| 152 |
0.0188 |
0.4072 |
b0950 |
pqiA |
-8.64 |
0.302533 |
34 -- 75 |
1 -- 61 |
paraquat-inducible SoxRS-regulated inner membrane protein |
|
_____________33_____________________________________________________________76\n_____________|______________________________________________________________|\n5'-CUG...UGAAC__________UCU__A______________________AAAAAAU_____GG__________AAAAU...GUC-3'\n______________GCUGGGAGUA___UG_AGC________________GUU_________GGU____CUGAUCGC\n______________:||||:||:|___||_|||________________|||_________|||____||||||||\n______________UGACCUUCGU___AC_UCG________________CAA_________CCA____GACUAGCG\n3'-UUU...CAUUA__________UAC______UUACAGCACGAAAGUC___GAGGCGCUC___GAAG________-5'\n_____________|_____________________________________________________________|\n_____________62____________________________________________________________1\n |
69 -- 75 |
1 -- 7 |
-32.0531 kcal/mol |
9.29686 kcal/mol |
14.1206 kcal/mol |
33 76@LB@ | |@LB@5'-CUG...UGAAC UCU A AAAAAAU GG AAAAU...GUC-3'@LB@ GCUGGGAGUA UG AGC GUU GGU CUGAUCGC@LB@ :||||:||:| || ||| ||| ||| ||||||||@LB@ UGACCUUCGU AC UCG CAA CCA GACUAGCG@LB@3'-UUU...CAUUA UAC UUACAGCACGAAAGUC GAGGCGCUC GAAG -5'@LB@ | |@LB@ 62 1@LB@@LB@@LB@Energy -8.64 kcal/mol@LB@Hybridization Energy -32.0531 kcal/mol@LB@Unfolding Energy - mRNA 9.29686 kcal/mol@LB@Unfolding Energy - sRNA 14.1206 kcal/mol@LB@@LB@Position - mRNA 34 -- 75@LB@Position - sRNA 1 -- 61@LB@Position Seed - mRNA 69 -- 75@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 71 |
0.00621 |
0.2939 |
b0178 |
skp |
-11.69 |
0.100677 |
99 -- 118 |
40 -- 66 |
periplasmic chaperone |
|
_____________98__________________________119\n_____________|___________________________|\n5'-CUC...GGAAU___________________________ACUUU...UCC-3'\n______________GUAGU______GGUAGUGU_AGCGAUG\n______________|||:|______:|:|:|||_|||:|||\n______________CAUUA______UCGUUACA_UCGUUAC\n3'-UUU...CGAUU_____UGACCU________C_______AGCAC...GCG-5'\n_____________|___________________________|\n_____________67__________________________39\n |
112 -- 118 |
40 -- 46 |
-18.9809 kcal/mol |
3.99027 kcal/mol |
3.30497 kcal/mol |
98 119@LB@ | |@LB@5'-CUC...GGAAU ACUUU...UCC-3'@LB@ GUAGU GGUAGUGU AGCGAUG@LB@ |||:| :|:|:||| |||:|||@LB@ CAUUA UCGUUACA UCGUUAC@LB@3'-UUU...CGAUU UGACCU C AGCAC...GCG-5'@LB@ | |@LB@ 67 39@LB@@LB@@LB@Energy -11.69 kcal/mol@LB@Hybridization Energy -18.9809 kcal/mol@LB@Unfolding Energy - mRNA 3.99027 kcal/mol@LB@Unfolding Energy - sRNA 3.30497 kcal/mol@LB@@LB@Position - mRNA 99 -- 118@LB@Position - sRNA 40 -- 66@LB@Position Seed - mRNA 112 -- 118@LB@Position Seed - sRNA 40 -- 46@LB@ |
| 79 |
0.007454 |
0.3134 |
b1912 |
pgsA |
-16.66 |
0.014365 |
232 -- 294 |
1 -- 48 |
phosphatidylglycerophosphate synthetase |
|
_____________231_____________________________________________________________295\n_____________|_______________________________________________________________|\n5'-GUC...UACAC__UU_C_____AUC___A__CCA________AUU______UUAUCUGCCUGUCA_________CGUUUG-3'\n______________UG__C_GUGUC___CUU_UC___UUCUUUGU___GGUCUU______________CCUGGUCGC\n______________||__|_:||||___|||_||___||||::|:___||||||______________||||:||||\n______________AC__G_UACAG___GAA_AG___AAGAGGCG___CCAGAA______________GGACUAGCG\n3'-UUU...GUUAC__UC_U_____CAC______UCC________CUC_____________________________-5'\n_____________|______________________________________________________________|\n_____________49_____________________________________________________________1\n |
288 -- 294 |
