| 83 |
0.008249 |
0.3318 |
b0183 |
rnhB |
-13.04 |
0.059790 |
42 -- 55 |
44 -- 58 |
ribonuclease HII degrades RNA of DNA-RNA hybrids |
|
_____________41______________56\n_____________|_______________|\n5'-AAU...UUGCA_______________CGCAA...UCC-3'\n______________GGAAG_AGUGUGAGC\n______________|||||_|:|||||||\n______________CCUUC_UUACACUCG\n3'-UUU...UAUGA_____G_________UUACA...GCG-5'\n_____________|_______________|\n_____________59______________43\n |
49 -- 55 |
44 -- 50 |
-21.6429 kcal/mol |
5.39444 kcal/mol |
3.20799 kcal/mol |
41 56@LB@ | |@LB@5'-AAU...UUGCA CGCAA...UCC-3'@LB@ GGAAG AGUGUGAGC@LB@ ||||| |:|||||||@LB@ CCUUC UUACACUCG@LB@3'-UUU...UAUGA G UUACA...GCG-5'@LB@ | |@LB@ 59 43@LB@@LB@@LB@Energy -13.04 kcal/mol@LB@Hybridization Energy -21.6429 kcal/mol@LB@Unfolding Energy - mRNA 5.39444 kcal/mol@LB@Unfolding Energy - sRNA 3.20799 kcal/mol@LB@@LB@Position - mRNA 42 -- 55@LB@Position - sRNA 44 -- 58@LB@Position Seed - mRNA 49 -- 55@LB@Position Seed - sRNA 44 -- 50@LB@ |
| 111 |
0.01184 |
0.3513 |
b0528 |
ybcJ |
-13.49 |
0.050278 |
257 -- 272 |
44 -- 61 |
ribosome-associated protein; putative RNA-binding protein |
|
_____________256________________273\n_____________|__________________|\n5'-AGG...CUGAA________GC________GAAAG...CGA-3'\n______________ACUGGAAG___UG_GAGC\n______________||||||||___||_||||\n______________UGACCUUC___AC_CUCG\n3'-UUU...CAUUA________GUU__A____UUACA...GCG-5'\n_____________|__________________|\n_____________62_________________43\n |
258 -- 264 |
54 -- 60 |
-19.8617 kcal/mol |
3.07726 kcal/mol |
3.29941 kcal/mol |
256 273@LB@ | |@LB@5'-AGG...CUGAA GC GAAAG...CGA-3'@LB@ ACUGGAAG UG GAGC@LB@ |||||||| || ||||@LB@ UGACCUUC AC CUCG@LB@3'-UUU...CAUUA GUU A UUACA...GCG-5'@LB@ | |@LB@ 62 43@LB@@LB@@LB@Energy -13.49 kcal/mol@LB@Hybridization Energy -19.8617 kcal/mol@LB@Unfolding Energy - mRNA 3.07726 kcal/mol@LB@Unfolding Energy - sRNA 3.29941 kcal/mol@LB@@LB@Position - mRNA 257 -- 272@LB@Position - sRNA 44 -- 61@LB@Position Seed - mRNA 258 -- 264@LB@Position Seed - sRNA 54 -- 60@LB@ |
| 164 |
0.02028 |
0.4072 |
b3295 |
rpoA |
-11.98 |
0.089862 |
19 -- 43 |
66 -- 90 |
RNA polymerase alpha subunit |
|
_____________18_________________________44\n_____________|__________________________|\n5'-GAA...CGCGU__________U__G_A__________CAGCG...GUG-3'\n______________GAAAGCC_GC_CU_G_GCUGGCUGAG\n______________:||||||_||_|:_|_|||||||:||\n______________UUUUCGG_CG_GG_C_CGACCGAUUC\n___________3'-_______U__U__G____________AUUAU...GCG-5'\n______________|_________________________|\n______________90________________________65\n |
37 -- 43 |
66 -- 72 |
-33.5627 kcal/mol |
9.82436 kcal/mol |
11.7544 kcal/mol |
