| 149 |
0.01819 |
0.4072 |
b2708 |
srlQ |
-10.57 |
0.153166 |
157 -- 203 |
40 -- 61 |
D-arabinose 5-phosphate isomerase |
|
_____________156_____________________________________________204\n_____________|_______________________________________________|\n5'-UAC...CAGGC________AGAAAGGGAU______GAUCAUAACCGGAGA________AGUGA...GCG-3'\n______________GCUGGAAG__________CGAUGU_______________GAGCAAUG\n______________:|||||||__________|:||||_______________||||||||\n______________UGACCUUC__________GUUACA_______________CUCGUUAC\n3'-UUU...CAUUA_______________________________________________AGCAC...GCG-5'\n_____________|_______________________________________________|\n_____________62______________________________________________39\n |
197 -- 203 |
40 -- 46 |
-23.3244 kcal/mol |
9.45822 kcal/mol |
3.30075 kcal/mol |
156 204@LB@ | |@LB@5'-UAC...CAGGC AGAAAGGGAU GAUCAUAACCGGAGA AGUGA...GCG-3'@LB@ GCUGGAAG CGAUGU GAGCAAUG@LB@ :||||||| |:|||| ||||||||@LB@ UGACCUUC GUUACA CUCGUUAC@LB@3'-UUU...CAUUA AGCAC...GCG-5'@LB@ | |@LB@ 62 39@LB@@LB@@LB@Energy -10.57 kcal/mol@LB@Hybridization Energy -23.3244 kcal/mol@LB@Unfolding Energy - mRNA 9.45822 kcal/mol@LB@Unfolding Energy - sRNA 3.30075 kcal/mol@LB@@LB@Position - mRNA 157 -- 203@LB@Position - sRNA 40 -- 61@LB@Position Seed - mRNA 197 -- 203@LB@Position Seed - sRNA 40 -- 46@LB@ |
| 102 |
0.01034 |
0.3393 |
b3128 |
garD |
-8.06 |
0.364232 |
93 -- 113 |
5 -- 25 |
D-galactarate dehydrogenase |
|
_____________92____________________114\n_____________|_____________________|\n5'-AUA...UCACA________UUUAAAC______CAUUC...UGA-3'\n______________UUUCUGCG_______UCCUGA\n______________|:||:|||_______||||||\n______________AGAGGCGC_______AGGACU\n3'-UUU...GUCCA________UCCCAGA______AGCG-5'\n_____________|_____________________|\n_____________26____________________4\n |
94 -- 100 |
18 -- 24 |
-19.1191 kcal/mol |
3.34271 kcal/mol |
7.71155 kcal/mol |
92 114@LB@ | |@LB@5'-AUA...UCACA UUUAAAC CAUUC...UGA-3'@LB@ UUUCUGCG UCCUGA@LB@ |:||:||| ||||||@LB@ AGAGGCGC AGGACU@LB@3'-UUU...GUCCA UCCCAGA AGCG-5'@LB@ | |@LB@ 26 4@LB@@LB@@LB@Energy -8.06 kcal/mol@LB@Hybridization Energy -19.1191 kcal/mol@LB@Unfolding Energy - mRNA 3.34271 kcal/mol@LB@Unfolding Energy - sRNA 7.71155 kcal/mol@LB@@LB@Position - mRNA 93 -- 113@LB@Position - sRNA 5 -- 25@LB@Position Seed - mRNA 94 -- 100@LB@Position Seed - sRNA 18 -- 24@LB@ |
| 139 |
0.01578 |
0.3813 |
b3386 |
rpe |
-11.91 |
0.092481 |
276 -- 300 |
34 -- 60 |
D-ribulose-5-phosphate 3-epimerase |
|
_____________275_________________________300\n_____________|___________________________|\n5'-CGC...AAGCC____C_________C__U__________-3'\n______________CUGG_AGC__UG_G_GC_GAUGUCGUGC\n______________||||_|||__||_|_||_:|||||||||\n______________GACC_UCG__AC_C_CG_UUACAGCACG\n3'-UUU...AUUAU____U___UU__A_U_____________AAAGU...GCG-5'\n_____________|____________________________|\n_____________61___________________________33\n |
294 -- 300 |
34 -- 40 |
-27.2321 kcal/mol |
8.55668 kcal/mol |
6.76671 kcal/mol |
