78 |
0.00737 |
0.3134 |
b2299 |
yfcD |
-10.35 |
0.165972 |
38 -- 78 |
49 -- 90 |
putative NUDIX hydrolase |
|
_____________37__________________________________________79\n_____________|___________________________________________|\n5'-AGA...AUUCC_____G____A_______GA____U_GC_______________ACGUA...AGU-3'\n______________GAAAG_CGGU_AUCCGGC__GUUA_G__AUGCUGGA__UAAUG\n______________:||||_|:|:_|:|||||__|:||_|__||:|||||__:||||\n______________UUUUC_GUCG_UGGGCCG__CGAU_C__UAUGACCU__GUUAC\n___________3'-_____G____________AC____U_AU________UC_____ACUCG...GCG-5'\n______________|__________________________________________|\n______________90_________________________________________48\n |
67 -- 73 |
56 -- 62 |
-41.1069 kcal/mol |
16.14 kcal/mol |
14.6203 kcal/mol |
37 79@LB@ | |@LB@5'-AGA...AUUCC G A GA U GC ACGUA...AGU-3'@LB@ GAAAG CGGU AUCCGGC GUUA G AUGCUGGA UAAUG@LB@ :|||| |:|: |:||||| |:|| | ||:||||| :||||@LB@ UUUUC GUCG UGGGCCG CGAU C UAUGACCU GUUAC@LB@ 3'- G AC U AU UC ACUCG...GCG-5'@LB@ | |@LB@ 90 48@LB@@LB@@LB@Energy -10.35 kcal/mol@LB@Hybridization Energy -41.1069 kcal/mol@LB@Unfolding Energy - mRNA 16.14 kcal/mol@LB@Unfolding Energy - sRNA 14.6203 kcal/mol@LB@@LB@Position - mRNA 38 -- 78@LB@Position - sRNA 49 -- 90@LB@Position Seed - mRNA 67 -- 73@LB@Position Seed - sRNA 56 -- 62@LB@ |
85 |
0.008408 |
0.3323 |
b1246 |
oppD |
-9.75 |
0.205761 |
38 -- 64 |
37 -- 61 |
oligopeptide ABC transporter ATPase |
|
_____________37__________________________65\n_____________|___________________________|\n5'-AGC...AAGCA_______U___U__C_________G__CGAAC...ACG-3'\n______________GCUGGGG_GCA_UG_UGAGUGAUG_CG\n______________:||||::_|||_||_||||::|||_||\n______________UGACCUU_CGU_AC_ACUCGUUAC_GC\n3'-UUU...CAUUA___________U____________A__ACGAA...GCG-5'\n_____________|___________________________|\n_____________62__________________________36\n |
55 -- 61 |
40 -- 46 |
-27.1525 kcal/mol |
14.0993 kcal/mol |
3.30158 kcal/mol |
37 65@LB@ | |@LB@5'-AGC...AAGCA U U C G CGAAC...ACG-3'@LB@ GCUGGGG GCA UG UGAGUGAUG CG@LB@ :||||:: ||| || ||||::||| ||@LB@ UGACCUU CGU AC ACUCGUUAC GC@LB@3'-UUU...CAUUA U A ACGAA...GCG-5'@LB@ | |@LB@ 62 36@LB@@LB@@LB@Energy -9.75 kcal/mol@LB@Hybridization Energy -27.1525 kcal/mol@LB@Unfolding Energy - mRNA 14.0993 kcal/mol@LB@Unfolding Energy - sRNA 3.30158 kcal/mol@LB@@LB@Position - mRNA 38 -- 64@LB@Position - sRNA 37 -- 61@LB@Position Seed - mRNA 55 -- 61@LB@Position Seed - sRNA 40 -- 46@LB@ |
88 |
0.008994 |
0.3393 |
b0721 |
sdhC |
-13.41 |
0.051766 |
40 -- 58 |
43 -- 60 |
succinate dehydrogenase membrane subunit binds cytochrome b556 |
|
_____________39__________________59\n_____________|___________________|\n5'-UCC...CGCAU_____________UUU___UGACG...CCG-3'\n______________CUGGAAGCAGUGU___GCA\n______________|||||||||:|||___|||\n______________GACCUUCGUUACA___CGU\n3'-UUU...AUUAU_____________CU____UACAG...GCG-5'\n_____________|___________________|\n_____________61__________________42\n |
46 -- 52 |