18 44@LB@ | |@LB@5'-GAA...CGCGU U G A CAGCG...GUG-3'@LB@ GAAAGCC GC CU G GCUGGCUGAG@LB@ :|||||| || |: | |||||||:||@LB@ UUUUCGG CG GG C CGACCGAUUC@LB@ 3'- U U G AUUAU...GCG-5'@LB@ | |@LB@ 90 65@LB@@LB@@LB@Energy -11.98 kcal/mol@LB@Hybridization Energy -33.5627 kcal/mol@LB@Unfolding Energy - mRNA 9.82436 kcal/mol@LB@Unfolding Energy - sRNA 11.7544 kcal/mol@LB@@LB@Position - mRNA 19 -- 43@LB@Position - sRNA 66 -- 90@LB@Position Seed - mRNA 37 -- 43@LB@Position Seed - sRNA 66 -- 72@LB@ |
| 51 |
0.00476 |
0.2905 |
b3607 |
cysE |
-15.05 |
0.027128 |
184 -- 209 |
34 -- 63 |
serine acetyltransferase |
|
_____________183_____________________________210\n_____________|_______________________________|\n5'-CGG...AUCUC__CG__U________________________GAAGA...CGA-3'\n______________AU__UG_GGAGUA_____AGCAAUGUCGUGU\n______________||__||_|:||:|_____||||||||||||:\n______________UA__AC_CUUCGU_____UCGUUACAGCACG\n3'-UUU...UUCAU__UG_________UACAC_____________AAAGU...GCG-5'\n_____________|_______________________________|\n_____________64______________________________33\n |
203 -- 209 |
34 -- 40 |
-26.8035 kcal/mol |
4.97985 kcal/mol |
6.76935 kcal/mol |
183 210@LB@ | |@LB@5'-CGG...AUCUC CG U GAAGA...CGA-3'@LB@ AU UG GGAGUA AGCAAUGUCGUGU@LB@ || || |:||:| ||||||||||||:@LB@ UA AC CUUCGU UCGUUACAGCACG@LB@3'-UUU...UUCAU UG UACAC AAAGU...GCG-5'@LB@ | |@LB@ 64 33@LB@@LB@@LB@Energy -15.05 kcal/mol@LB@Hybridization Energy -26.8035 kcal/mol@LB@Unfolding Energy - mRNA 4.97985 kcal/mol@LB@Unfolding Energy - sRNA 6.76935 kcal/mol@LB@@LB@Position - mRNA 184 -- 209@LB@Position - sRNA 34 -- 63@LB@Position Seed - mRNA 203 -- 209@LB@Position Seed - sRNA 34 -- 40@LB@ |
| 24 |
0.001915 |
0.2682 |
b0893 |
serS |
-16.11 |
0.017871 |
52 -- 73 |
67 -- 90 |
seryl-tRNA synthetase |
|
_____________51_______________________74\n_____________|________________________|\n5'-AAA...UGGCG________________________ACAGG...UUG-3'\n______________AAAAGCU__CGCCUGGCUGGCUGA\n______________||||||:__|:||:||||||||:|\n______________UUUUCGG__GUGGGCCGACCGAUU\n___________3'-_______UC_______________CAUUA...GCG-5'\n______________|_______________________|\n______________90______________________66\n |
67 -- 73 |
67 -- 73 |
-35.7282 kcal/mol |
7.88567 kcal/mol |
11.7355 kcal/mol |
51 74@LB@ | |@LB@5'-AAA...UGGCG ACAGG...UUG-3'@LB@ AAAAGCU CGCCUGGCUGGCUGA@LB@ ||||||: |:||:||||||||:|@LB@ UUUUCGG GUGGGCCGACCGAUU@LB@ 3'- UC CAUUA...GCG-5'@LB@ | |@LB@ 90 66@LB@@LB@@LB@Energy -16.11 kcal/mol@LB@Hybridization Energy -35.7282 kcal/mol@LB@Unfolding Energy - mRNA 7.88567 kcal/mol@LB@Unfolding Energy - sRNA 11.7355 kcal/mol@LB@@LB@Position - mRNA 52 -- 73@LB@Position - sRNA 67 -- 90@LB@Position Seed - mRNA 67 -- 73@LB@Position Seed - sRNA 67 -- 73@LB@ |
| 165 |
0.02037 |
0.4072 |
b1981 |
shiA |
-10.79 |
0.140980 |
142 -- 153 |
44 -- 55 |
shikimate transporter |
|