275 300@LB@ | |@LB@5'-CGC...AAGCC C C U -3'@LB@ CUGG AGC UG G GC GAUGUCGUGC@LB@ |||| ||| || | || :|||||||||@LB@ GACC UCG AC C CG UUACAGCACG@LB@3'-UUU...AUUAU U UU A U AAAGU...GCG-5'@LB@ | |@LB@ 61 33@LB@@LB@@LB@Energy -11.91 kcal/mol@LB@Hybridization Energy -27.2321 kcal/mol@LB@Unfolding Energy - mRNA 8.55668 kcal/mol@LB@Unfolding Energy - sRNA 6.76671 kcal/mol@LB@@LB@Position - mRNA 276 -- 300@LB@Position - sRNA 34 -- 60@LB@Position Seed - mRNA 294 -- 300@LB@Position Seed - sRNA 34 -- 40@LB@ |
| 7 |
0.0003168 |
0.1521 |
b0894 |
dmsA |
-18.01 |
0.008378 |
163 -- 184 |
42 -- 62 |
dimethyl sulfoxide reductase anaerobic subunit A |
b1588 b1587 |
_____________162____________________185\n_____________|______________________|\n5'-CUU...UUUGU________U____C________GCUUG...GCG-3'\n______________UACUGGAA_CAAU_GUGAGCAA\n______________||||||||_||||_||||||||\n______________AUGACCUU_GUUA_CACUCGUU\n3'-UUU...UCAUU________C_____________ACAGC...GCG-5'\n_____________|______________________|\n_____________63_____________________41\n |
178 -- 184 |
42 -- 48 |
-26.0413 kcal/mol |
4.73109 kcal/mol |
3.30151 kcal/mol |
162 185@LB@ | |@LB@5'-CUU...UUUGU U C GCUUG...GCG-3'@LB@ UACUGGAA CAAU GUGAGCAA@LB@ |||||||| |||| ||||||||@LB@ AUGACCUU GUUA CACUCGUU@LB@3'-UUU...UCAUU C ACAGC...GCG-5'@LB@ | |@LB@ 63 41@LB@@LB@@LB@Energy -18.01 kcal/mol@LB@Hybridization Energy -26.0413 kcal/mol@LB@Unfolding Energy - mRNA 4.73109 kcal/mol@LB@Unfolding Energy - sRNA 3.30151 kcal/mol@LB@@LB@Position - mRNA 163 -- 184@LB@Position - sRNA 42 -- 62@LB@Position Seed - mRNA 178 -- 184@LB@Position Seed - sRNA 42 -- 48@LB@ |
| 106 |
0.01088 |
0.3447 |
b3543 |
dppB |
-11.69 |
0.100651 |
144 -- 153 |
41 -- 50 |
dipeptide/heme ABC transporter permease |
|
_____________143________154\n_____________|__________|\n5'-CGG...UGAUU__________ACAGA...AUC-3'\n______________UGUGAGCAAU\n______________||||||||||\n______________ACACUCGUUA\n3'-UUU...UCGUU__________CAGCA...GCG-5'\n_____________|__________|\n_____________51_________40\n |
147 -- 153 |
41 -- 47 |
-14.8509 kcal/mol |
2.00067 kcal/mol |
1.16388 kcal/mol |
143 154@LB@ | |@LB@5'-CGG...UGAUU ACAGA...AUC-3'@LB@ UGUGAGCAAU@LB@ ||||||||||@LB@ ACACUCGUUA@LB@3'-UUU...UCGUU CAGCA...GCG-5'@LB@ | |@LB@ 51 40@LB@@LB@@LB@Energy -11.69 kcal/mol@LB@Hybridization Energy -14.8509 kcal/mol@LB@Unfolding Energy - mRNA 2.00067 kcal/mol@LB@Unfolding Energy - sRNA 1.16388 kcal/mol@LB@@LB@Position - mRNA 144 -- 153@LB@Position - sRNA 41 -- 50@LB@Position Seed - mRNA 147 -- 153@LB@Position Seed - sRNA 41 -- 47@LB@ |
| 125 |
0.0136 |
0.3627 |
b3647 |
ligB |
-15.20 |
0.025592 |
210 -- 279 |
1 -- 59 |
DNA ligase NAD(+)-dependent |
|
_____________209_____________________________________________________________________280\n_____________|_______________________________________________________________________|\n5'-GGC...AAGUA____U______AUUAAUA____UC________GG__AUCA___G______C_____GUCCGG_________CAGCC...AAA-3'\n______________UGGA_GGCGAU_______GGUA___UUGUGCU__CA____UCU_UGUGGG_GGUCU______CCUGGUCGC\n______________||||_:||:||_______:|:|___|:|||||__||____|||_:|:|:|_|||||______||||:||||\n______________ACCU_UCGUUA_______UCGU___AGCACGA__GU____AGA_GCGCUC_CCAGA______GGACUAGCG\n3'-UUU...UUAUG___________CAC________UAC_______AA__CCA____G____________A______________-5'\n_____________|______________________________________________________________________|\n_____________60_____________________________________________________________________1\n |
273 -- 279 |
