| 68 |
0.00588 |
0.2905 |
b4222 |
ytfP |
-12.04 |
0.087961 |
130 -- 151 |
48 -- 68 |
GGCT-like protein |
|
_____________129____________________152\n_____________|______________________|\n5'-ACC...UGCCU___CU___U________C____CUGGU...ACC-3'\n______________AAG__AUA_CUGGAAGC_GUGU\n______________|||__|||_||||||||_:|||\n______________UUC__UAU_GACCUUCG_UACA\n3'-UUU...ACCGA___AU____________U____CUCGU...GCG-5'\n_____________|______________________|\n_____________69_____________________47\n |
140 -- 146 |
53 -- 59 |
-18.8807 kcal/mol |
3.81035 kcal/mol |
3.03052 kcal/mol |
129 152@LB@ | |@LB@5'-ACC...UGCCU CU U C CUGGU...ACC-3'@LB@ AAG AUA CUGGAAGC GUGU@LB@ ||| ||| |||||||| :|||@LB@ UUC UAU GACCUUCG UACA@LB@3'-UUU...ACCGA AU U CUCGU...GCG-5'@LB@ | |@LB@ 69 47@LB@@LB@@LB@Energy -12.04 kcal/mol@LB@Hybridization Energy -18.8807 kcal/mol@LB@Unfolding Energy - mRNA 3.81035 kcal/mol@LB@Unfolding Energy - sRNA 3.03052 kcal/mol@LB@@LB@Position - mRNA 130 -- 151@LB@Position - sRNA 48 -- 68@LB@Position Seed - mRNA 140 -- 146@LB@Position Seed - sRNA 53 -- 59@LB@ |
| 63 |
0.005616 |
0.2905 |
b3261 |
fis |
-12.93 |
0.062484 |
136 -- 161 |
37 -- 61 |
global DNA-binding transcriptional dual regulator |
|
_____________135________________________162\n_____________|__________________________|\n5'-GGA...GAACA__________U__GA____UACU___AAAAU...AGG-3'\n______________GCUGGAGGCG_UG__GGCA____UCG\n______________:|||||:||:_||__:|||____|||\n______________UGACCUUCGU_AC__UCGU____AGC\n3'-UUU...CAUUA__________U__AC____UAC____ACGAA...GCG-5'\n_____________|__________________________|\n_____________62_________________________36\n |
139 -- 145 |
52 -- 58 |
-26.9705 kcal/mol |
10.742 kcal/mol |
3.30158 kcal/mol |
135 162@LB@ | |@LB@5'-GGA...GAACA U GA UACU AAAAU...AGG-3'@LB@ GCUGGAGGCG UG GGCA UCG@LB@ :|||||:||: || :||| |||@LB@ UGACCUUCGU AC UCGU AGC@LB@3'-UUU...CAUUA U AC UAC ACGAA...GCG-5'@LB@ | |@LB@ 62 36@LB@@LB@@LB@Energy -12.93 kcal/mol@LB@Hybridization Energy -26.9705 kcal/mol@LB@Unfolding Energy - mRNA 10.742 kcal/mol@LB@Unfolding Energy - sRNA 3.30158 kcal/mol@LB@@LB@Position - mRNA 136 -- 161@LB@Position - sRNA 37 -- 61@LB@Position Seed - mRNA 139 -- 145@LB@Position Seed - sRNA 52 -- 58@LB@ |
| 145 |
0.01736 |
0.3998 |
b1607 |
ydgC |
-14.56 |
0.032924 |
216 -- 264 |
42 -- 89 |
GlpM family inner membrane protein |
|
_____________215__________________________________________________265\n_____________|____________________________________________________|\n5'-AUG...UAAUC________________GC______________UU__U_______UUU_____AAACG...CAC-3'\n______________AAAGCC_GCGCUCGGU__GCU_GGUAGUGCUG__GA__UGGUGU___AGCAA\n______________||||||_||:|:|||:__|||_:|||:|:|||__||__:::|||___|||||\n______________UUUCGG_CGUGGGCCG__CGA_UCAUUAUGAC__CU__GUUACA___UCGUU\n__________3'-U______U_________AC___U______________UC______C_______ACAGC...GCG-5'\n_____________|____________________________________________________|\n_____________90___________________________________________________41\n |
239 -- 245 |
