| 120 |
0.0128 |
0.3585 |
b0445 |
ybaE |
-11.02 |
0.129416 |
154 -- 176 |
41 -- 63 |
putative ABC transporter periplasmic binding protein |
|
_____________153______________________177\n_____________|________________________|\n5'-CGU...GAUAU______________A____A____UAAAU...GUU-3'\n______________AUAC_GGAAGUAAU_GUGA_UAGU\n______________||||_|||||:|||_||||_:|:|\n______________UAUG_CCUUCGUUA_CACU_GUUA\n3'-UUU...UUCAU____A______________C____CAGCA...GCG-5'\n_____________|________________________|\n_____________64_______________________40\n |
159 -- 165 |
51 -- 57 |
-19.1991 kcal/mol |
4.87781 kcal/mol |
3.30177 kcal/mol |
153 177@LB@ | |@LB@5'-CGU...GAUAU A A UAAAU...GUU-3'@LB@ AUAC GGAAGUAAU GUGA UAGU@LB@ |||| |||||:||| |||| :|:|@LB@ UAUG CCUUCGUUA CACU GUUA@LB@3'-UUU...UUCAU A C CAGCA...GCG-5'@LB@ | |@LB@ 64 40@LB@@LB@@LB@Energy -11.02 kcal/mol@LB@Hybridization Energy -19.1991 kcal/mol@LB@Unfolding Energy - mRNA 4.87781 kcal/mol@LB@Unfolding Energy - sRNA 3.30177 kcal/mol@LB@@LB@Position - mRNA 154 -- 176@LB@Position - sRNA 41 -- 63@LB@Position Seed - mRNA 159 -- 165@LB@Position Seed - sRNA 51 -- 57@LB@ |
| 175 |
0.02121 |
0.4072 |
b4592 |
cbdX |
-9.01 |
0.266875 |
56 -- 82 |
33 -- 61 |
putative cytochrome bd-II oxidase subunit |
|
_____________55______________________________83\n_____________|_______________________________|\n5'-GCG...CUGAC__________UU____U______________GAUAU...CGU-3'\n______________GCUG__AGCA__AUGU_GGUAA__UCGUGCU\n______________:|||__||||__||||_:|:||__|||||||\n______________UGAC__UCGU__UACA_UCGUU__AGCACGA\n3'-UUU...CAUUA____CU__________C_____AC_______AAGUC...GCG-5'\n_____________|_______________________________|\n_____________62______________________________32\n |
76 -- 82 |
33 -- 39 |
-24.6928 kcal/mol |
8.91736 kcal/mol |
6.76812 kcal/mol |
55 83@LB@ | |@LB@5'-GCG...CUGAC UU U GAUAU...CGU-3'@LB@ GCUG AGCA AUGU GGUAA UCGUGCU@LB@ :||| |||| |||| :|:|| |||||||@LB@ UGAC UCGU UACA UCGUU AGCACGA@LB@3'-UUU...CAUUA CU C AC AAGUC...GCG-5'@LB@ | |@LB@ 62 32@LB@@LB@@LB@Energy -9.01 kcal/mol@LB@Hybridization Energy -24.6928 kcal/mol@LB@Unfolding Energy - mRNA 8.91736 kcal/mol@LB@Unfolding Energy - sRNA 6.76812 kcal/mol@LB@@LB@Position - mRNA 56 -- 82@LB@Position - sRNA 33 -- 61@LB@Position Seed - mRNA 76 -- 82@LB@Position Seed - sRNA 33 -- 39@LB@ |
| 66 |
0.005808 |
0.2905 |
b2016 |
yeeZ |
-14.47 |
0.034156 |
261 -- 292 |
51 -- 85 |
putative epimerase |
|
_____________260_________________________________293\n_____________|___________________________________|\n5'-ACC...CACUU_______GA____________C____C________AACCACAC-3'\n______________UCAGCGC__GGCUGGC_AAGU___AC_GGGAGUAA\n______________:||||:|__|||||||_||||___||_||:||:||\n______________GGUCGUG__CCGACCG_UUCA___UG_CCUUCGUU\n______3'-UUUUC_______GG_______A____UUA__A________ACACU...GCG-5'\n_____________|___________________________________|\n_____________86__________________________________50\n |
286 -- 292 |
51 -- 57 |
-40.5662 kcal/mol |
11.5945 kcal/mol |
14.5012 kcal/mol |