1 -- 7 |
-52.2567 kcal/mol |
22.9457 kcal/mol |
14.1095 kcal/mol |
209 280@LB@ | |@LB@5'-GGC...AAGUA U AUUAAUA UC GG AUCA G C GUCCGG CAGCC...AAA-3'@LB@ UGGA GGCGAU GGUA UUGUGCU CA UCU UGUGGG GGUCU CCUGGUCGC@LB@ |||| :||:|| :|:| |:||||| || ||| :|:|:| ||||| ||||:||||@LB@ ACCU UCGUUA UCGU AGCACGA GU AGA GCGCUC CCAGA GGACUAGCG@LB@3'-UUU...UUAUG CAC UAC AA CCA G A -5'@LB@ | |@LB@ 60 1@LB@@LB@@LB@Energy -15.20 kcal/mol@LB@Hybridization Energy -52.2567 kcal/mol@LB@Unfolding Energy - mRNA 22.9457 kcal/mol@LB@Unfolding Energy - sRNA 14.1095 kcal/mol@LB@@LB@Position - mRNA 210 -- 279@LB@Position - sRNA 1 -- 59@LB@Position Seed - mRNA 273 -- 279@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 133 |
0.0147 |
0.3709 |
b3832 |
rmuC |
-11.93 |
0.091595 |
31 -- 71 |
21 -- 63 |
DNA recombination protein |
|
_____________30________________________________________________72\n_____________|_________________________________________________|\n5'-AAA...AAAUC___G_________________C______CU___GUAA___UC_______UGUCU...AGC-3'\n______________GUG_UGGAAGC______GGCG__GUCGU__GCU____UUC___UUCUCC\n______________:|:_|||||||______:||:__|||||__|||____|||___||||||\n______________UAU_ACCUUCG______UCGU__CAGCA__CGA____AAG___AAGAGG\n3'-UUU...UUCAU___G_______UUACAC____UA_________________UCC______CGCUC...GCG-5'\n_____________|_________________________________________________|\n_____________64________________________________________________20\n |
35 -- 41 |
53 -- 59 |
-30.4211 kcal/mol |
10.4952 kcal/mol |
7.99187 kcal/mol |
30 72@LB@ | |@LB@5'-AAA...AAAUC G C CU GUAA UC UGUCU...AGC-3'@LB@ GUG UGGAAGC GGCG GUCGU GCU UUC UUCUCC@LB@ :|: ||||||| :||: ||||| ||| ||| ||||||@LB@ UAU ACCUUCG UCGU CAGCA CGA AAG AAGAGG@LB@3'-UUU...UUCAU G UUACAC UA UCC CGCUC...GCG-5'@LB@ | |@LB@ 64 20@LB@@LB@@LB@Energy -11.93 kcal/mol@LB@Hybridization Energy -30.4211 kcal/mol@LB@Unfolding Energy - mRNA 10.4952 kcal/mol@LB@Unfolding Energy - sRNA 7.99187 kcal/mol@LB@@LB@Position - mRNA 31 -- 71@LB@Position - sRNA 21 -- 63@LB@Position Seed - mRNA 35 -- 41@LB@Position Seed - sRNA 53 -- 59@LB@ |
| 118 |
0.01263 |
0.3585 |
b0890 |
ftsK |
-8.12 |
0.357469 |
20 -- 46 |
38 -- 59 |
DNA translocase at septal ring sorting daughter chromsomes |
|
_____________19__________________________47\n_____________|___________________________|\n5'-ACA...UGUUA______AAGU___GCA_______C___UGGUU...UUG-3'\n______________UGGAAG____CAA___GAGUAAU_GUC\n______________||||||____|||___|||:|||_|||\n______________ACCUUC____GUU___CUCGUUA_CAG\n3'-UUU...UUAUG_____________ACA___________CACGA...GCG-5'\n_____________|___________________________|\n_____________60__________________________37\n |
36 -- 42 |
41 -- 47 |
-18.6025 kcal/mol |
7.19996 kcal/mol |
3.27871 kcal/mol |
