n_____________|_____________________|\n5'-ACC...AACAA_________GAAC________AGAAU...CCG-3'\n______________GGAAGCAGU____GUG_GCAA\n______________|||||||:|____|||_||||\n______________CCUUCGUUA____CAC_CGUU\n3'-UUU...UAUGA________________U____ACAGC...GCG-5'\n_____________|_____________________|\n_____________59____________________41\n |
190 -- 196 |
50 -- 56 |
-19.7521 kcal/mol |
4.88534 kcal/mol |
3.2101 kcal/mol |
187 208@LB@ | |@LB@5'-ACC...AACAA GAAC AGAAU...CCG-3'@LB@ GGAAGCAGU GUG GCAA@LB@ |||||||:| ||| ||||@LB@ CCUUCGUUA CAC CGUU@LB@3'-UUU...UAUGA U ACAGC...GCG-5'@LB@ | |@LB@ 59 41@LB@@LB@@LB@Energy -11.66 kcal/mol@LB@Hybridization Energy -19.7521 kcal/mol@LB@Unfolding Energy - mRNA 4.88534 kcal/mol@LB@Unfolding Energy - sRNA 3.2101 kcal/mol@LB@@LB@Position - mRNA 188 -- 207@LB@Position - sRNA 42 -- 58@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 50 -- 56@LB@ |
