142 |
0.01677 |
0.3964 |
b3208 |
mtgA |
-9.50 |
0.224857 |
30 -- 43 |
54 -- 67 |
biosynthetic peptidoglycan transglycosylase |
|
_____________29_____________44\n_____________|______________|\n5'-UUG...ACCGC__A___________AGAUG...UGU-3'\n______________AG_AGUGCUGGAAG\n______________||_|:|:|||||||\n______________UC_UUAUGACCUUC\n3'-UUU...CCGAU__A___________GUUAC...GCG-5'\n_____________|______________|\n_____________68_____________53\n |
37 -- 43 |
54 -- 60 |
-16.1342 kcal/mol |
3.92242 kcal/mol |
2.71077 kcal/mol |
29 44@LB@ | |@LB@5'-UUG...ACCGC A AGAUG...UGU-3'@LB@ AG AGUGCUGGAAG@LB@ || |:|:|||||||@LB@ UC UUAUGACCUUC@LB@3'-UUU...CCGAU A GUUAC...GCG-5'@LB@ | |@LB@ 68 53@LB@@LB@@LB@Energy -9.50 kcal/mol@LB@Hybridization Energy -16.1342 kcal/mol@LB@Unfolding Energy - mRNA 3.92242 kcal/mol@LB@Unfolding Energy - sRNA 2.71077 kcal/mol@LB@@LB@Position - mRNA 30 -- 43@LB@Position - sRNA 54 -- 67@LB@Position Seed - mRNA 37 -- 43@LB@Position Seed - sRNA 54 -- 60@LB@ |
181 |
0.0223 |
0.4113 |
b3770 |
ilvE |
-12.64 |
0.069830 |
250 -- 281 |
37 -- 61 |
branched-chain amino acid aminotransferase |
|
_____________249______________________________282\n_____________|________________________________|\n5'-UUU...GGUUC_______AGAC____AG___CAU_________CACGC...GCA-3'\n______________GCUGGGA____GCGA__GUG___GUGAUGUCG\n______________:||||:|____||:|__|||___|::||||||\n______________UGACCUU____CGUU__CAC___CGUUACAGC\n3'-UUU...CAUUA_______________A____U___________ACGAA...GCG-5'\n_____________|________________________________|\n_____________62_______________________________36\n |
275 -- 281 |
37 -- 43 |
-25.0056 kcal/mol |
9.06403 kcal/mol |
3.30158 kcal/mol |
249 282@LB@ | |@LB@5'-UUU...GGUUC AGAC AG CAU CACGC...GCA-3'@LB@ GCUGGGA GCGA GUG GUGAUGUCG@LB@ :||||:| ||:| ||| |::||||||@LB@ UGACCUU CGUU CAC CGUUACAGC@LB@3'-UUU...CAUUA A U ACGAA...GCG-5'@LB@ | |@LB@ 62 36@LB@@LB@@LB@Energy -12.64 kcal/mol@LB@Hybridization Energy -25.0056 kcal/mol@LB@Unfolding Energy - mRNA 9.06403 kcal/mol@LB@Unfolding Energy - sRNA 3.30158 kcal/mol@LB@@LB@Position - mRNA 250 -- 281@LB@Position - sRNA 37 -- 61@LB@Position Seed - mRNA 275 -- 281@LB@Position Seed - sRNA 37 -- 43@LB@ |
67 |
0.005865 |
0.2905 |
b4138 |
dcuA |
-11.52 |
0.107256 |
35 -- 44 |
73 -- 82 |
C4-dicarboxylate antiporter |
|
_____________34_________45\n_____________|__________|\n5'-AAC...CUGAU__________UACAA...UGG-3'\n______________GCACCCGGCU\n______________||||||||||\n______________CGUGGGCCGA\n___3'-UUUUCGGU__________CCGAU...GCG-5'\n_____________|__________|\n_____________83_________72\n |
38 -- 44 |
73 -- 79 |
-22.0144 kcal/mol |
2.69052 kcal/mol |
7.80512 kcal/mol |
34 45@LB@ | |@LB@5'-AAC...CUGAU UACAA...UGG-3'@LB@ GCACCCGGCU@LB@ ||||||||||@LB@ CGUGGGCCGA@LB@ 3'-UUUUCGGU CCGAU...GCG-5'@LB@ | |@LB@ 83 72@LB@@LB@@LB@Energy -11.52 kcal/mol@LB@Hybridization Energy -22.0144 kcal/mol@LB@Unfolding Energy - mRNA 2.69052 kcal/mol@LB@Unfolding Energy - sRNA 7.80512 kcal/mol@LB@@LB@Position - mRNA 35 -- 44@LB@Position - sRNA 73 -- 82@LB@Position Seed - mRNA 38 -- 44@LB@Position Seed - sRNA 73 -- 79@LB@ |
