| 40 |
0.003423 |
0.2776 |
b3901 |
rhaM |
-14.12 |
0.039141 |
284 -- 296 |
49 -- 61 |
L-rhamnose mutarotase |
|
_____________283___________297\n_____________|_____________|\n5'-ACG...CCAGA_____________CUGA-3'\n______________ACUGGAAGCAGUG\n______________||||||||||:||\n______________UGACCUUCGUUAC\n3'-UUU...CAUUA_____________ACUCG...GCG-5'\n_____________|_____________|\n_____________62____________48\n |
290 -- 296 |
49 -- 55 |
-21.3506 kcal/mol |
4.21776 kcal/mol |
3.00866 kcal/mol |
283 297@LB@ | |@LB@5'-ACG...CCAGA CUGA-3'@LB@ ACUGGAAGCAGUG@LB@ ||||||||||:||@LB@ UGACCUUCGUUAC@LB@3'-UUU...CAUUA ACUCG...GCG-5'@LB@ | |@LB@ 62 48@LB@@LB@@LB@Energy -14.12 kcal/mol@LB@Hybridization Energy -21.3506 kcal/mol@LB@Unfolding Energy - mRNA 4.21776 kcal/mol@LB@Unfolding Energy - sRNA 3.00866 kcal/mol@LB@@LB@Position - mRNA 284 -- 296@LB@Position - sRNA 49 -- 61@LB@Position Seed - mRNA 290 -- 296@LB@Position Seed - sRNA 49 -- 55@LB@ |
| 169 |
0.02092 |
0.4072 |
b4471 |
tdcG |
-11.09 |
0.126171 |
119 -- 152 |
36 -- 66 |
L-serine dehydratase 3 anaerobic |
|
_____________118________________________________153\n_____________|__________________________________|\n5'-AAC...AGUAC_______GUA____CUC_______GGACG_____AAGGU...UGG-3'\n______________GUAGUGC___AAGC___GUGAGCG_____GUCGU\n______________|||:|:|___||||___||||||:_____|||||\n______________CAUUAUG___UUCG___CACUCGU_____CAGCA\n3'-UUU...CGAUU_______ACC____UUA_______UA________CGAAA...GCG-5'\n_____________|__________________________________|\n_____________67_________________________________35\n |
136 -- 142 |
43 -- 49 |
-27.48 kcal/mol |
13.0871 kcal/mol |
3.30555 kcal/mol |
118 153@LB@ | |@LB@5'-AAC...AGUAC GUA CUC GGACG AAGGU...UGG-3'@LB@ GUAGUGC AAGC GUGAGCG GUCGU@LB@ |||:|:| |||| ||||||: |||||@LB@ CAUUAUG UUCG CACUCGU CAGCA@LB@3'-UUU...CGAUU ACC UUA UA CGAAA...GCG-5'@LB@ | |@LB@ 67 35@LB@@LB@@LB@Energy -11.09 kcal/mol@LB@Hybridization Energy -27.48 kcal/mol@LB@Unfolding Energy - mRNA 13.0871 kcal/mol@LB@Unfolding Energy - sRNA 3.30555 kcal/mol@LB@@LB@Position - mRNA 119 -- 152@LB@Position - sRNA 36 -- 66@LB@Position Seed - mRNA 136 -- 142@LB@Position Seed - sRNA 43 -- 49@LB@ |
| 193 |
0.02468 |
0.4226 |
b0642 |
leuS |
-10.30 |
0.169116 |
191 -- 213 |
41 -- 61 |
leucyl-tRNA synthetase |
|
_____________190_____________________214\n_____________|_______________________|\n5'-AAU...GGACC_____CU__C___CAA_______ACCGC...AGA-3'\n______________ACUGG__GC_AUG___GAGCAAU\n______________|||||__||_|||___|||||||\n______________UGACC__CG_UAC___CUCGUUA\n3'-UUU...CAUUA_____UU__U___A_________CAGCA...GCG-5'\n_____________|_______________________|\n_____________62______________________40\n |
207 -- 213 |
41 -- 47 |
-20.8037 kcal/mol |
7.20782 kcal/mol |
3.30062 kcal/mol |
190 214@LB@ | |@LB@5'-AAU...GGACC CU C CAA ACCGC...AGA-3'@LB@ ACUGG GC AUG GAGCAAU@LB@ ||||| || ||| |||||||@LB@ UGACC CG UAC CUCGUUA@LB@3'-UUU...CAUUA UU U A CAGCA...GCG-5'@LB@ | |@LB@ 62 40@LB@@LB@@LB@Energy -10.30 kcal/mol@LB@Hybridization Energy -20.8037 kcal/mol@LB@Unfolding Energy - mRNA 7.20782 kcal/mol@LB@Unfolding Energy - sRNA 3.30062 kcal/mol@LB@@LB@Position - mRNA 191 -- 213@LB@Position - sRNA 41 -- 61@LB@Position Seed - mRNA 207 -- 213@LB@Position Seed - sRNA 41 -- 47@LB@ |