48 -- 54 |
-24.0509 kcal/mol |
7.34137 kcal/mol |
3.29917 kcal/mol |
39 59@LB@ | |@LB@5'-UCC...CGCAU UUU UGACG...CCG-3'@LB@ CUGGAAGCAGUGU GCA@LB@ |||||||||:||| |||@LB@ GACCUUCGUUACA CGU@LB@3'-UUU...AUUAU CU UACAG...GCG-5'@LB@ | |@LB@ 61 42@LB@@LB@@LB@Energy -13.41 kcal/mol@LB@Hybridization Energy -24.0509 kcal/mol@LB@Unfolding Energy - mRNA 7.34137 kcal/mol@LB@Unfolding Energy - sRNA 3.29917 kcal/mol@LB@@LB@Position - mRNA 40 -- 58@LB@Position - sRNA 43 -- 60@LB@Position Seed - mRNA 46 -- 52@LB@Position Seed - sRNA 48 -- 54@LB@ |
83 |
0.008249 |
0.3318 |
b0183 |
rnhB |
-13.04 |
0.059790 |
42 -- 55 |
44 -- 58 |
ribonuclease HII degrades RNA of DNA-RNA hybrids |
|
_____________41______________56\n_____________|_______________|\n5'-AAU...UUGCA_______________CGCAA...UCC-3'\n______________GGAAG_AGUGUGAGC\n______________|||||_|:|||||||\n______________CCUUC_UUACACUCG\n3'-UUU...UAUGA_____G_________UUACA...GCG-5'\n_____________|_______________|\n_____________59______________43\n |
49 -- 55 |
44 -- 50 |
-21.6429 kcal/mol |
5.39444 kcal/mol |
3.20799 kcal/mol |
41 56@LB@ | |@LB@5'-AAU...UUGCA CGCAA...UCC-3'@LB@ GGAAG AGUGUGAGC@LB@ ||||| |:|||||||@LB@ CCUUC UUACACUCG@LB@3'-UUU...UAUGA G UUACA...GCG-5'@LB@ | |@LB@ 59 43@LB@@LB@@LB@Energy -13.04 kcal/mol@LB@Hybridization Energy -21.6429 kcal/mol@LB@Unfolding Energy - mRNA 5.39444 kcal/mol@LB@Unfolding Energy - sRNA 3.20799 kcal/mol@LB@@LB@Position - mRNA 42 -- 55@LB@Position - sRNA 44 -- 58@LB@Position Seed - mRNA 49 -- 55@LB@Position Seed - sRNA 44 -- 50@LB@ |
91 |
0.009487 |
0.3393 |
b4148 |
sugE |
-13.59 |
0.048204 |
42 -- 77 |
12 -- 46 |
multidrug efflux system protein |
|
_____________41___________________________________78\n_____________|____________________________________|\n5'-CGC...ACGAC___U_________CG__UGUU__________UA___ACAAA...UUA-3'\n______________AGC_GUGUCGUGC__UU____UUUUCUGCGA__GUC\n______________|||_:||||||||__|:____||:||:||||__|||\n______________UCG_UACAGCACG__AG____AAGAGGCGCU__CAG\n3'-UUU...UACAC___U_________AA__UCC___________CC___AAGGA...GCG-5'\n_____________|____________________________________|\n_____________47___________________________________11\n |
66 -- 72 |
17 -- 23 |
-35.5696 kcal/mol |
9.46718 kcal/mol |
12.5096 kcal/mol |
41 78@LB@ | |@LB@5'-CGC...ACGAC U CG UGUU UA ACAAA...UUA-3'@LB@ AGC GUGUCGUGC UU UUUUCUGCGA GUC@LB@ ||| :|||||||| |: ||:||:|||| |||@LB@ UCG UACAGCACG AG AAGAGGCGCU CAG@LB@3'-UUU...UACAC U AA UCC CC AAGGA...GCG-5'@LB@ | |@LB@ 47 11@LB@@LB@@LB@Energy -13.59 kcal/mol@LB@Hybridization Energy -35.5696 kcal/mol@LB@Unfolding Energy - mRNA 9.46718 kcal/mol@LB@Unfolding Energy - sRNA 12.5096 kcal/mol@LB@@LB@Position - mRNA 42 -- 77@LB@Position - sRNA 12 -- 46@LB@Position Seed - mRNA 66 -- 72@LB@Position Seed - sRNA 17 -- 23@LB@ |
131 |
0.01424 |
0.3651 |