1 -- 7 |
-35.4585 kcal/mol |
5.43289 kcal/mol |
13.3693 kcal/mol |
231 295@LB@ | |@LB@5'-GUC...UACAC UU C AUC A CCA AUU UUAUCUGCCUGUCA CGUUUG-3'@LB@ UG C GUGUC CUU UC UUCUUUGU GGUCUU CCUGGUCGC@LB@ || | :|||| ||| || ||||::|: |||||| ||||:||||@LB@ AC G UACAG GAA AG AAGAGGCG CCAGAA GGACUAGCG@LB@3'-UUU...GUUAC UC U CAC UCC CUC -5'@LB@ | |@LB@ 49 1@LB@@LB@@LB@Energy -16.66 kcal/mol@LB@Hybridization Energy -35.4585 kcal/mol@LB@Unfolding Energy - mRNA 5.43289 kcal/mol@LB@Unfolding Energy - sRNA 13.3693 kcal/mol@LB@@LB@Position - mRNA 232 -- 294@LB@Position - sRNA 1 -- 48@LB@Position Seed - mRNA 288 -- 294@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 168 |
0.02071 |
0.4072 |
b2431 |
yfeX |
-10.86 |
0.137197 |
192 -- 213 |
24 -- 58 |
porphyrinogen oxidase cytoplasmic |
|
_____________191_________________________________214\n_____________|___________________________________|\n5'-AUU...UUUCA_____AA____________________________AGAGU...CCA-3'\n______________GGAGG_________CAAUGUC______UCAGGUUC\n______________|||:|_________|||||||______||||||||\n______________CCUUC_________GUUACAG______AGUCCAAG\n3'-UUU...UAUGA_____GUUACACUC_______CACGAA________AGGCG...GCG-5'\n_____________|___________________________________|\n_____________59__________________________________23\n |
207 -- 213 |
24 -- 30 |
-23.408 kcal/mol |
4.6321 kcal/mol |
7.91302 kcal/mol |
191 214@LB@ | |@LB@5'-AUU...UUUCA AA AGAGU...CCA-3'@LB@ GGAGG CAAUGUC UCAGGUUC@LB@ |||:| ||||||| ||||||||@LB@ CCUUC GUUACAG AGUCCAAG@LB@3'-UUU...UAUGA GUUACACUC CACGAA AGGCG...GCG-5'@LB@ | |@LB@ 59 23@LB@@LB@@LB@Energy -10.86 kcal/mol@LB@Hybridization Energy -23.408 kcal/mol@LB@Unfolding Energy - mRNA 4.6321 kcal/mol@LB@Unfolding Energy - sRNA 7.91302 kcal/mol@LB@@LB@Position - mRNA 192 -- 213@LB@Position - sRNA 24 -- 58@LB@Position Seed - mRNA 207 -- 213@LB@Position Seed - sRNA 24 -- 30@LB@ |
| 33 |
0.003005 |
0.2776 |
b0698 |
kdpA |
-12.81 |
0.065301 |
205 -- 229 |
1 -- 24 |
potassium translocating ATPase subunit A |
|
_____________204_______________________230\n_____________|_________________________|\n5'-GCU...GAUGG__G___A____U___UA________CACGU...ACA-3'\n______________CU_CGC_AGGG_UCU__CUGAUCGC\n______________||_|||_||||_|||__||||||||\n______________GA_GCG_UCCC_AGA__GACUAGCG\n3'-UUU...UCCAA__G___C________AG________-5'\n_____________|________________________|\n_____________25_______________________1\n |
223 -- 229 |
1 -- 7 |
-32.8008 kcal/mol |
12.2882 kcal/mol |
7.69932 kcal/mol |
204 230@LB@ | |@LB@5'-GCU...GAUGG G A U UA CACGU...ACA-3'@LB@ CU CGC AGGG UCU CUGAUCGC@LB@ || ||| |||| ||| ||||||||@LB@ GA GCG UCCC AGA GACUAGCG@LB@3'-UUU...UCCAA G C AG -5'@LB@ | |@LB@ 25 1@LB@@LB@@LB@Energy -12.81 kcal/mol@LB@Hybridization Energy -32.8008 kcal/mol@LB@Unfolding Energy - mRNA 12.2882 kcal/mol@LB@Unfolding Energy - sRNA 7.69932 kcal/mol@LB@@LB@Position - mRNA 205 -- 229@LB@Position - sRNA 1 -- 24@LB@Position Seed - mRNA 223 -- 229@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 129 |
