| 188 |
0.02302 |
0.4113 |
b3105 |
yhaJ |
-12.66 |
0.069284 |
224 -- 245 |
40 -- 61 |
LysR family putative transcriptional regulator |
|
_____________223____________________246\n_____________|______________________|\n5'-CGG...UUAAC__________CUAC____U___GAUGC...GCG-3'\n______________GCUGGAAGCA____GGGU_AUG\n______________:|||||||||____|:|:_|||\n______________UGACCUUCGU____CUCG_UAC\n3'-UUU...CAUUA__________UACA____U___AGCAC...GCG-5'\n_____________|______________________|\n_____________62_____________________39\n |
227 -- 233 |
52 -- 58 |
-21.8067 kcal/mol |
5.84576 kcal/mol |
3.30075 kcal/mol |
223 246@LB@ | |@LB@5'-CGG...UUAAC CUAC U GAUGC...GCG-3'@LB@ GCUGGAAGCA GGGU AUG@LB@ :||||||||| |:|: |||@LB@ UGACCUUCGU CUCG UAC@LB@3'-UUU...CAUUA UACA U AGCAC...GCG-5'@LB@ | |@LB@ 62 39@LB@@LB@@LB@Energy -12.66 kcal/mol@LB@Hybridization Energy -21.8067 kcal/mol@LB@Unfolding Energy - mRNA 5.84576 kcal/mol@LB@Unfolding Energy - sRNA 3.30075 kcal/mol@LB@@LB@Position - mRNA 224 -- 245@LB@Position - sRNA 40 -- 61@LB@Position Seed - mRNA 227 -- 233@LB@Position Seed - sRNA 52 -- 58@LB@ |
| 12 |
0.0007887 |
0.2153 |
b3981 |
secE |
-14.50 |
0.033700 |
225 -- 262 |
36 -- 90 |
preprotein translocase membrane subunit |
|
_____________224_____________________________________________________263\n_____________|_______________________________________________________|\n5'-UAA...CUCAA______G___________________________________A____________UGUGG...ACU-3'\n______________GGAAGC_GGCGC__GGC_____________CUGGAAGCGAUG__AGUGG_GUCGU\n______________::||||_:||:|__|||_____________||||||||:|||__||:::_|||||\n______________UUUUCG_UCGUG__CCG_____________GACCUUCGUUAC__UCGUU_CAGCA\n___________3'-______G_____GG___ACCGAUUCAUUAU____________AC_____A_____CGAAA...GCG-5'\n______________|______________________________________________________|\n______________90_____________________________________________________35\n |
245 -- 251 |
49 -- 55 |
-44.4001 kcal/mol |
14.9847 kcal/mol |
14.9108 kcal/mol |
224 263@LB@ | |@LB@5'-UAA...CUCAA G A UGUGG...ACU-3'@LB@ GGAAGC GGCGC GGC CUGGAAGCGAUG AGUGG GUCGU@LB@ ::|||| :||:| ||| ||||||||:||| ||::: |||||@LB@ UUUUCG UCGUG CCG GACCUUCGUUAC UCGUU CAGCA@LB@ 3'- G GG ACCGAUUCAUUAU AC A CGAAA...GCG-5'@LB@ | |@LB@ 90 35@LB@@LB@@LB@Energy -14.50 kcal/mol@LB@Hybridization Energy -44.4001 kcal/mol@LB@Unfolding Energy - mRNA 14.9847 kcal/mol@LB@Unfolding Energy - sRNA 14.9108 kcal/mol@LB@@LB@Position - mRNA 225 -- 262@LB@Position - sRNA 36 -- 90@LB@Position Seed - mRNA 245 -- 251@LB@Position Seed - sRNA 49 -- 55@LB@ |
| 36 |
0.00312 |
0.2776 |
b1418 |
cybB |
-18.82 |
0.006053 |
229 -- 299 |
21 -- 85 |
cytochrome b561 |
|
_____________228__________________________________________________________________________300\n_____________|____________________________________________________________________________|\n5'-AAC...ACAAA_______UCA_________CUUUU________UUAUC____C__AUU_C______GA_________U__U______C-3'\n______________UCAGCAU___CUGGCUGGU_______UACUGG_____GCAG_GU___G_GCAAUG__GU___UUCG_GG_UUCUUC\n______________:|||||:___|:||||||:_______||||||_____|||:_||___|_||||||__||___|||:_||_||||:|\n______________GGUCGUG___GGCCGACCG_______AUGACC_____CGUU_CA___C_CGUUAC__CA___AAGU_CC_AAGAGG\n______3'-UUUUC___________________AUUCAUU______UU_______A______U______AG__CGA______________CGCUC...GCG-5'\n_____________|____________________________________________________________________________|\n_____________86___________________________________________________________________________20\n |
241 -- 247 |