180 |
0.02216 |
0.4113 |
b4123 |
dcuB |
-12.05 |
0.087474 |
186 -- 195 |
12 -- 21 |
C4-dicarboxylate transporter anaerobic; DcuS co-sensor |
|
_____________185________196\n_____________|__________|\n5'-UCU...AUUAU__________CACAC...UGG-3'\n______________CGCGAGGGUU\n______________|||||||||:\n______________GCGCUCCCAG\n3'-UUU...AAGAG__________AAGGA...GCG-5'\n_____________|__________|\n_____________22_________11\n |
189 -- 195 |
12 -- 18 |
-19.9032 kcal/mol |
3.47865 kcal/mol |
4.37028 kcal/mol |
185 196@LB@ | |@LB@5'-UCU...AUUAU CACAC...UGG-3'@LB@ CGCGAGGGUU@LB@ |||||||||:@LB@ GCGCUCCCAG@LB@3'-UUU...AAGAG AAGGA...GCG-5'@LB@ | |@LB@ 22 11@LB@@LB@@LB@Energy -12.05 kcal/mol@LB@Hybridization Energy -19.9032 kcal/mol@LB@Unfolding Energy - mRNA 3.47865 kcal/mol@LB@Unfolding Energy - sRNA 4.37028 kcal/mol@LB@@LB@Position - mRNA 186 -- 195@LB@Position - sRNA 12 -- 21@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 12 -- 18@LB@ |
38 |
0.003171 |
0.2776 |
b0033 |
carB |
-16.38 |
0.016045 |
157 -- 203 |
40 -- 88 |
carbamoyl-phosphate synthase large subunit |
|
_____________156_________________________________________________204\n_____________|___________________________________________________|\n5'-GCA...UAAUU___________GUAAAACC____________A________AA_____C___CCAAA...CGU-3'\n______________GAG_CAGUACC________GCUAAGUAAU_C_GG_AGUAA___GAGC_AUG\n______________:||_|||:|||________||||||||||_|_||_||:||___||||_|||\n______________UUC_GUCGUGG________CGAUUCAUUA_G_CC_UCGUU___CUCG_UAC\n_________3'-UU___G_______GCCGAC____________U_A__U_____ACA____U___AGCAC...GCG-5'\n_____________|___________________________________________________|\n_____________89__________________________________________________39\n |
178 -- 184 |
62 -- 68 |
-37.8454 kcal/mol |
6.5567 kcal/mol |
14.9104 kcal/mol |
156 204@LB@ | |@LB@5'-GCA...UAAUU GUAAAACC A AA C CCAAA...CGU-3'@LB@ GAG CAGUACC GCUAAGUAAU C GG AGUAA GAGC AUG@LB@ :|| |||:||| |||||||||| | || ||:|| |||| |||@LB@ UUC GUCGUGG CGAUUCAUUA G CC UCGUU CUCG UAC@LB@ 3'-UU G GCCGAC U A U ACA U AGCAC...GCG-5'@LB@ | |@LB@ 89 39@LB@@LB@@LB@Energy -16.38 kcal/mol@LB@Hybridization Energy -37.8454 kcal/mol@LB@Unfolding Energy - mRNA 6.5567 kcal/mol@LB@Unfolding Energy - sRNA 14.9104 kcal/mol@LB@@LB@Position - mRNA 157 -- 203@LB@Position - sRNA 40 -- 88@LB@Position Seed - mRNA 178 -- 184@LB@Position Seed - sRNA 62 -- 68@LB@ |
115 |
0.01202 |
0.3513 |
b1881 |
cheZ |
-13.42 |
0.051545 |
178 -- 197 |
37 -- 61 |
chemotaxis regulator protein phosphatase for CheY |
|