0.01401 |
0.3627 |
b0696 |
kdpC |
-11.63 |
0.102829 |
282 -- 295 |
49 -- 63 |
potassium translocating ATPase subunit C |
|
_____________281_____________296\n_____________|_______________|\n5'-GCG...CCACC_______________GUGGU-3'\n______________GUACUGG_GGCAAUG\n______________:||||||_:||||||\n______________UAUGACC_UCGUUAC\n3'-UUU...UUCAU_______U_______ACUCG...GCG-5'\n_____________|_______________|\n_____________64______________48\n |
289 -- 295 |
49 -- 55 |
-18.0603 kcal/mol |
3.42021 kcal/mol |
3.01015 kcal/mol |
281 296@LB@ | |@LB@5'-GCG...CCACC GUGGU-3'@LB@ GUACUGG GGCAAUG@LB@ :|||||| :||||||@LB@ UAUGACC UCGUUAC@LB@3'-UUU...UUCAU U ACUCG...GCG-5'@LB@ | |@LB@ 64 48@LB@@LB@@LB@Energy -11.63 kcal/mol@LB@Hybridization Energy -18.0603 kcal/mol@LB@Unfolding Energy - mRNA 3.42021 kcal/mol@LB@Unfolding Energy - sRNA 3.01015 kcal/mol@LB@@LB@Position - mRNA 282 -- 295@LB@Position - sRNA 49 -- 63@LB@Position Seed - mRNA 289 -- 295@LB@Position Seed - sRNA 49 -- 55@LB@ |
| 12 |
0.0007887 |
0.2153 |
b3981 |
secE |
-14.50 |
0.033700 |
225 -- 262 |
36 -- 90 |
preprotein translocase membrane subunit |
|
_____________224_____________________________________________________263\n_____________|_______________________________________________________|\n5'-UAA...CUCAA______G___________________________________A____________UGUGG...ACU-3'\n______________GGAAGC_GGCGC__GGC_____________CUGGAAGCGAUG__AGUGG_GUCGU\n______________::||||_:||:|__|||_____________||||||||:|||__||:::_|||||\n______________UUUUCG_UCGUG__CCG_____________GACCUUCGUUAC__UCGUU_CAGCA\n___________3'-______G_____GG___ACCGAUUCAUUAU____________AC_____A_____CGAAA...GCG-5'\n______________|______________________________________________________|\n______________90_____________________________________________________35\n |
245 -- 251 |
49 -- 55 |
-44.4001 kcal/mol |
14.9847 kcal/mol |
14.9108 kcal/mol |
224 263@LB@ | |@LB@5'-UAA...CUCAA G A UGUGG...ACU-3'@LB@ GGAAGC GGCGC GGC CUGGAAGCGAUG AGUGG GUCGU@LB@ ::|||| :||:| ||| ||||||||:||| ||::: |||||@LB@ UUUUCG UCGUG CCG GACCUUCGUUAC UCGUU CAGCA@LB@ 3'- G GG ACCGAUUCAUUAU AC A CGAAA...GCG-5'@LB@ | |@LB@ 90 35@LB@@LB@@LB@Energy -14.50 kcal/mol@LB@Hybridization Energy -44.4001 kcal/mol@LB@Unfolding Energy - mRNA 14.9847 kcal/mol@LB@Unfolding Energy - sRNA 14.9108 kcal/mol@LB@@LB@Position - mRNA 225 -- 262@LB@Position - sRNA 36 -- 90@LB@Position Seed - mRNA 245 -- 251@LB@Position Seed - sRNA 49 -- 55@LB@ |
| 6 |
0.0003052 |
0.1521 |
b4255 |
rraB |
-18.72 |
0.006315 |
136 -- 158 |
39 -- 61 |
protein inhibitor of RNase E |
|
_____________135_____________________159\n_____________|_______________________|\n5'-GAG...ACAAA_G____________C________GUGAC...CCA-3'\n______________G_UGGAGGCAAUGU_AGUGGUGU\n______________:_||||:|||||||_||:::|||\n______________U_ACCUUCGUUACA_UCGUUACA\n3'-UUU...CAUUA_G____________C________GCACG...GCG-5'\n_____________|_______________________|\n_____________62______________________38\n |
152 -- 158 |
39 -- 45 |
-27.5113 kcal/mol |
5.49395 kcal/mol |
3.30099 kcal/mol |