58 -- 64 |
-48.2837 kcal/mol |
18.8097 kcal/mol |
14.9103 kcal/mol |
215 265@LB@ | |@LB@5'-AUG...UAAUC GC UU U UUU AAACG...CAC-3'@LB@ AAAGCC GCGCUCGGU GCU GGUAGUGCUG GA UGGUGU AGCAA@LB@ |||||| ||:|:|||: ||| :|||:|:||| || :::||| |||||@LB@ UUUCGG CGUGGGCCG CGA UCAUUAUGAC CU GUUACA UCGUU@LB@ 3'-U U AC U UC C ACAGC...GCG-5'@LB@ | |@LB@ 90 41@LB@@LB@@LB@Energy -14.56 kcal/mol@LB@Hybridization Energy -48.2837 kcal/mol@LB@Unfolding Energy - mRNA 18.8097 kcal/mol@LB@Unfolding Energy - sRNA 14.9103 kcal/mol@LB@@LB@Position - mRNA 216 -- 264@LB@Position - sRNA 42 -- 89@LB@Position Seed - mRNA 239 -- 245@LB@Position Seed - sRNA 58 -- 64@LB@ |
| 82 |
0.008223 |
0.3318 |
b1654 |
grxD |
-11.69 |
0.100410 |
189 -- 207 |
43 -- 58 |
glutaredoxin-4 |
|
_____________188_________________208\n_____________|___________________|\n5'-AAA...UUUGA________GACAA______CCACU...CUG-3'\n______________GGAAGCAA_____UGAGCA\n______________||||||||_____||||||\n______________CCUUCGUU_____ACUCGU\n3'-UUU...UAUGA________AC_________UACAG...GCG-5'\n_____________|___________________|\n_____________59__________________42\n |
190 -- 196 |
51 -- 57 |
-19.1647 kcal/mol |
4.26252 kcal/mol |
3.20949 kcal/mol |
188 208@LB@ | |@LB@5'-AAA...UUUGA GACAA CCACU...CUG-3'@LB@ GGAAGCAA UGAGCA@LB@ |||||||| ||||||@LB@ CCUUCGUU ACUCGU@LB@3'-UUU...UAUGA AC UACAG...GCG-5'@LB@ | |@LB@ 59 42@LB@@LB@@LB@Energy -11.69 kcal/mol@LB@Hybridization Energy -19.1647 kcal/mol@LB@Unfolding Energy - mRNA 4.26252 kcal/mol@LB@Unfolding Energy - sRNA 3.20949 kcal/mol@LB@@LB@Position - mRNA 189 -- 207@LB@Position - sRNA 43 -- 58@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 51 -- 57@LB@ |
| 197 |
0.02501 |
0.4226 |
b2947 |
gshB |
-10.62 |
0.150229 |
274 -- 293 |
36 -- 62 |
glutathione synthetase |
|
_____________273_________________________294\n_____________|___________________________|\n5'-UGC...UAUGU_____________________C_____GGUUACG-3'\n______________UGCUGGAAGCA_______CAG_GUCGU\n______________|:|||||||||_______||:_|||||\n______________AUGACCUUCGU_______GUU_CAGCA\n3'-UUU...UCAUU___________UACACUC___A_____CGAAA...GCG-5'\n_____________|___________________________|\n_____________63__________________________35\n |
278 -- 284 |
52 -- 58 |
-23.3786 kcal/mol |
9.45801 kcal/mol |
3.30265 kcal/mol |
273 294@LB@ | |@LB@5'-UGC...UAUGU C GGUUACG-3'@LB@ UGCUGGAAGCA CAG GUCGU@LB@ |:||||||||| ||: |||||@LB@ AUGACCUUCGU GUU CAGCA@LB@3'-UUU...UCAUU UACACUC A CGAAA...GCG-5'@LB@ | |@LB@ 63 35@LB@@LB@@LB@Energy -10.62 kcal/mol@LB@Hybridization Energy -23.3786 kcal/mol@LB@Unfolding Energy - mRNA 9.45801 kcal/mol@LB@Unfolding Energy - sRNA 3.30265 kcal/mol@LB@@LB@Position - mRNA 274 -- 293@LB@Position - sRNA 36 -- 62@LB@Position Seed - mRNA 278 -- 284@LB@Position Seed - sRNA 52 -- 58@LB@ |