260 293@LB@ | |@LB@5'-ACC...CACUU GA C C AACCACAC-3'@LB@ UCAGCGC GGCUGGC AAGU AC GGGAGUAA@LB@ :||||:| ||||||| |||| || ||:||:||@LB@ GGUCGUG CCGACCG UUCA UG CCUUCGUU@LB@ 3'-UUUUC GG A UUA A ACACU...GCG-5'@LB@ | |@LB@ 86 50@LB@@LB@@LB@Energy -14.47 kcal/mol@LB@Hybridization Energy -40.5662 kcal/mol@LB@Unfolding Energy - mRNA 11.5945 kcal/mol@LB@Unfolding Energy - sRNA 14.5012 kcal/mol@LB@@LB@Position - mRNA 261 -- 292@LB@Position - sRNA 51 -- 85@LB@Position Seed - mRNA 286 -- 292@LB@Position Seed - sRNA 51 -- 57@LB@ |
| 189 |
0.02313 |
0.4113 |
b2438 |
eutK |
-12.08 |
0.086588 |
220 -- 243 |
37 -- 62 |
putative ethanol utilization carboxysome structural protein |
|
_____________219________________________244\n_____________|__________________________|\n5'-CGA...GGGAU____________AC______UG____CCGCG...GUC-3'\n______________UGCUGGAAGUGG____GGCA__GUCG\n______________|:|||||||:::____:|||__||||\n______________AUGACCUUCGUU____UCGU__CAGC\n3'-UUU...UCAUU____________ACAC____UA____ACGAA...GCG-5'\n_____________|__________________________|\n_____________63_________________________36\n |
224 -- 230 |
52 -- 58 |
-25.7957 kcal/mol |
10.4122 kcal/mol |
3.3026 kcal/mol |
219 244@LB@ | |@LB@5'-CGA...GGGAU AC UG CCGCG...GUC-3'@LB@ UGCUGGAAGUGG GGCA GUCG@LB@ |:|||||||::: :||| ||||@LB@ AUGACCUUCGUU UCGU CAGC@LB@3'-UUU...UCAUU ACAC UA ACGAA...GCG-5'@LB@ | |@LB@ 63 36@LB@@LB@@LB@Energy -12.08 kcal/mol@LB@Hybridization Energy -25.7957 kcal/mol@LB@Unfolding Energy - mRNA 10.4122 kcal/mol@LB@Unfolding Energy - sRNA 3.3026 kcal/mol@LB@@LB@Position - mRNA 220 -- 243@LB@Position - sRNA 37 -- 62@LB@Position Seed - mRNA 224 -- 230@LB@Position Seed - sRNA 52 -- 58@LB@ |
| 153 |
0.01881 |
0.4072 |
b3524 |
yhjG |
-16.11 |
0.017836 |
180 -- 208 |
42 -- 68 |
putative inner membrane-anchored periplasmic AsmA family protein |
|
_____________179____________________________209\n_____________|______________________________|\n5'-UUG...ACAGG_________GA________ACGA_______GGCAG...GAC-3'\n______________AAG_AAUAU__GGAAGCGA____UGAGCAA\n______________|||_||||:__||||||:|____|||||||\n______________UUC_UUAUG__CCUUCGUU____ACUCGUU\n3'-UUU...ACCGA___A_____A_________AC_________ACAGC...GCG-5'\n_____________|______________________________|\n_____________69_____________________________41\n |
202 -- 208 |
42 -- 48 |
-23.3114 kcal/mol |
3.89448 kcal/mol |
3.30492 kcal/mol |
179 209@LB@ | |@LB@5'-UUG...ACAGG GA ACGA GGCAG...GAC-3'@LB@ AAG AAUAU GGAAGCGA UGAGCAA@LB@ ||| ||||: ||||||:| |||||||@LB@ UUC UUAUG CCUUCGUU ACUCGUU@LB@3'-UUU...ACCGA A A AC ACAGC...GCG-5'@LB@ | |@LB@ 69 41@LB@@LB@@LB@Energy -16.11 kcal/mol@LB@Hybridization Energy -23.3114 kcal/mol@LB@Unfolding Energy - mRNA 3.89448 kcal/mol@LB@Unfolding Energy - sRNA 3.30492 kcal/mol@LB@@LB@Position - mRNA 180 -- 208@LB@Position - sRNA 42 -- 68@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 42 -- 48@LB@ |
| 62 |
0.005609 |
0.2905 |
b1132 |
hflD |
-11.66 |
0.101792 |
188 -- 207 |
42 -- 58 |
putative lysogenization regulator |
|
_____________187___________________208\n_____________|_____________________|\n5'-ACC...AACAA_________GAAC________AGAAU...CCG-3'\n______________GGAAGCAGU____GUG_GCAA\n______________|||||||:|____|||_||||\n______________CCUUCGUUA____CAC_CGUU\n3'-UUU...UAUGA________________U____ACAGC...GCG-5'\n_____________|_____________________|\n_____________59____________________41\n |
190 -- 196 |
50 -- 56 |
-19.7521 kcal/mol |
4.88534 kcal/mol |
3.2101 kcal/mol |