| 148 |
0.01761 |
0.3998 |
b4262 |
lptG |
-10.98 |
0.131149 |
190 -- 206 |
42 -- 57 |
lipopolysaccharide export ABC permease |
|
_____________189_______________207\n_____________|_________________|\n5'-CCA...GUAAA____________U____CCUUU...UCA-3'\n______________GGAGCGGUGUGA_GCAA\n______________|:|||::|||||_||||\n______________CUUCGUUACACU_CGUU\n3'-UUU...AUGAC_________________ACAGC...GCG-5'\n_____________|_________________|\n_____________58________________41\n |
195 -- 201 |
46 -- 52 |
-21.8951 kcal/mol |
7.70229 kcal/mol |
3.20882 kcal/mol |
189 207@LB@ | |@LB@5'-CCA...GUAAA U CCUUU...UCA-3'@LB@ GGAGCGGUGUGA GCAA@LB@ |:|||::||||| ||||@LB@ CUUCGUUACACU CGUU@LB@3'-UUU...AUGAC ACAGC...GCG-5'@LB@ | |@LB@ 58 41@LB@@LB@@LB@Energy -10.98 kcal/mol@LB@Hybridization Energy -21.8951 kcal/mol@LB@Unfolding Energy - mRNA 7.70229 kcal/mol@LB@Unfolding Energy - sRNA 3.20882 kcal/mol@LB@@LB@Position - mRNA 190 -- 206@LB@Position - sRNA 42 -- 57@LB@Position Seed - mRNA 195 -- 201@LB@Position Seed - sRNA 46 -- 52@LB@ |
| 25 |
0.002073 |
0.2692 |
b3163 |
nlpI |
-16.34 |
0.016289 |
1 -- 45 |
38 -- 89 |
lipoprotein involved in osmotic sensitivity and filamentation |
|
______________1____________________________________________________46\n______________|____________________________________________________|\n___________5'-______________U___A__AUUAAA_____________C_________C__AACCU...CAU-3'\n______________AGGGCC_GUAUCCG_CUG_GC____________GAAGCGA__UGAGCAGU_UC\n______________|::|||_|:|:|||_|||_||____________|||||:|__||||||:|_||\n______________UUUCGG_CGUGGGC_GAC_CG____________CUUCGUU__ACUCGUUA_AG\n__________3'-U______U_______C______AUUCAUUAUGAC_______AC________C__CACGA...GCG-5'\n_____________|_____________________________________________________|\n_____________90____________________________________________________37\n |
36 -- 42 |
41 -- 47 |
-40.4977 kcal/mol |
9.24688 kcal/mol |
14.9106 kcal/mol |
1 46@LB@ | |@LB@ 5'- U A AUUAAA C C AACCU...CAU-3'@LB@ AGGGCC GUAUCCG CUG GC GAAGCGA UGAGCAGU UC@LB@ |::||| |:|:||| ||| || |||||:| ||||||:| ||@LB@ UUUCGG CGUGGGC GAC CG CUUCGUU ACUCGUUA AG@LB@ 3'-U U C AUUCAUUAUGAC AC C CACGA...GCG-5'@LB@ | |@LB@ 90 37@LB@@LB@@LB@Energy -16.34 kcal/mol@LB@Hybridization Energy -40.4977 kcal/mol@LB@Unfolding Energy - mRNA 9.24688 kcal/mol@LB@Unfolding Energy - sRNA 14.9106 kcal/mol@LB@@LB@Position - mRNA 1 -- 45@LB@Position - sRNA 38 -- 89@LB@Position Seed - mRNA 36 -- 42@LB@Position Seed - sRNA 41 -- 47@LB@ |
| 97 |
0.0101 |
0.3393 |
b0192 |
nlpE |
-13.07 |
0.059097 |
192 -- 230 |
40 -- 68 |
lipoprotein involved with copper homeostasis and adhesion |
|
_____________191_____________________________________231\n_____________|_______________________________________|\n5'-UCA...AAAAG___GA___GA___UGAAAA_______A____CA______GCUGU...CGC-3'\n______________AAG__AUG__UGG______AAGCGAU_GUGA__GCGAUG\n______________|||__||:__|||______||||:||_||||__||:|||\n______________UUC__UAU__ACC______UUCGUUA_CACU__CGUUAC\n3'-UUU...ACCGA___AU___G______________________________AGCAC...GCG-5'\n_____________|_______________________________________|\n_____________69______________________________________39\n |
211 -- 217 |