| 21 |
0.001761 |
0.2682 |
b2988 |
gss |
-16.20 |
0.017239 |
12 -- 42 |
38 -- 68 |
glutathionylspermidine amidase and glutathionylspermidine synthetase |
|
_____________11________________________________43\n_____________|_________________________________|\n5'-AGU...CUUCU________G__UU____________________ACUUG...UCG-3'\n______________GAGUGGUA_UG__GAAGCAGUGU_AGCAG_GUC\n______________:|||::||_||__||||||:|||_||||:_|||\n______________UUCAUUAU_AC__CUUCGUUACA_UCGUU_CAG\n3'-UUU...ACCGA________G______________C_____A___CACGA...GCG-5'\n_____________|_________________________________|\n_____________69________________________________37\n |
28 -- 34 |
48 -- 54 |
-32.4779 kcal/mol |
12.9749 kcal/mol |
3.30528 kcal/mol |
11 43@LB@ | |@LB@5'-AGU...CUUCU G UU ACUUG...UCG-3'@LB@ GAGUGGUA UG GAAGCAGUGU AGCAG GUC@LB@ :|||::|| || ||||||:||| ||||: |||@LB@ UUCAUUAU AC CUUCGUUACA UCGUU CAG@LB@3'-UUU...ACCGA G C A CACGA...GCG-5'@LB@ | |@LB@ 69 37@LB@@LB@@LB@Energy -16.20 kcal/mol@LB@Hybridization Energy -32.4779 kcal/mol@LB@Unfolding Energy - mRNA 12.9749 kcal/mol@LB@Unfolding Energy - sRNA 3.30528 kcal/mol@LB@@LB@Position - mRNA 12 -- 42@LB@Position - sRNA 38 -- 68@LB@Position Seed - mRNA 28 -- 34@LB@Position Seed - sRNA 48 -- 54@LB@ |
| 55 |
0.005153 |
0.2905 |
b2727 |
hypB |
-14.04 |
0.040392 |
194 -- 204 |
39 -- 49 |
GTP hydrolase involved in nickel liganding into hydrogenases |
|
_____________193_________205\n_____________|___________|\n5'-GCC...CAGGA___________GUACA...CGG-3'\n______________GUGAGCGAUGU\n______________||||||:||||\n______________CACUCGUUACA\n3'-UUU...CGUUA___________GCACG...GCG-5'\n_____________|___________|\n_____________50__________38\n |
198 -- 204 |
39 -- 45 |
-18.0568 kcal/mol |
2.85856 kcal/mol |
1.15413 kcal/mol |
193 205@LB@ | |@LB@5'-GCC...CAGGA GUACA...CGG-3'@LB@ GUGAGCGAUGU@LB@ ||||||:||||@LB@ CACUCGUUACA@LB@3'-UUU...CGUUA GCACG...GCG-5'@LB@ | |@LB@ 50 38@LB@@LB@@LB@Energy -14.04 kcal/mol@LB@Hybridization Energy -18.0568 kcal/mol@LB@Unfolding Energy - mRNA 2.85856 kcal/mol@LB@Unfolding Energy - sRNA 1.15413 kcal/mol@LB@@LB@Position - mRNA 194 -- 204@LB@Position - sRNA 39 -- 49@LB@Position Seed - mRNA 198 -- 204@LB@Position Seed - sRNA 39 -- 45@LB@ |
| 29 |
0.002852 |
0.2776 |
b3779 |
gpp |
-14.27 |
0.036904 |
25 -- 63 |
25 -- 66 |
guanosine pentaphosphatase/exopolyphosphatase |
|
_____________24__________________________________________64\n_____________|___________________________________________|\n5'-GCC...UCCGC__C_______C___UCC___C_____C_______G________AAAUA...UGA-3'\n______________GU_GUACUGG__GC_____G_GUAAU_GUCGU_C_UUCAGGUU\n______________||_:||||||__||_____|_|:|||_|||||_|_||||||||\n______________CA_UAUGACC__CG_____C_CGUUA_CAGCA_G_AAGUCCAA\n3'-UUU...CGAUU__U_______UU__UUACA_U___________C_A________GAGGC...GCG-5'\n_____________|___________________________________________|\n_____________67__________________________________________24\n |
57 -- 63 |