_____________177_______________________198\n_____________|_________________________|\n5'-AUU...GAGAA_________________________ACUAU...GGG-3'\n______________ACUGG__GC_AUGUGAG_GAUG_CG\n______________|||||__||_|||||||_:|||_||\n______________UGACC__CG_UACACUC_UUAC_GC\n3'-UUU...CAUUA_____UU__U_______G____A__ACGAA...GCG-5'\n_____________|_________________________|\n_____________62________________________36\n |
185 -- 191 |
45 -- 51 |
-22.2356 kcal/mol |
5.51256 kcal/mol |
3.30158 kcal/mol |
177 198@LB@ | |@LB@5'-AUU...GAGAA ACUAU...GGG-3'@LB@ ACUGG GC AUGUGAG GAUG CG@LB@ ||||| || ||||||| :||| ||@LB@ UGACC CG UACACUC UUAC GC@LB@3'-UUU...CAUUA UU U G A ACGAA...GCG-5'@LB@ | |@LB@ 62 36@LB@@LB@@LB@Energy -13.42 kcal/mol@LB@Hybridization Energy -22.2356 kcal/mol@LB@Unfolding Energy - mRNA 5.51256 kcal/mol@LB@Unfolding Energy - sRNA 3.30158 kcal/mol@LB@@LB@Position - mRNA 178 -- 197@LB@Position - sRNA 37 -- 61@LB@Position Seed - mRNA 185 -- 191@LB@Position Seed - sRNA 45 -- 51@LB@ |
42 |
0.003478 |
0.2776 |
b1882 |
cheY |
-11.00 |
0.130280 |
3 -- 21 |
36 -- 55 |
chemotaxis regulator transmitting signal to flagellar motor component |
|
_____________2____________________22\n_____________|____________________|\n_________5'-GC__G_____U___________CAGGC...UUG-3'\n______________GG_AAUGU_GGCGAUG_CGU\n______________:|_|||||_:||:|||_|||\n______________UC_UUACA_UCGUUAC_GCA\n3'-UUU...GACCU__G_____C_______A___CGAAA...GCG-5'\n_____________|____________________|\n_____________56___________________35\n |
12 -- 18 |
40 -- 46 |
-18.9303 kcal/mol |
4.70419 kcal/mol |
3.22441 kcal/mol |
2 22@LB@ | |@LB@ 5'-GC G U CAGGC...UUG-3'@LB@ GG AAUGU GGCGAUG CGU@LB@ :| ||||| :||:||| |||@LB@ UC UUACA UCGUUAC GCA@LB@3'-UUU...GACCU G C A CGAAA...GCG-5'@LB@ | |@LB@ 56 35@LB@@LB@@LB@Energy -11.00 kcal/mol@LB@Hybridization Energy -18.9303 kcal/mol@LB@Unfolding Energy - mRNA 4.70419 kcal/mol@LB@Unfolding Energy - sRNA 3.22441 kcal/mol@LB@@LB@Position - mRNA 3 -- 21@LB@Position - sRNA 36 -- 55@LB@Position Seed - mRNA 12 -- 18@LB@Position Seed - sRNA 40 -- 46@LB@ |
22 |
0.001794 |
0.2682 |
b1992 |
cobS |
-11.39 |
0.112398 |
162 -- 208 |
42 -- 83 |
cobalamin synthase |
|
_____________161________________________________________________209\n_____________|__________________________________________________|\n5'-GAG...AAUGA______________GGUUUCG______________AAAUCAAA_______AUUAU...GUA-3'\n______________AGUAU__GGCUGGU_______GGUAUUGG_AGUAA________UGAGUAA\n______________||:|:__||||||:_______::||:|||_||:||________||||:||\n______________UCGUG__CCGACCG_______UUAUGACC_UCGUU________ACUCGUU\n____3'-UUUUCGG_____GG_______AUUCA__________U_____AC_____________ACAGC...GCG-5'\n_____________|__________________________________________________|\n_____________84_________________________________________________41\n |
202 -- 208 |
42 -- 48 |
-33.2748 kcal/mol |
6.99193 kcal/mol |
14.8879 kcal/mol |
