| 56 |
0.001349 |
0.08097 |
b0287 |
yagU |
-10.29 |
0.147287 |
182 -- 196 |
14 -- 37 |
DUF1440 family inner membrane acid resistance protein |
|
_____________181______________________197\n_____________|________________________|\n5'-AAC...CAUAA________________________AGAUA...GGG-3'\n______________UGGUACA___AGCA______GGGU\n______________|||||||___||||______||||\n______________ACCAUGU___UCGU______CCCA\n3'-UUU...CAAGG_______CGA____AAAAUA____AUACA...UCG-5'\n_____________|________________________|\n_____________38_______________________13\n |
182 -- 188 |
31 -- 37 |
-16.1787 kcal/mol |
3.22484 kcal/mol |
2.65978 kcal/mol |
181 197@LB@ | |@LB@5'-AAC...CAUAA AGAUA...GGG-3'@LB@ UGGUACA AGCA GGGU@LB@ ||||||| |||| ||||@LB@ ACCAUGU UCGU CCCA@LB@3'-UUU...CAAGG CGA AAAAUA AUACA...UCG-5'@LB@ | |@LB@ 38 13@LB@@LB@@LB@Energy -10.29 kcal/mol@LB@Hybridization Energy -16.1787 kcal/mol@LB@Unfolding Energy - mRNA 3.22484 kcal/mol@LB@Unfolding Energy - sRNA 2.65978 kcal/mol@LB@@LB@Position - mRNA 182 -- 196@LB@Position - sRNA 14 -- 37@LB@Position Seed - mRNA 182 -- 188@LB@Position Seed - sRNA 31 -- 37@LB@ |
| 62 |
0.00164 |
0.08891 |
b0922 |
mukF |
-17.51 |
0.001582 |
1 -- 30 |
14 -- 38 |
chromosome condensin MukBEF kleisin-like subunit binds calcium |
|
______________1_____________________________31\n______________|_____________________________|\n___________5'-____AAGAA__U________AA________AAGAC...UGG-3'\n______________CUGG_____GC_GGUUGGCA__UUAUGGGU\n______________||||_____:|_:|:|:|||__||||||||\n______________GACC_____UG_UCGAUCGU__AAUACCCA\n3'-UUU...CCAAG____A_______________AA________AUACA...UCG-5'\n_____________|______________________________|\n_____________39_____________________________13\n |
24 -- 30 |
14 -- 20 |
-25.2653 kcal/mol |
3.2564 kcal/mol |
4.5012 kcal/mol |
1 31@LB@ | |@LB@ 5'- AAGAA U AA AAGAC...UGG-3'@LB@ CUGG GC GGUUGGCA UUAUGGGU@LB@ |||| :| :|:|:||| ||||||||@LB@ GACC UG UCGAUCGU AAUACCCA@LB@3'-UUU...CCAAG A AA AUACA...UCG-5'@LB@ | |@LB@ 39 13@LB@@LB@@LB@Energy -17.51 kcal/mol@LB@Hybridization Energy -25.2653 kcal/mol@LB@Unfolding Energy - mRNA 3.2564 kcal/mol@LB@Unfolding Energy - sRNA 4.5012 kcal/mol@LB@@LB@Position - mRNA 1 -- 30@LB@Position - sRNA 14 -- 38@LB@Position Seed - mRNA 24 -- 30@LB@Position Seed - sRNA 14 -- 20@LB@ |
| 65 |
0.001744 |
0.09016 |
b3541 |
dppD |
-12.71 |
0.044996 |
114 -- 148 |
14 -- 40 |
dipeptide/heme ABC transporter ATPas |
|
_____________113_________________________________149\n_____________|___________________________________|\n5'-UUU...GGCGA_____CUG___GU__________AACCUG______GACGG...GCG-3'\n______________UCCUG___ACG__GCUGGCAUUU______AUGGGU\n______________|||||___||:__|||:||||||______||||||\n______________AGGAC___UGU__CGAUCGUAAA______UACCCA\n3'-UUU...CACCA_____CA________________A___________AUACA...UCG-5'\n_____________|___________________________________|\n_____________41__________________________________13\n |
130 -- 136 |
21 -- 27 |
-26.5011 kcal/mol |
9.21659 kcal/mol |
4.57003 kcal/mol |
113 149@LB@ | |@LB@5'-UUU...GGCGA CUG GU AACCUG GACGG...GCG-3'@LB@ UCCUG ACG GCUGGCAUUU AUGGGU@LB@ ||||| ||: |||:|||||| ||||||@LB@ AGGAC UGU CGAUCGUAAA UACCCA@LB@3'-UUU...CACCA CA A AUACA...UCG-5'@LB@ | |@LB@ 41 13@LB@@LB@@LB@Energy -12.71 kcal/mol@LB@Hybridization Energy -26.5011 kcal/mol@LB@Unfolding Energy - mRNA 9.21659 kcal/mol@LB@Unfolding Energy - sRNA 4.57003 kcal/mol@LB@@LB@Position - mRNA 114 -- 148@LB@Position - sRNA 14 -- 40@LB@Position Seed - mRNA 130 -- 136@LB@Position Seed - sRNA 21 -- 27@LB@ |
| 78 |
0.002256 |
0.09621 |
b0509 |
glxR |
-14.00 |
0.021344 |
191 -- 236 |
14 -- 48 |