25 -- 31 |
-32.1436 kcal/mol |
9.87719 kcal/mol |
7.99254 kcal/mol |
24 64@LB@ | |@LB@5'-GCC...UCCGC C C UCC C C G AAAUA...UGA-3'@LB@ GU GUACUGG GC G GUAAU GUCGU C UUCAGGUU@LB@ || :|||||| || | |:||| ||||| | ||||||||@LB@ CA UAUGACC CG C CGUUA CAGCA G AAGUCCAA@LB@3'-UUU...CGAUU U UU UUACA U C A GAGGC...GCG-5'@LB@ | |@LB@ 67 24@LB@@LB@@LB@Energy -14.27 kcal/mol@LB@Hybridization Energy -32.1436 kcal/mol@LB@Unfolding Energy - mRNA 9.87719 kcal/mol@LB@Unfolding Energy - sRNA 7.99254 kcal/mol@LB@@LB@Position - mRNA 25 -- 63@LB@Position - sRNA 25 -- 66@LB@Position Seed - mRNA 57 -- 63@LB@Position Seed - sRNA 25 -- 31@LB@ |
| 121 |
0.01302 |
0.3615 |
b0966 |
hspQ |
-14.11 |
0.039362 |
113 -- 134 |
1 -- 23 |
heat shock protein involved in degradation of mutant DnaA; hemimethylated oriC DNA-binding protein |
|
_____________112_____________________135\n_____________|_______________________|\n5'-AGA...CUAUA____AA_______G_________GUCAU...CUG-3'\n______________UCUG__AGGGUUU_CCUG_UCGC\n______________||:|__|||||:|_||||_||||\n______________AGGC__UCCCAGA_GGAC_AGCG\n3'-UUU...CCAAG____GC_______A____U____-5'\n_____________|______________________|\n_____________24_____________________1\n |
119 -- 125 |
11 -- 17 |
-28.2829 kcal/mol |
6.57487 kcal/mol |
7.59819 kcal/mol |
112 135@LB@ | |@LB@5'-AGA...CUAUA AA G GUCAU...CUG-3'@LB@ UCUG AGGGUUU CCUG UCGC@LB@ ||:| |||||:| |||| ||||@LB@ AGGC UCCCAGA GGAC AGCG@LB@3'-UUU...CCAAG GC A U -5'@LB@ | |@LB@ 24 1@LB@@LB@@LB@Energy -14.11 kcal/mol@LB@Hybridization Energy -28.2829 kcal/mol@LB@Unfolding Energy - mRNA 6.57487 kcal/mol@LB@Unfolding Energy - sRNA 7.59819 kcal/mol@LB@@LB@Position - mRNA 113 -- 134@LB@Position - sRNA 1 -- 23@LB@Position Seed - mRNA 119 -- 125@LB@Position Seed - sRNA 11 -- 17@LB@ |
| 117 |
0.0126 |
0.3585 |
b2200 |
ccmB |
-15.87 |
0.019639 |
270 -- 292 |
1 -- 22 |
heme export ABC transporter permease |
|
_____________269_____________________293\n_____________|_______________________|\n5'-CGU...CCAAC____U_U__U_____________AAUUACCC-3'\n______________CCGC_G_GG_UCUUCCUGAUUGU\n______________||||_|_||_||||||||||:|:\n______________GGCG_C_CC_AGAAGGACUAGCG\n3'-UUU...CAAGA______U__C_____________-5'\n_____________|______________________|\n_____________23_____________________1\n |
286 -- 292 |
1 -- 7 |
-31.2771 kcal/mol |
7.85543 kcal/mol |
7.55214 kcal/mol |
269 293@LB@ | |@LB@5'-CGU...CCAAC U U U AAUUACCC-3'@LB@ CCGC G GG UCUUCCUGAUUGU@LB@ |||| | || ||||||||||:|:@LB@ GGCG C CC AGAAGGACUAGCG@LB@3'-UUU...CAAGA U C -5'@LB@ | |@LB@ 23 1@LB@@LB@@LB@Energy -15.87 kcal/mol@LB@Hybridization Energy -31.2771 kcal/mol@LB@Unfolding Energy - mRNA 7.85543 kcal/mol@LB@Unfolding Energy - sRNA 7.55214 kcal/mol@LB@@LB@Position - mRNA 270 -- 292@LB@Position - sRNA 1 -- 22@LB@Position Seed - mRNA 286 -- 292@LB@Position Seed - sRNA 1 -- 7@LB@ |