19 47@LB@ | |@LB@5'-ACA...UGUUA AAGU GCA C UGGUU...UUG-3'@LB@ UGGAAG CAA GAGUAAU GUC@LB@ |||||| ||| |||:||| |||@LB@ ACCUUC GUU CUCGUUA CAG@LB@3'-UUU...UUAUG ACA CACGA...GCG-5'@LB@ | |@LB@ 60 37@LB@@LB@@LB@Energy -8.12 kcal/mol@LB@Hybridization Energy -18.6025 kcal/mol@LB@Unfolding Energy - mRNA 7.19996 kcal/mol@LB@Unfolding Energy - sRNA 3.27871 kcal/mol@LB@@LB@Position - mRNA 20 -- 46@LB@Position - sRNA 38 -- 59@LB@Position Seed - mRNA 36 -- 42@LB@Position Seed - sRNA 41 -- 47@LB@ |
| 28 |
0.002335 |
0.2776 |
b3248 |
yhdE |
-16.83 |
0.013392 |
101 -- 153 |
6 -- 68 |
dTTP/UTP pyrophosphatase; m(5)UTP/m(5)CTP/pseudo-UTP pyrophosphatase |
|
_____________100______________________________________________________________154\n_____________|________________________________________________________________|\n5'-UUA...ACCGG_____U__________________U_____GG_____CU______________A__________CUGAU...AGC-3'\n______________AAGUG_U_CUGG_AGUAGUGU_AG_CAAUG__GUGCU____GG____CCGUGG___UUUUCUUG\n______________||||:_|_||||_||:|:|||_||_|||||__|||||____||____|||:|:___|:|||:||\n______________UUCAU_A_GACC_UCGUUACA_UC_GUUAC__CACGA____CC____GGCGCU___AGAAGGAC\n3'-UUU...ACCGA_____U_U____U________C________AG_____AAGU__AAGA______CCC________UAGCG-5'\n_____________|________________________________________________________________|\n_____________69_______________________________________________________________5\n |
147 -- 153 |
6 -- 12 |
-47.0166 kcal/mol |
16.0597 kcal/mol |
14.1245 kcal/mol |
100 154@LB@ | |@LB@5'-UUA...ACCGG U U GG CU A CUGAU...AGC-3'@LB@ AAGUG U CUGG AGUAGUGU AG CAAUG GUGCU GG CCGUGG UUUUCUUG@LB@ ||||: | |||| ||:|:||| || ||||| ||||| || |||:|: |:|||:||@LB@ UUCAU A GACC UCGUUACA UC GUUAC CACGA CC GGCGCU AGAAGGAC@LB@3'-UUU...ACCGA U U U C AG AAGU AAGA CCC UAGCG-5'@LB@ | |@LB@ 69 5@LB@@LB@@LB@Energy -16.83 kcal/mol@LB@Hybridization Energy -47.0166 kcal/mol@LB@Unfolding Energy - mRNA 16.0597 kcal/mol@LB@Unfolding Energy - sRNA 14.1245 kcal/mol@LB@@LB@Position - mRNA 101 -- 153@LB@Position - sRNA 6 -- 68@LB@Position Seed - mRNA 147 -- 153@LB@Position Seed - sRNA 6 -- 12@LB@ |
| 131 |
0.01424 |
0.3651 |
b0058 |
rluA |
-14.42 |
0.034831 |
43 -- 63 |
40 -- 60 |
dual specificity 23S rRNA pseudouridine(746) tRNA pseudouridine(32) synthase SAM-dependent |
|
_____________42____________________64\n_____________|_____________________|\n5'-CGU...CUCGU________UC__C_U______AACCC...UGU-3'\n______________CUGGAAGC__UG_G_GCAGUG\n______________||||||||__||_|_|||:||\n______________GACCUUCG__AC_C_CGUUAC\n3'-UUU...AUUAU________UU__A_U______AGCAC...GCG-5'\n_____________|_____________________|\n_____________61____________________39\n |
44 -- 50 |
53 -- 59 |
-25.1761 kcal/mol |
7.45543 kcal/mol |
3.29985 kcal/mol |
42 64@LB@ | |@LB@5'-CGU...CUCGU UC C U AACCC...UGU-3'@LB@ CUGGAAGC UG G GCAGUG@LB@ |||||||| || | |||:||@LB@ GACCUUCG AC C CGUUAC@LB@3'-UUU...AUUAU UU A U AGCAC...GCG-5'@LB@ | |@LB@ 61 39@LB@@LB@@LB@Energy -14.42 kcal/mol@LB@Hybridization Energy -25.1761 kcal/mol@LB@Unfolding Energy - mRNA 7.45543 kcal/mol@LB@Unfolding Energy - sRNA 3.29985 kcal/mol@LB@@LB@Position - mRNA 43 -- 63@LB@Position - sRNA 40 -- 60@LB@Position Seed - mRNA 44 -- 50@LB@Position Seed - sRNA 53 -- 59@LB@ |