50 -- 56 |
-20.8621 kcal/mol |
4.48665 kcal/mol |
3.30507 kcal/mol |
191 231@LB@ | |@LB@5'-UCA...AAAAG GA GA UGAAAA A CA GCUGU...CGC-3'@LB@ AAG AUG UGG AAGCGAU GUGA GCGAUG@LB@ ||| ||: ||| ||||:|| |||| ||:|||@LB@ UUC UAU ACC UUCGUUA CACU CGUUAC@LB@3'-UUU...ACCGA AU G AGCAC...GCG-5'@LB@ | |@LB@ 69 39@LB@@LB@@LB@Energy -13.07 kcal/mol@LB@Hybridization Energy -20.8621 kcal/mol@LB@Unfolding Energy - mRNA 4.48665 kcal/mol@LB@Unfolding Energy - sRNA 3.30507 kcal/mol@LB@@LB@Position - mRNA 192 -- 230@LB@Position - sRNA 40 -- 68@LB@Position Seed - mRNA 211 -- 217@LB@Position Seed - sRNA 50 -- 56@LB@ |
| 188 |
0.02302 |
0.4113 |
b3105 |
yhaJ |
-12.66 |
0.069284 |
224 -- 245 |
40 -- 61 |
LysR family putative transcriptional regulator |
|
_____________223____________________246\n_____________|______________________|\n5'-CGG...UUAAC__________CUAC____U___GAUGC...GCG-3'\n______________GCUGGAAGCA____GGGU_AUG\n______________:|||||||||____|:|:_|||\n______________UGACCUUCGU____CUCG_UAC\n3'-UUU...CAUUA__________UACA____U___AGCAC...GCG-5'\n_____________|______________________|\n_____________62_____________________39\n |
227 -- 233 |
52 -- 58 |
-21.8067 kcal/mol |
5.84576 kcal/mol |
3.30075 kcal/mol |
223 246@LB@ | |@LB@5'-CGG...UUAAC CUAC U GAUGC...GCG-3'@LB@ GCUGGAAGCA GGGU AUG@LB@ :||||||||| |:|: |||@LB@ UGACCUUCGU CUCG UAC@LB@3'-UUU...CAUUA UACA U AGCAC...GCG-5'@LB@ | |@LB@ 62 39@LB@@LB@@LB@Energy -12.66 kcal/mol@LB@Hybridization Energy -21.8067 kcal/mol@LB@Unfolding Energy - mRNA 5.84576 kcal/mol@LB@Unfolding Energy - sRNA 3.30075 kcal/mol@LB@@LB@Position - mRNA 224 -- 245@LB@Position - sRNA 40 -- 61@LB@Position Seed - mRNA 227 -- 233@LB@Position Seed - sRNA 52 -- 58@LB@ |
| 86 |
0.008505 |
0.3323 |
b0879 |
macB |
-10.85 |
0.137944 |
147 -- 181 |
15 -- 61 |
macrolide ABC transporter peremase/ATPase |
|
_____________146_____________________________________________182\n_____________|_______________________________________________|\n5'-AAU...AAAGG___U__________________AA____________GA__G______CCAAA...CGG-3'\n______________GCU_GAAGC_____GGGCGAUG__GU_______GGU__UU_GUGAGG\n______________:||_|||||_____|:||:|||__||_______|||__|:_|:||||\n______________UGA_CUUCG_____CUCGUUAC__CA_______CCA__AG_CGCUCC\n3'-UUU...CAUUA___C_____UUACA________AG__CGAAAGU___AG__G______CAGAA...GCG-5'\n_____________|_______________________________________________|\n_____________62______________________________________________14\n |
157 -- 163 |
40 -- 46 |
-34.4359 kcal/mol |
9.61218 kcal/mol |
13.9754 kcal/mol |
146 182@LB@ | |@LB@5'-AAU...AAAGG U AA GA G CCAAA...CGG-3'@LB@ GCU GAAGC GGGCGAUG GU GGU UU GUGAGG@LB@ :|| ||||| |:||:||| || ||| |: |:||||@LB@ UGA CUUCG CUCGUUAC CA CCA AG CGCUCC@LB@3'-UUU...CAUUA C UUACA AG CGAAAGU AG G CAGAA...GCG-5'@LB@ | |@LB@ 62 14@LB@@LB@@LB@Energy -10.85 kcal/mol@LB@Hybridization Energy -34.4359 kcal/mol@LB@Unfolding Energy - mRNA 9.61218 kcal/mol@LB@Unfolding Energy - sRNA 13.9754 kcal/mol@LB@@LB@Position - mRNA 147 -- 181@LB@Position - sRNA 15 -- 61@LB@Position Seed - mRNA 157 -- 163@LB@Position Seed - sRNA 40 -- 46@LB@ |