187 208@LB@ | |@LB@5'-ACC...AACAA GAAC AGAAU...CCG-3'@LB@ GGAAGCAGU GUG GCAA@LB@ |||||||:| ||| ||||@LB@ CCUUCGUUA CAC CGUU@LB@3'-UUU...UAUGA U ACAGC...GCG-5'@LB@ | |@LB@ 59 41@LB@@LB@@LB@Energy -11.66 kcal/mol@LB@Hybridization Energy -19.7521 kcal/mol@LB@Unfolding Energy - mRNA 4.88534 kcal/mol@LB@Unfolding Energy - sRNA 3.2101 kcal/mol@LB@@LB@Position - mRNA 188 -- 207@LB@Position - sRNA 42 -- 58@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 50 -- 56@LB@ |
| 46 |
0.004112 |
0.2905 |
b3263 |
yhdU |
-13.66 |
0.046979 |
167 -- 251 |
6 -- 86 |
putative membrane protein |
|
_____________166______________________________________________________________________________________________252\n_____________|________________________________________________________________________________________________|\n5'-GAU...UUCCU______________AAACAUGCACA____C________AUUC_C_____U__GU___________C_______CUG____________________UUUGA...CAG-3'\n______________GCCAG_ACUUGGUU___________GGCU_AGGUAAUG____G_AAGUA_UG__GGC____UCGU_GUUUUCG___UCUUCGU______UUUUCUG\n______________|||||_||::||:|___________||||_|:|||||:____|_|||:|_||__:||____||||_|:||||:___|||:||:______:||:|||\n______________CGGUC_UGGGCCGA___________CCGA_UUCAUUAU____C_UUCGU_AC__UCG____AGCA_CGAAAGU___AGAGGCG______GAAGGAC\n_______3'-UUUU_____G________________________________GAC________U__AC___UUAC____________CCA_______CUCCCA_______UAGCG-5'\n_____________|________________________________________________________________________________________________|\n_____________87_______________________________________________________________________________________________5\n |
245 -- 251 |
6 -- 12 |
-59.7696 kcal/mol |
20.3812 kcal/mol |
25.7297 kcal/mol |
166 252@LB@ | |@LB@5'-GAU...UUCCU AAACAUGCACA C AUUC C U GU C CUG UUUGA...CAG-3'@LB@ GCCAG ACUUGGUU GGCU AGGUAAUG G AAGUA UG GGC UCGU GUUUUCG UCUUCGU UUUUCUG@LB@ ||||| ||::||:| |||| |:|||||: | |||:| || :|| |||| |:||||: |||:||: :||:|||@LB@ CGGUC UGGGCCGA CCGA UUCAUUAU C UUCGU AC UCG AGCA CGAAAGU AGAGGCG GAAGGAC@LB@ 3'-UUUU G GAC U AC UUAC CCA CUCCCA UAGCG-5'@LB@ | |@LB@ 87 5@LB@@LB@@LB@Energy -13.66 kcal/mol@LB@Hybridization Energy -59.7696 kcal/mol@LB@Unfolding Energy - mRNA 20.3812 kcal/mol@LB@Unfolding Energy - sRNA 25.7297 kcal/mol@LB@@LB@Position - mRNA 167 -- 251@LB@Position - sRNA 6 -- 86@LB@Position Seed - mRNA 245 -- 251@LB@Position Seed - sRNA 6 -- 12@LB@ |
| 20 |
0.001583 |
0.2659 |
b4547 |
ypfN |
-17.32 |
0.011014 |
197 -- 242 |
38 -- 88 |
putative membrane protein UPF0370 family |
|
_____________196_________________________________________________243\n_____________|___________________________________________________|\n5'-UGA...GAAAU____AU_G______________A__U__G____UUCUG_____U_______UUUUU...AGA-3'\n______________AAGC__G_A_CUGGCUGGCUAA_UA_UG_UGGA______GUGA____UGUC\n______________||||__|_|_|:||||||||||_||_|:_||||______||||____||||\n______________UUCG__C_U_GGCCGACCGAUU_AU_AU_ACCU______CACU____ACAG\n_________3'-UU____GU_G_G____________C__U__G____UCGUUA____CGUU____CACGA...GCG-5'\n_____________|___________________________________________________|\n_____________89__________________________________________________37\n |
211 -- 217 |
67 -- 73 |
-42.3158 kcal/mol |
10.0822 kcal/mol |
14.9106 kcal/mol |