70 -- 76 |
-54.3818 kcal/mol |
15.9593 kcal/mol |
19.6 kcal/mol |
228 300@LB@ | |@LB@5'-AAC...ACAAA UCA CUUUU UUAUC C AUU C GA U U C-3'@LB@ UCAGCAU CUGGCUGGU UACUGG GCAG GU G GCAAUG GU UUCG GG UUCUUC@LB@ :|||||: |:||||||: |||||| |||: || | |||||| || |||: || ||||:|@LB@ GGUCGUG GGCCGACCG AUGACC CGUU CA C CGUUAC CA AAGU CC AAGAGG@LB@ 3'-UUUUC AUUCAUU UU A U AG CGA CGCUC...GCG-5'@LB@ | |@LB@ 86 20@LB@@LB@@LB@Energy -18.82 kcal/mol@LB@Hybridization Energy -54.3818 kcal/mol@LB@Unfolding Energy - mRNA 15.9593 kcal/mol@LB@Unfolding Energy - sRNA 19.6 kcal/mol@LB@@LB@Position - mRNA 229 -- 299@LB@Position - sRNA 21 -- 85@LB@Position Seed - mRNA 241 -- 247@LB@Position Seed - sRNA 70 -- 76@LB@ |
| 34 |
0.003032 |
0.2776 |
b3928 |
zapB |
-12.77 |
0.066459 |
230 -- 240 |
51 -- 61 |
FtsZ stabilizer septal ring assembly factor cell division stimulator |
|
_____________229_________241\n_____________|___________|\n5'-UUU...GAGAA___________AAGUA...AAG-3'\n______________ACUGGAAGCAA\n______________|||||||||||\n______________UGACCUUCGUU\n3'-UUU...CAUUA___________ACACU...GCG-5'\n_____________|___________|\n_____________62__________50\n |
234 -- 240 |
51 -- 57 |
-17.959 kcal/mol |
2.30162 kcal/mol |
2.8896 kcal/mol |
229 241@LB@ | |@LB@5'-UUU...GAGAA AAGUA...AAG-3'@LB@ ACUGGAAGCAA@LB@ |||||||||||@LB@ UGACCUUCGUU@LB@3'-UUU...CAUUA ACACU...GCG-5'@LB@ | |@LB@ 62 50@LB@@LB@@LB@Energy -12.77 kcal/mol@LB@Hybridization Energy -17.959 kcal/mol@LB@Unfolding Energy - mRNA 2.30162 kcal/mol@LB@Unfolding Energy - sRNA 2.8896 kcal/mol@LB@@LB@Position - mRNA 230 -- 240@LB@Position - sRNA 51 -- 61@LB@Position Seed - mRNA 234 -- 240@LB@Position Seed - sRNA 51 -- 57@LB@ |
| 116 |
0.01242 |
0.3585 |
b0468 |
ybaN |
-14.97 |
0.028033 |
230 -- 260 |
44 -- 78 |
DUF454 family inner membrane protein |
|
_____________229___________________________________261\n_____________|_____________________________________|\n5'-GUC...AUUGG_______________________UAC___________GUGGU...UGC-3'\n______________CUGGCUGGC__GGUAGUGCUGGG___GC____UGGGC\n______________|:|||||||__:|||:|:||||:___||____||:||\n______________GGCCGACCG__UCAUUAUGACCU___CG____ACUCG\n3'-UUU...UCGUG_________AU____________U____UUAC_____UUACA...GCG-5'\n_____________|_____________________________________|\n_____________79____________________________________43\n |
244 -- 250 |
56 -- 62 |
-40.2392 kcal/mol |
12.5705 kcal/mol |
12.6976 kcal/mol |
229 261@LB@ | |@LB@5'-GUC...AUUGG UAC GUGGU...UGC-3'@LB@ CUGGCUGGC GGUAGUGCUGGG GC UGGGC@LB@ |:||||||| :|||:|:||||: || ||:||@LB@ GGCCGACCG UCAUUAUGACCU CG ACUCG@LB@3'-UUU...UCGUG AU U UUAC UUACA...GCG-5'@LB@ | |@LB@ 79 43@LB@@LB@@LB@Energy -14.97 kcal/mol@LB@Hybridization Energy -40.2392 kcal/mol@LB@Unfolding Energy - mRNA 12.5705 kcal/mol@LB@Unfolding Energy - sRNA 12.6976 kcal/mol@LB@@LB@Position - mRNA 230 -- 260@LB@Position - sRNA 44 -- 78@LB@Position Seed - mRNA 244 -- 250@LB@Position Seed - sRNA 56 -- 62@LB@ |
| 43 |
0.003552 |