_____________141__________154\n_____________|____________|\n5'-CUG...UCGAC____________UACCU...UCG-3'\n______________GGCAAUGUGAGU\n______________:||||||||||:\n______________UCGUUACACUCG\n3'-UUU...GACCU____________UUACA...GCG-5'\n_____________|____________|\n_____________56___________43\n |
147 -- 153 |
44 -- 50 |
-18.9093 kcal/mol |
4.9192 kcal/mol |
3.20048 kcal/mol |
141 154@LB@ | |@LB@5'-CUG...UCGAC UACCU...UCG-3'@LB@ GGCAAUGUGAGU@LB@ :||||||||||:@LB@ UCGUUACACUCG@LB@3'-UUU...GACCU UUACA...GCG-5'@LB@ | |@LB@ 56 43@LB@@LB@@LB@Energy -10.79 kcal/mol@LB@Hybridization Energy -18.9093 kcal/mol@LB@Unfolding Energy - mRNA 4.9192 kcal/mol@LB@Unfolding Energy - sRNA 3.20048 kcal/mol@LB@@LB@Position - mRNA 142 -- 153@LB@Position - sRNA 44 -- 55@LB@Position Seed - mRNA 147 -- 153@LB@Position Seed - sRNA 44 -- 50@LB@ |
| 23 |
0.001852 |
0.2682 |
b4059 |
ssb |
-13.81 |
0.044308 |
47 -- 78 |
34 -- 64 |
single-stranded DNA-binding protein |
|
_____________46_______________________________79\n_____________|________________________________|\n5'-AUC...UAUAC__________U___UUACCC_G__________AACAA...UUA-3'\n______________AGUAUUGGAA_GCA______G_AGUGUUGUGU\n______________|:||:|||||_|||______|_|:|||:|||:\n______________UUAUGACCUU_CGU______C_UUACAGCACG\n3'-UUU...AUUCA______________UACACU_G__________AAAGU...GCG-5'\n_____________|________________________________|\n_____________65_______________________________33\n |
72 -- 78 |
34 -- 40 |
-28.8532 kcal/mol |
8.27543 kcal/mol |
6.76952 kcal/mol |
46 79@LB@ | |@LB@5'-AUC...UAUAC U UUACCC G AACAA...UUA-3'@LB@ AGUAUUGGAA GCA G AGUGUUGUGU@LB@ |:||:||||| ||| | |:|||:|||:@LB@ UUAUGACCUU CGU C UUACAGCACG@LB@3'-UUU...AUUCA UACACU G AAAGU...GCG-5'@LB@ | |@LB@ 65 33@LB@@LB@@LB@Energy -13.81 kcal/mol@LB@Hybridization Energy -28.8532 kcal/mol@LB@Unfolding Energy - mRNA 8.27543 kcal/mol@LB@Unfolding Energy - sRNA 6.76952 kcal/mol@LB@@LB@Position - mRNA 47 -- 78@LB@Position - sRNA 34 -- 64@LB@Position Seed - mRNA 72 -- 78@LB@Position Seed - sRNA 34 -- 40@LB@ |
| 92 |
0.009626 |
0.3393 |
b3811 |
xerC |
-15.13 |
0.026359 |
57 -- 92 |
33 -- 64 |
site-specific tyrosine recombinase |
|
_____________56___________________________________93\n_____________|____________________________________|\n5'-CCA...AUGUC______G__________C___UUUG___________GUUUA...UUG-3'\n______________GAUGCU_GGAAGCGAUG_UGA____GGUGUCGUGCU\n______________:||:||_||||||:|||_|||____::|||||||||\n______________UUAUGA_CCUUCGUUAC_ACU____UUACAGCACGA\n3'-UUU...AUUCA_____________________CG_____________AAGUC...GCG-5'\n_____________|____________________________________|\n_____________65___________________________________32\n |
83 -- 89 |
36 -- 42 |
-41.1335 kcal/mol |
19.2369 kcal/mol |
6.76965 kcal/mol |