b0058 |
rluA |
-14.42 |
0.034831 |
43 -- 63 |
40 -- 60 |
dual specificity 23S rRNA pseudouridine(746) tRNA pseudouridine(32) synthase SAM-dependent |
|
_____________42____________________64\n_____________|_____________________|\n5'-CGU...CUCGU________UC__C_U______AACCC...UGU-3'\n______________CUGGAAGC__UG_G_GCAGUG\n______________||||||||__||_|_|||:||\n______________GACCUUCG__AC_C_CGUUAC\n3'-UUU...AUUAU________UU__A_U______AGCAC...GCG-5'\n_____________|_____________________|\n_____________61____________________39\n |
44 -- 50 |
53 -- 59 |
-25.1761 kcal/mol |
7.45543 kcal/mol |
3.29985 kcal/mol |
42 64@LB@ | |@LB@5'-CGU...CUCGU UC C U AACCC...UGU-3'@LB@ CUGGAAGC UG G GCAGUG@LB@ |||||||| || | |||:||@LB@ GACCUUCG AC C CGUUAC@LB@3'-UUU...AUUAU UU A U AGCAC...GCG-5'@LB@ | |@LB@ 61 39@LB@@LB@@LB@Energy -14.42 kcal/mol@LB@Hybridization Energy -25.1761 kcal/mol@LB@Unfolding Energy - mRNA 7.45543 kcal/mol@LB@Unfolding Energy - sRNA 3.29985 kcal/mol@LB@@LB@Position - mRNA 43 -- 63@LB@Position - sRNA 40 -- 60@LB@Position Seed - mRNA 44 -- 50@LB@Position Seed - sRNA 53 -- 59@LB@ |
23 |
0.001852 |
0.2682 |
b4059 |
ssb |
-13.81 |
0.044308 |
47 -- 78 |
34 -- 64 |
single-stranded DNA-binding protein |
|
_____________46_______________________________79\n_____________|________________________________|\n5'-AUC...UAUAC__________U___UUACCC_G__________AACAA...UUA-3'\n______________AGUAUUGGAA_GCA______G_AGUGUUGUGU\n______________|:||:|||||_|||______|_|:|||:|||:\n______________UUAUGACCUU_CGU______C_UUACAGCACG\n3'-UUU...AUUCA______________UACACU_G__________AAAGU...GCG-5'\n_____________|________________________________|\n_____________65_______________________________33\n |
72 -- 78 |
34 -- 40 |
-28.8532 kcal/mol |
8.27543 kcal/mol |
6.76952 kcal/mol |
46 79@LB@ | |@LB@5'-AUC...UAUAC U UUACCC G AACAA...UUA-3'@LB@ AGUAUUGGAA GCA G AGUGUUGUGU@LB@ |:||:||||| ||| | |:|||:|||:@LB@ UUAUGACCUU CGU C UUACAGCACG@LB@3'-UUU...AUUCA UACACU G AAAGU...GCG-5'@LB@ | |@LB@ 65 33@LB@@LB@@LB@Energy -13.81 kcal/mol@LB@Hybridization Energy -28.8532 kcal/mol@LB@Unfolding Energy - mRNA 8.27543 kcal/mol@LB@Unfolding Energy - sRNA 6.76952 kcal/mol@LB@@LB@Position - mRNA 47 -- 78@LB@Position - sRNA 34 -- 64@LB@Position Seed - mRNA 72 -- 78@LB@Position Seed - sRNA 34 -- 40@LB@ |
24 |
0.001915 |
0.2682 |
b0893 |
serS |
-16.11 |
0.017871 |
52 -- 73 |
67 -- 90 |
seryl-tRNA synthetase |
|
_____________51_______________________74\n_____________|________________________|\n5'-AAA...UGGCG________________________ACAGG...UUG-3'\n______________AAAAGCU__CGCCUGGCUGGCUGA\n______________||||||:__|:||:||||||||:|\n______________UUUUCGG__GUGGGCCGACCGAUU\n___________3'-_______UC_______________CAUUA...GCG-5'\n______________|_______________________|\n______________90______________________66\n |
67 -- 73 |
67 -- 73 |
-35.7282 kcal/mol |
7.88567 kcal/mol |
11.7355 kcal/mol |