0.2776 |
b3453 |
ugpB |
-15.55 |
0.022327 |
231 -- 272 |
40 -- 85 |
sn-glycerol-3-phosphate ABC transporter periplasmic binding protein |
|
_____________230______________________________________________273\n_____________|________________________________________________|\n5'-UUC...CAGCA___________A_____GU_______G_____U___CA__________ACGAC...UGG-3'\n______________CUGGCGCUCGG_CUGGC____UAAUG__GGAA_GCA_____GGCAGUG\n______________|::||:|:|||_|||||____||||:__||||_|||_____:|||:||\n______________GGUCGUGGGCC_GACCG____AUUAU__CCUU_CGU_____UCGUUAC\n______3'-UUUUC_________________AUUC_____GA________UACAC_______AGCAC...GCG-5'\n_____________|________________________________________________|\n_____________86_______________________________________________39\n |
266 -- 272 |
40 -- 46 |
-44.9281 kcal/mol |
14.4718 kcal/mol |
14.9103 kcal/mol |
230 273@LB@ | |@LB@5'-UUC...CAGCA A GU G U CA ACGAC...UGG-3'@LB@ CUGGCGCUCGG CUGGC UAAUG GGAA GCA GGCAGUG@LB@ |::||:|:||| ||||| ||||: |||| ||| :|||:||@LB@ GGUCGUGGGCC GACCG AUUAU CCUU CGU UCGUUAC@LB@ 3'-UUUUC AUUC GA UACAC AGCAC...GCG-5'@LB@ | |@LB@ 86 39@LB@@LB@@LB@Energy -15.55 kcal/mol@LB@Hybridization Energy -44.9281 kcal/mol@LB@Unfolding Energy - mRNA 14.4718 kcal/mol@LB@Unfolding Energy - sRNA 14.9103 kcal/mol@LB@@LB@Position - mRNA 231 -- 272@LB@Position - sRNA 40 -- 85@LB@Position Seed - mRNA 266 -- 272@LB@Position Seed - sRNA 40 -- 46@LB@ |
| 150 |
0.01825 |
0.4072 |
b3255 |
accB |
-12.43 |
0.075652 |
231 -- 278 |
1 -- 47 |
acetyl CoA carboxylase BCCP subunit |
|
_____________230_______________________________________________279\n_____________|_________________________________________________|\n5'-UUU...UGAUC____UG_____AAGAA_____CA______AACU__AAA_______AG__GAAGA...GCC-3'\n______________GAGC___GUUG_____UCAGG__UCUCCG____GG___UUUCUGA__GC\n______________||||___||:|_____|||||__||||||____||___||:||||__||\n______________CUCG___CAGC_____AGUCC__AGAGGC____CC___AAGGACU__CG\n3'-UUU...UUACA____UUA____ACGAA_____A_______GCU___CAG_______AG__-5'\n_____________|________________________________________________|\n_____________48_______________________________________________1\n |
268 -- 274 |
5 -- 11 |
-38.2829 kcal/mol |
12.4901 kcal/mol |
13.3604 kcal/mol |
230 279@LB@ | |@LB@5'-UUU...UGAUC UG AAGAA CA AACU AAA AG GAAGA...GCC-3'@LB@ GAGC GUUG UCAGG UCUCCG GG UUUCUGA GC@LB@ |||| ||:| ||||| |||||| || ||:|||| ||@LB@ CUCG CAGC AGUCC AGAGGC CC AAGGACU CG@LB@3'-UUU...UUACA UUA ACGAA A GCU CAG AG -5'@LB@ | |@LB@ 48 1@LB@@LB@@LB@Energy -12.43 kcal/mol@LB@Hybridization Energy -38.2829 kcal/mol@LB@Unfolding Energy - mRNA 12.4901 kcal/mol@LB@Unfolding Energy - sRNA 13.3604 kcal/mol@LB@@LB@Position - mRNA 231 -- 278@LB@Position - sRNA 1 -- 47@LB@Position Seed - mRNA 268 -- 274@LB@Position Seed - sRNA 5 -- 11@LB@ |
| 163 |
0.02026 |
0.4072 |
b1283 |
osmB |
-10.88 |
0.136535 |
231 -- 259 |
38 -- 61 |
osmotically and stress inducible lipoprotein |
|
_____________230___________________________260\n_____________|_____________________________|\n5'-UAA...CCGCG____UUCU______UACUUU_________UCUGA...ACA-3'\n______________GCUG____GGCAAU______GGCAAUGUC\n______________:|||____:|||||______:||||||||\n______________UGAC____UCGUUA______UCGUUACAG\n3'-UUU...CAUUA____CU________CAC____________CACGA...GCG-5'\n_____________|_____________________________|\n_____________62____________________________37\n |
253 -- 259 |