161 209@LB@ | |@LB@5'-GAG...AAUGA GGUUUCG AAAUCAAA AUUAU...GUA-3'@LB@ AGUAU GGCUGGU GGUAUUGG AGUAA UGAGUAA@LB@ ||:|: ||||||: ::||:||| ||:|| ||||:||@LB@ UCGUG CCGACCG UUAUGACC UCGUU ACUCGUU@LB@ 3'-UUUUCGG GG AUUCA U AC ACAGC...GCG-5'@LB@ | |@LB@ 84 41@LB@@LB@@LB@Energy -11.39 kcal/mol@LB@Hybridization Energy -33.2748 kcal/mol@LB@Unfolding Energy - mRNA 6.99193 kcal/mol@LB@Unfolding Energy - sRNA 14.8879 kcal/mol@LB@@LB@Position - mRNA 162 -- 208@LB@Position - sRNA 42 -- 83@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 42 -- 48@LB@ |
192 |
0.02457 |
0.4226 |
b2689 |
yqaA |
-16.30 |
0.016522 |
258 -- 300 |
44 -- 85 |
COG1238 family inner membrane protein |
|
_____________257_________________________________________300\n_____________|___________________________________________|\n5'-CAC...CUACA___U________AACUCCG____C_______U________U___-3'\n______________CUA_UACCCGGC_______AAGU_GUGCUGG_GGCAAUGU__GC\n______________|:|_:|||||||_______||||_:|:||||_:|||||||__||\n______________GGU_GUGGGCCG_______UUCA_UAUGACC_UCGUUACA__CG\n______3'-UUUUC___C________ACCGA______U_______U________CU__UUACA...GCG-5'\n_____________|____________________________________________|\n_____________86___________________________________________43\n |
291 -- 297 |
48 -- 54 |
-43.3701 kcal/mol |
12.1561 kcal/mol |
14.9093 kcal/mol |
257 300@LB@ | |@LB@5'-CAC...CUACA U AACUCCG C U U -3'@LB@ CUA UACCCGGC AAGU GUGCUGG GGCAAUGU GC@LB@ |:| :||||||| |||| :|:|||| :||||||| ||@LB@ GGU GUGGGCCG UUCA UAUGACC UCGUUACA CG@LB@ 3'-UUUUC C ACCGA U U CU UUACA...GCG-5'@LB@ | |@LB@ 86 43@LB@@LB@@LB@Energy -16.30 kcal/mol@LB@Hybridization Energy -43.3701 kcal/mol@LB@Unfolding Energy - mRNA 12.1561 kcal/mol@LB@Unfolding Energy - sRNA 14.9093 kcal/mol@LB@@LB@Position - mRNA 258 -- 300@LB@Position - sRNA 44 -- 85@LB@Position Seed - mRNA 291 -- 297@LB@Position Seed - sRNA 48 -- 54@LB@ |
172 |
0.02103 |
0.4072 |
b2043 |
wcaM |
-13.25 |
0.055075 |
7 -- 38 |
49 -- 84 |
colanic acid biosynthesis protein |
|
_____________6_____________________________________39\n_____________|_____________________________________|\n_____5'-GGCUGA__A__________________C_____A_________CUCGC...AAA-3'\n______________CA__AUCCGGCUGGCU_GGUG___CUG_GAA_CGAUG\n______________||__|:||||||||||_:||:___|||_|||_|:|||\n______________GU__UGGGCCGACCGA_UCAU___GAC_CUU_GUUAC\n_____3'-UUUUCG__CG____________U____UAU_______C_____ACUCG...GCG-5'\n_____________|_____________________________________|\n_____________85____________________________________48\n |
15 -- 21 |
69 -- 75 |
-36.8983 kcal/mol |
9.08712 kcal/mol |
14.5597 kcal/mol |
6 39@LB@ | |@LB@ 5'-GGCUGA A C A CUCGC...AAA-3'@LB@ CA AUCCGGCUGGCU GGUG CUG GAA CGAUG@LB@ || |:|||||||||| :||: ||| ||| |:|||@LB@ GU UGGGCCGACCGA UCAU GAC CUU GUUAC@LB@ 3'-UUUUCG CG U UAU C ACUCG...GCG-5'@LB@ | |@LB@ 85 48@LB@@LB@@LB@Energy -13.25 kcal/mol@LB@Hybridization Energy -36.8983 kcal/mol@LB@Unfolding Energy - mRNA 9.08712 kcal/mol@LB@Unfolding Energy - sRNA 14.5597 kcal/mol@LB@@LB@Position - mRNA 7 -- 38@LB@Position - sRNA 49 -- 84@LB@Position Seed - mRNA 15 -- 21@LB@Position Seed - sRNA 69 -- 75@LB@ |