51 74@LB@ | |@LB@5'-AAA...UGGCG ACAGG...UUG-3'@LB@ AAAAGCU CGCCUGGCUGGCUGA@LB@ ||||||: |:||:||||||||:|@LB@ UUUUCGG GUGGGCCGACCGAUU@LB@ 3'- UC CAUUA...GCG-5'@LB@ | |@LB@ 90 66@LB@@LB@@LB@Energy -16.11 kcal/mol@LB@Hybridization Energy -35.7282 kcal/mol@LB@Unfolding Energy - mRNA 7.88567 kcal/mol@LB@Unfolding Energy - sRNA 11.7355 kcal/mol@LB@@LB@Position - mRNA 52 -- 73@LB@Position - sRNA 67 -- 90@LB@Position Seed - mRNA 67 -- 73@LB@Position Seed - sRNA 67 -- 73@LB@ |
175 |
0.02121 |
0.4072 |
b4592 |
cbdX |
-9.01 |
0.266875 |
56 -- 82 |
33 -- 61 |
putative cytochrome bd-II oxidase subunit |
|
_____________55______________________________83\n_____________|_______________________________|\n5'-GCG...CUGAC__________UU____U______________GAUAU...CGU-3'\n______________GCUG__AGCA__AUGU_GGUAA__UCGUGCU\n______________:|||__||||__||||_:|:||__|||||||\n______________UGAC__UCGU__UACA_UCGUU__AGCACGA\n3'-UUU...CAUUA____CU__________C_____AC_______AAGUC...GCG-5'\n_____________|_______________________________|\n_____________62______________________________32\n |
76 -- 82 |
33 -- 39 |
-24.6928 kcal/mol |
8.91736 kcal/mol |
6.76812 kcal/mol |
55 83@LB@ | |@LB@5'-GCG...CUGAC UU U GAUAU...CGU-3'@LB@ GCUG AGCA AUGU GGUAA UCGUGCU@LB@ :||| |||| |||| :|:|| |||||||@LB@ UGAC UCGU UACA UCGUU AGCACGA@LB@3'-UUU...CAUUA CU C AC AAGUC...GCG-5'@LB@ | |@LB@ 62 32@LB@@LB@@LB@Energy -9.01 kcal/mol@LB@Hybridization Energy -24.6928 kcal/mol@LB@Unfolding Energy - mRNA 8.91736 kcal/mol@LB@Unfolding Energy - sRNA 6.76812 kcal/mol@LB@@LB@Position - mRNA 56 -- 82@LB@Position - sRNA 33 -- 61@LB@Position Seed - mRNA 76 -- 82@LB@Position Seed - sRNA 33 -- 39@LB@ |
92 |
0.009626 |
0.3393 |
b3811 |
xerC |
-15.13 |
0.026359 |
57 -- 92 |
33 -- 64 |
site-specific tyrosine recombinase |
|
_____________56___________________________________93\n_____________|____________________________________|\n5'-CCA...AUGUC______G__________C___UUUG___________GUUUA...UUG-3'\n______________GAUGCU_GGAAGCGAUG_UGA____GGUGUCGUGCU\n______________:||:||_||||||:|||_|||____::|||||||||\n______________UUAUGA_CCUUCGUUAC_ACU____UUACAGCACGA\n3'-UUU...AUUCA_____________________CG_____________AAGUC...GCG-5'\n_____________|____________________________________|\n_____________65___________________________________32\n |
83 -- 89 |
36 -- 42 |
-41.1335 kcal/mol |
19.2369 kcal/mol |
6.76965 kcal/mol |
56 93@LB@ | |@LB@5'-CCA...AUGUC G C UUUG GUUUA...UUG-3'@LB@ GAUGCU GGAAGCGAUG UGA GGUGUCGUGCU@LB@ :||:|| ||||||:||| ||| ::|||||||||@LB@ UUAUGA CCUUCGUUAC ACU UUACAGCACGA@LB@3'-UUU...AUUCA CG AAGUC...GCG-5'@LB@ | |@LB@ 65 32@LB@@LB@@LB@Energy -15.13 kcal/mol@LB@Hybridization Energy -41.1335 kcal/mol@LB@Unfolding Energy - mRNA 19.2369 kcal/mol@LB@Unfolding Energy - sRNA 6.76965 kcal/mol@LB@@LB@Position - mRNA 57 -- 92@LB@Position - sRNA 33 -- 64@LB@Position Seed - mRNA 83 -- 89@LB@Position Seed - sRNA 36 -- 42@LB@ |