196 243@LB@ | |@LB@5'-UGA...GAAAU AU G A U G UUCUG U UUUUU...AGA-3'@LB@ AAGC G A CUGGCUGGCUAA UA UG UGGA GUGA UGUC@LB@ |||| | | |:|||||||||| || |: |||| |||| ||||@LB@ UUCG C U GGCCGACCGAUU AU AU ACCU CACU ACAG@LB@ 3'-UU GU G G C U G UCGUUA CGUU CACGA...GCG-5'@LB@ | |@LB@ 89 37@LB@@LB@@LB@Energy -17.32 kcal/mol@LB@Hybridization Energy -42.3158 kcal/mol@LB@Unfolding Energy - mRNA 10.0822 kcal/mol@LB@Unfolding Energy - sRNA 14.9106 kcal/mol@LB@@LB@Position - mRNA 197 -- 242@LB@Position - sRNA 38 -- 88@LB@Position Seed - mRNA 211 -- 217@LB@Position Seed - sRNA 67 -- 73@LB@ |
| 10 |
0.0006218 |
0.2043 |
b1423 |
ydcJ |
-15.65 |
0.021404 |
209 -- 256 |
38 -- 84 |
putative metalloenzyme |
|
_____________208__________________________________________________257\n_____________|____________________________________________________|\n5'-GAA...GCGAA_______A_______A____AUUCG___________UUUC_CA_________AGCCA...UGG-3'\n______________CAGCAUC_CGGC_GG_UGAG_______GGAA_CAGU____G__GGCAAUGUC\n______________|||||:|_||||_||_|:||_______||||_||:|____|__:||||||||\n______________GUCGUGG_GCCG_CC_AUUC_______CCUU_GUUA____C__UCGUUACAG\n_____3'-UUUUCG____________A__G____AUUAUGA____C_________AC_________CACGA...GCG-5'\n_____________|____________________________________________________|\n_____________85___________________________________________________37\n |
250 -- 256 |
38 -- 44 |
-41.5422 kcal/mol |
10.9926 kcal/mol |
14.897 kcal/mol |
208 257@LB@ | |@LB@5'-GAA...GCGAA A A AUUCG UUUC CA AGCCA...UGG-3'@LB@ CAGCAUC CGGC GG UGAG GGAA CAGU G GGCAAUGUC@LB@ |||||:| |||| || |:|| |||| ||:| | :||||||||@LB@ GUCGUGG GCCG CC AUUC CCUU GUUA C UCGUUACAG@LB@ 3'-UUUUCG A G AUUAUGA C AC CACGA...GCG-5'@LB@ | |@LB@ 85 37@LB@@LB@@LB@Energy -15.65 kcal/mol@LB@Hybridization Energy -41.5422 kcal/mol@LB@Unfolding Energy - mRNA 10.9926 kcal/mol@LB@Unfolding Energy - sRNA 14.897 kcal/mol@LB@@LB@Position - mRNA 209 -- 256@LB@Position - sRNA 38 -- 84@LB@Position Seed - mRNA 250 -- 256@LB@Position Seed - sRNA 38 -- 44@LB@ |
| 78 |
0.00737 |
0.3134 |
b2299 |
yfcD |
-10.35 |
0.165972 |
38 -- 78 |
49 -- 90 |
putative NUDIX hydrolase |
|
_____________37__________________________________________79\n_____________|___________________________________________|\n5'-AGA...AUUCC_____G____A_______GA____U_GC_______________ACGUA...AGU-3'\n______________GAAAG_CGGU_AUCCGGC__GUUA_G__AUGCUGGA__UAAUG\n______________:||||_|:|:_|:|||||__|:||_|__||:|||||__:||||\n______________UUUUC_GUCG_UGGGCCG__CGAU_C__UAUGACCU__GUUAC\n___________3'-_____G____________AC____U_AU________UC_____ACUCG...GCG-5'\n______________|__________________________________________|\n______________90_________________________________________48\n |
67 -- 73 |
56 -- 62 |
-41.1069 kcal/mol |
16.14 kcal/mol |
14.6203 kcal/mol |
37 79@LB@ | |@LB@5'-AGA...AUUCC G A GA U GC ACGUA...AGU-3'@LB@ GAAAG CGGU AUCCGGC GUUA G AUGCUGGA UAAUG@LB@ :|||| |:|: |:||||| |:|| | ||:||||| :||||@LB@ UUUUC GUCG UGGGCCG CGAU C UAUGACCU GUUAC@LB@ 3'- G AC U AU UC ACUCG...GCG-5'@LB@ | |@LB@ 90 48@LB@@LB@@LB@Energy -10.35 kcal/mol@LB@Hybridization Energy -41.1069 kcal/mol@LB@Unfolding Energy - mRNA 16.14 kcal/mol@LB@Unfolding Energy - sRNA 14.6203 kcal/mol@LB@@LB@Position - mRNA 38 -- 78@LB@Position - sRNA 49 -- 90@LB@Position Seed - mRNA 67 -- 73@LB@Position Seed - sRNA 56 -- 62@LB@ |