56 93@LB@ | |@LB@5'-CCA...AUGUC G C UUUG GUUUA...UUG-3'@LB@ GAUGCU GGAAGCGAUG UGA GGUGUCGUGCU@LB@ :||:|| ||||||:||| ||| ::|||||||||@LB@ UUAUGA CCUUCGUUAC ACU UUACAGCACGA@LB@3'-UUU...AUUCA CG AAGUC...GCG-5'@LB@ | |@LB@ 65 32@LB@@LB@@LB@Energy -15.13 kcal/mol@LB@Hybridization Energy -41.1335 kcal/mol@LB@Unfolding Energy - mRNA 19.2369 kcal/mol@LB@Unfolding Energy - sRNA 6.76965 kcal/mol@LB@@LB@Position - mRNA 57 -- 92@LB@Position - sRNA 33 -- 64@LB@Position Seed - mRNA 83 -- 89@LB@Position Seed - sRNA 36 -- 42@LB@ |
| 43 |
0.003552 |
0.2776 |
b3453 |
ugpB |
-15.55 |
0.022327 |
231 -- 272 |
40 -- 85 |
sn-glycerol-3-phosphate ABC transporter periplasmic binding protein |
|
_____________230______________________________________________273\n_____________|________________________________________________|\n5'-UUC...CAGCA___________A_____GU_______G_____U___CA__________ACGAC...UGG-3'\n______________CUGGCGCUCGG_CUGGC____UAAUG__GGAA_GCA_____GGCAGUG\n______________|::||:|:|||_|||||____||||:__||||_|||_____:|||:||\n______________GGUCGUGGGCC_GACCG____AUUAU__CCUU_CGU_____UCGUUAC\n______3'-UUUUC_________________AUUC_____GA________UACAC_______AGCAC...GCG-5'\n_____________|________________________________________________|\n_____________86_______________________________________________39\n |
266 -- 272 |
40 -- 46 |
-44.9281 kcal/mol |
14.4718 kcal/mol |
14.9103 kcal/mol |
230 273@LB@ | |@LB@5'-UUC...CAGCA A GU G U CA ACGAC...UGG-3'@LB@ CUGGCGCUCGG CUGGC UAAUG GGAA GCA GGCAGUG@LB@ |::||:|:||| ||||| ||||: |||| ||| :|||:||@LB@ GGUCGUGGGCC GACCG AUUAU CCUU CGU UCGUUAC@LB@ 3'-UUUUC AUUC GA UACAC AGCAC...GCG-5'@LB@ | |@LB@ 86 39@LB@@LB@@LB@Energy -15.55 kcal/mol@LB@Hybridization Energy -44.9281 kcal/mol@LB@Unfolding Energy - mRNA 14.4718 kcal/mol@LB@Unfolding Energy - sRNA 14.9103 kcal/mol@LB@@LB@Position - mRNA 231 -- 272@LB@Position - sRNA 40 -- 85@LB@Position Seed - mRNA 266 -- 272@LB@Position Seed - sRNA 40 -- 46@LB@ |
| 114 |
0.01202 |
0.3513 |
b4348 |
hsdS |
-14.85 |
0.029459 |
128 -- 148 |
40 -- 66 |
specificity determinant for hsdM and hsdR |
|
_____________127_________________________149\n_____________|___________________________|\n5'-CUG...GAUGC___________________________AGGCC...UAA-3'\n______________GUGA_ACUGGGGGC_____GAGCGAUG\n______________||:|_|||||::||_____||||:|||\n______________CAUU_UGACCUUCG_____CUCGUUAC\n3'-UUU...CGAUU____A_________UUACA________AGCAC...GCG-5'\n_____________|___________________________|\n_____________67__________________________39\n |
142 -- 148 |
40 -- 46 |
-25.5951 kcal/mol |
7.44461 kcal/mol |
3.30497 kcal/mol |
127 149@LB@ | |@LB@5'-CUG...GAUGC AGGCC...UAA-3'@LB@ GUGA ACUGGGGGC GAGCGAUG@LB@ ||:| |||||::|| ||||:|||@LB@ CAUU UGACCUUCG CUCGUUAC@LB@3'-UUU...CGAUU A UUACA AGCAC...GCG-5'@LB@ | |@LB@ 67 39@LB@@LB@@LB@Energy -14.85 kcal/mol@LB@Hybridization Energy -25.5951 kcal/mol@LB@Unfolding Energy - mRNA 7.44461 kcal/mol@LB@Unfolding Energy - sRNA 3.30497 kcal/mol@LB@@LB@Position - mRNA 128 -- 148@LB@Position - sRNA 40 -- 66@LB@Position Seed - mRNA 142 -- 148@LB@Position Seed - sRNA 40 -- 46@LB@ |