| 64 |
0.005632 |
0.2905 |
b3005 |
exbD |
-12.96 |
0.061586 |
76 -- 96 |
37 -- 56 |
membrane spanning protein in TonB-ExbB-ExbD complex |
|
_____________75____________________97\n_____________|_____________________|\n5'-CGG...CUUUA________C____________CAGCG...UCU-3'\n______________AAGCGAUG_UGGGUGAUGUUG\n______________||||:|||_||:|::||||:|\n______________UUCGUUAC_ACUCGUUACAGC\n3'-UUU...UGACC_____________________ACGAA...GCG-5'\n_____________|_____________________|\n_____________57____________________36\n |
90 -- 96 |
37 -- 43 |
-25.0811 kcal/mol |
8.89195 kcal/mol |
3.22494 kcal/mol |
75 97@LB@ | |@LB@5'-CGG...CUUUA C CAGCG...UCU-3'@LB@ AAGCGAUG UGGGUGAUGUUG@LB@ ||||:||| ||:|::||||:|@LB@ UUCGUUAC ACUCGUUACAGC@LB@3'-UUU...UGACC ACGAA...GCG-5'@LB@ | |@LB@ 57 36@LB@@LB@@LB@Energy -12.96 kcal/mol@LB@Hybridization Energy -25.0811 kcal/mol@LB@Unfolding Energy - mRNA 8.89195 kcal/mol@LB@Unfolding Energy - sRNA 3.22494 kcal/mol@LB@@LB@Position - mRNA 76 -- 96@LB@Position - sRNA 37 -- 56@LB@Position Seed - mRNA 90 -- 96@LB@Position Seed - sRNA 37 -- 43@LB@ |
| 101 |
0.01031 |
0.3393 |
b2314 |
dedD |
-14.11 |
0.039362 |
188 -- 259 |
13 -- 86 |
membrane-anchored periplasmic protein involved in septation |
|
_____________187______________________________________________________________________________260\n_____________|________________________________________________________________________________|\n5'-UUG...UUGAC__G__G_GAAG_______________GUUUCA___U____UA_______CGA______________GG_____U______GAUUG...AUU-3'\n______________GC_AG_A____CGG_UGGC_AAGUAA______GAA_CGGU__GUGGGCA___UCGUGCU____GGU____CGC_GGGGGU\n______________||_||_|____|||_||||_||||||______|||_|::|__|||:|||___|||||||____|||____|||_|:||||\n______________CG_UC_U____GCC_ACCG_UUCAUU______CUU_GUUA__CACUCGU___AGCACGA____CCA____GCG_CUCCCA\n_______3'-UUUU__G__G_GG_____G____A______AUGAC____C_____________UAC_______AAGU___AGAG__________GAAGG...GCG-5'\n_____________|________________________________________________________________________________|\n_____________87_______________________________________________________________________________12\n |
238 -- 244 |
33 -- 39 |
-62.0732 kcal/mol |
22.3094 kcal/mol |
25.6538 kcal/mol |
187 260@LB@ | |@LB@5'-UUG...UUGAC G G GAAG GUUUCA U UA CGA GG U GAUUG...AUU-3'@LB@ GC AG A CGG UGGC AAGUAA GAA CGGU GUGGGCA UCGUGCU GGU CGC GGGGGU@LB@ || || | ||| |||| |||||| ||| |::| |||:||| ||||||| ||| ||| |:||||@LB@ CG UC U GCC ACCG UUCAUU CUU GUUA CACUCGU AGCACGA CCA GCG CUCCCA@LB@ 3'-UUUU G G GG G A AUGAC C UAC AAGU AGAG GAAGG...GCG-5'@LB@ | |@LB@ 87 12@LB@@LB@@LB@Energy -14.11 kcal/mol@LB@Hybridization Energy -62.0732 kcal/mol@LB@Unfolding Energy - mRNA 22.3094 kcal/mol@LB@Unfolding Energy - sRNA 25.6538 kcal/mol@LB@@LB@Position - mRNA 188 -- 259@LB@Position - sRNA 13 -- 86@LB@Position Seed - mRNA 238 -- 244@LB@Position Seed - sRNA 33 -- 39@LB@ |