38 -- 44 |
-21.4164 kcal/mol |
7.23917 kcal/mol |
3.30134 kcal/mol |
230 260@LB@ | |@LB@5'-UAA...CCGCG UUCU UACUUU UCUGA...ACA-3'@LB@ GCUG GGCAAU GGCAAUGUC@LB@ :||| :||||| :||||||||@LB@ UGAC UCGUUA UCGUUACAG@LB@3'-UUU...CAUUA CU CAC CACGA...GCG-5'@LB@ | |@LB@ 62 37@LB@@LB@@LB@Energy -10.88 kcal/mol@LB@Hybridization Energy -21.4164 kcal/mol@LB@Unfolding Energy - mRNA 7.23917 kcal/mol@LB@Unfolding Energy - sRNA 3.30134 kcal/mol@LB@@LB@Position - mRNA 231 -- 259@LB@Position - sRNA 38 -- 61@LB@Position Seed - mRNA 253 -- 259@LB@Position Seed - sRNA 38 -- 44@LB@ |
| 79 |
0.007454 |
0.3134 |
b1912 |
pgsA |
-16.66 |
0.014365 |
232 -- 294 |
1 -- 48 |
phosphatidylglycerophosphate synthetase |
|
_____________231_____________________________________________________________295\n_____________|_______________________________________________________________|\n5'-GUC...UACAC__UU_C_____AUC___A__CCA________AUU______UUAUCUGCCUGUCA_________CGUUUG-3'\n______________UG__C_GUGUC___CUU_UC___UUCUUUGU___GGUCUU______________CCUGGUCGC\n______________||__|_:||||___|||_||___||||::|:___||||||______________||||:||||\n______________AC__G_UACAG___GAA_AG___AAGAGGCG___CCAGAA______________GGACUAGCG\n3'-UUU...GUUAC__UC_U_____CAC______UCC________CUC_____________________________-5'\n_____________|______________________________________________________________|\n_____________49_____________________________________________________________1\n |
288 -- 294 |
1 -- 7 |
-35.4585 kcal/mol |
5.43289 kcal/mol |
13.3693 kcal/mol |
231 295@LB@ | |@LB@5'-GUC...UACAC UU C AUC A CCA AUU UUAUCUGCCUGUCA CGUUUG-3'@LB@ UG C GUGUC CUU UC UUCUUUGU GGUCUU CCUGGUCGC@LB@ || | :|||| ||| || ||||::|: |||||| ||||:||||@LB@ AC G UACAG GAA AG AAGAGGCG CCAGAA GGACUAGCG@LB@3'-UUU...GUUAC UC U CAC UCC CUC -5'@LB@ | |@LB@ 49 1@LB@@LB@@LB@Energy -16.66 kcal/mol@LB@Hybridization Energy -35.4585 kcal/mol@LB@Unfolding Energy - mRNA 5.43289 kcal/mol@LB@Unfolding Energy - sRNA 13.3693 kcal/mol@LB@@LB@Position - mRNA 232 -- 294@LB@Position - sRNA 1 -- 48@LB@Position Seed - mRNA 288 -- 294@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 146 |
0.01749 |
0.3998 |
b1611 |
fumC |
-5.84 |
0.669018 |
232 -- 244 |
46 -- 59 |
fumarate hydratase (fumarase C) aerobic Class II |
|
_____________231____________245\n_____________|______________|\n5'-AGG...UUCGA______________UGUCC...UCC-3'\n______________UGGGGGCGAU_UGA\n______________|||::||:||_|||\n______________ACCUUCGUUA_ACU\n3'-UUU...UUAUG__________C___CGUUA...GCG-5'\n_____________|______________|\n_____________60_____________45\n |
233 -- 239 |
52 -- 58 |
-14.3864 kcal/mol |
5.35896 kcal/mol |
3.18972 kcal/mol |
231 245@LB@ | |@LB@5'-AGG...UUCGA UGUCC...UCC-3'@LB@ UGGGGGCGAU UGA@LB@ |||::||:|| |||@LB@ ACCUUCGUUA ACU@LB@3'-UUU...UUAUG C CGUUA...GCG-5'@LB@ | |@LB@ 60 45@LB@@LB@@LB@Energy -5.84 kcal/mol@LB@Hybridization Energy -14.3864 kcal/mol@LB@Unfolding Energy - mRNA 5.35896 kcal/mol@LB@Unfolding Energy - sRNA 3.18972 kcal/mol@LB@@LB@Position - mRNA 232 -- 244@LB@Position - sRNA 46 -- 59@LB@Position Seed - mRNA 233 -- 239@LB@Position Seed - sRNA 52 -- 58@LB@ |