135 159@LB@ | |@LB@5'-GAG...ACAAA G C GUGAC...CCA-3'@LB@ G UGGAGGCAAUGU AGUGGUGU@LB@ : ||||:||||||| ||:::|||@LB@ U ACCUUCGUUACA UCGUUACA@LB@3'-UUU...CAUUA G C GCACG...GCG-5'@LB@ | |@LB@ 62 38@LB@@LB@@LB@Energy -18.72 kcal/mol@LB@Hybridization Energy -27.5113 kcal/mol@LB@Unfolding Energy - mRNA 5.49395 kcal/mol@LB@Unfolding Energy - sRNA 3.30099 kcal/mol@LB@@LB@Position - mRNA 136 -- 158@LB@Position - sRNA 39 -- 61@LB@Position Seed - mRNA 152 -- 158@LB@Position Seed - sRNA 39 -- 45@LB@ |
| 136 |
0.01542 |
0.379 |
b0428 |
cyoE |
-15.83 |
0.019915 |
1 -- 35 |
23 -- 58 |
protoheme IX farnesyltransferase |
|
______________1____________________________________36\n______________|____________________________________|\n___________5'-_________CCU_______GCA___G_A_________GGUGC...GCA-3'\n______________GGAA_CAAU___GGCAAUG___GUG_U__CAGGUUCU\n______________||||_||||___:||||||___|||_|__||||||||\n______________CCUU_GUUA___UCGUUAC___CAC_A__GUCCAAGA\n3'-UUU...UAUGA____C____CAC_______AG____G_AA________GGCGC...GCG-5'\n_____________|_____________________________________|\n_____________59____________________________________22\n |
29 -- 35 |
23 -- 29 |
-31.8533 kcal/mol |
8.10531 kcal/mol |
7.91355 kcal/mol |
1 36@LB@ | |@LB@ 5'- CCU GCA G A GGUGC...GCA-3'@LB@ GGAA CAAU GGCAAUG GUG U CAGGUUCU@LB@ |||| |||| :|||||| ||| | ||||||||@LB@ CCUU GUUA UCGUUAC CAC A GUCCAAGA@LB@3'-UUU...UAUGA C CAC AG G AA GGCGC...GCG-5'@LB@ | |@LB@ 59 22@LB@@LB@@LB@Energy -15.83 kcal/mol@LB@Hybridization Energy -31.8533 kcal/mol@LB@Unfolding Energy - mRNA 8.10531 kcal/mol@LB@Unfolding Energy - sRNA 7.91355 kcal/mol@LB@@LB@Position - mRNA 1 -- 35@LB@Position - sRNA 23 -- 58@LB@Position Seed - mRNA 29 -- 35@LB@Position Seed - sRNA 23 -- 29@LB@ |
| 99 |
0.01025 |
0.3393 |
b1887 |
cheW |
-9.13 |
0.255901 |
16 -- 66 |
38 -- 87 |
purine-binding chemotaxis protein |
|
_____________15___________________________________________________67\n_____________|____________________________________________________|\n5'-GUG...UAAUU_____A____A___UG_______AAACC____A______CUAUC____A___CCCGG...UCC-3'\n______________GGUCA_CACC_GGU__UGGUUAA______UUG_AAGUAA_____GCAA_GUC\n______________:|:||_||||_||:__|||:|||______:||_|||:||_____||||_|||\n______________UCGGU_GUGG_CCG__ACCGAUU______GAC_UUCGUU_____CGUU_CAG\n________3'-UUU_____C____G____________CAUUAU___C______ACACU____A___CACGA...GCG-5'\n_____________|____________________________________________________|\n_____________88___________________________________________________37\n |
32 -- 38 |
67 -- 73 |
-34.6295 kcal/mol |
10.5892 kcal/mol |
14.9106 kcal/mol |
15 67@LB@ | |@LB@5'-GUG...UAAUU A A UG AAACC A CUAUC A CCCGG...UCC-3'@LB@ GGUCA CACC GGU UGGUUAA UUG AAGUAA GCAA GUC@LB@ :|:|| |||| ||: |||:||| :|| |||:|| |||| |||@LB@ UCGGU GUGG CCG ACCGAUU GAC UUCGUU CGUU CAG@LB@ 3'-UUU C G CAUUAU C ACACU A CACGA...GCG-5'@LB@ | |@LB@ 88 37@LB@@LB@@LB@Energy -9.13 kcal/mol@LB@Hybridization Energy -34.6295 kcal/mol@LB@Unfolding Energy - mRNA 10.5892 kcal/mol@LB@Unfolding Energy - sRNA 14.9106 kcal/mol@LB@@LB@Position - mRNA 16 -- 66@LB@Position - sRNA 38 -- 87@LB@Position Seed - mRNA 32 -- 38@LB@Position Seed - sRNA 67 -- 73@LB@ |