tartronate semialdehyde reductase NADH-dependent |
b3882 b3125 |
_____________190______________________________________________237\n_____________|________________________________________________|\n5'-AGG...UAAAA_____UAAUUAUGAAA____GAUUUAU_____UA______________ACACC...CGG-3'\n______________GAGGU___________CUGG_______UGGCU__GGCAU__UAUGGGU\n______________|||||___________||||_______::|||__:||||__|||||||\n______________CUCCA___________GACC_______GUCGA__UCGUA__AUACCCA\n3'-UUU...GAUUC_____CCAAG__________AU_________________AA_______AUACA...UCG-5'\n_____________|________________________________________________|\n_____________49_______________________________________________13\n |
230 -- 236 |
14 -- 20 |
-26.1649 kcal/mol |
7.59311 kcal/mol |
4.57384 kcal/mol |
190 237@LB@ | |@LB@5'-AGG...UAAAA UAAUUAUGAAA GAUUUAU UA ACACC...CGG-3'@LB@ GAGGU CUGG UGGCU GGCAU UAUGGGU@LB@ ||||| |||| ::||| :|||| |||||||@LB@ CUCCA GACC GUCGA UCGUA AUACCCA@LB@3'-UUU...GAUUC CCAAG AU AA AUACA...UCG-5'@LB@ | |@LB@ 49 13@LB@@LB@@LB@Energy -14.00 kcal/mol@LB@Hybridization Energy -26.1649 kcal/mol@LB@Unfolding Energy - mRNA 7.59311 kcal/mol@LB@Unfolding Energy - sRNA 4.57384 kcal/mol@LB@@LB@Position - mRNA 191 -- 236@LB@Position - sRNA 14 -- 48@LB@Position Seed - mRNA 230 -- 236@LB@Position Seed - sRNA 14 -- 20@LB@ |
| 161 |
0.008114 |
0.1694 |
b3656 |
yicI |
-11.96 |
0.067144 |
124 -- 143 |
14 -- 37 |
putative alpha-glucosidase |
b3878 |
_____________123______________________144\n_____________|________________________|\n5'-ACA...CGUUA___A_________UCA________AAACG...UGG-3'\n______________UGG_ACAGCUGGC_______GGGU\n______________|||_||||||:||_______||||\n______________ACC_UGUCGAUCG_______CCCA\n3'-UUU...CAAGG___A_________UAAAAUA____AUACA...UCG-5'\n_____________|________________________|\n_____________38_______________________13\n |
130 -- 136 |
25 -- 31 |
-23.0355 kcal/mol |
8.41802 kcal/mol |
2.65978 kcal/mol |
123 144@LB@ | |@LB@5'-ACA...CGUUA A UCA AAACG...UGG-3'@LB@ UGG ACAGCUGGC GGGU@LB@ ||| ||||||:|| ||||@LB@ ACC UGUCGAUCG CCCA@LB@3'-UUU...CAAGG A UAAAAUA AUACA...UCG-5'@LB@ | |@LB@ 38 13@LB@@LB@@LB@Energy -11.96 kcal/mol@LB@Hybridization Energy -23.0355 kcal/mol@LB@Unfolding Energy - mRNA 8.41802 kcal/mol@LB@Unfolding Energy - sRNA 2.65978 kcal/mol@LB@@LB@Position - mRNA 124 -- 143@LB@Position - sRNA 14 -- 37@LB@Position Seed - mRNA 130 -- 136@LB@Position Seed - sRNA 25 -- 31@LB@ |
| 163 |
0.008426 |
0.1737 |
b2780 |
pyrG |
-11.06 |
0.104451 |
98 -- 140 |
14 -- 51 |
CTP synthetase |
|
_____________97_____________________________________________141\n_____________|______________________________________________|\n5'-UGU...GCGAA_______GAUAAUGAAA____G___C____G______GUUC_____AUACU...GCC-3'\n______________GAGGAGG__________GUUU_UGG_ACAG_U__CAU_____GGGU\n______________:||||||__________|||:_|||_||||_|__|||_____||||\n______________UUCCUCC__________CAAG_ACC_UGUC_A__GUA_____CCCA\n3'-UUU...UCCGA_______AC____________G___A____G_UC___AAAUA____AUACA...UCG-5'\n_____________|______________________________________________|\n_____________52_____________________________________________13\n |
98 -- 104 |
45 -- 51 |
-28.7226 kcal/mol |
13.0099 kcal/mol |
4.65749 kcal/mol |
97 141@LB@ | |@LB@5'-UGU...GCGAA GAUAAUGAAA G C G GUUC AUACU...GCC-3'@LB@ GAGGAGG GUUU UGG ACAG U CAU GGGU@LB@ :|||||| |||: ||| |||| | ||| ||||@LB@ UUCCUCC CAAG ACC UGUC A GUA CCCA@LB@3'-UUU...UCCGA AC G A G UC AAAUA AUACA...UCG-5'@LB@ | |@LB@ 52 13@LB@@LB@@LB@Energy -11.06 kcal/mol@LB@Hybridization Energy -28.7226 kcal/mol@LB@Unfolding Energy - mRNA 13.0099 kcal/mol@LB@Unfolding Energy - sRNA 4.65749 kcal/mol@LB@@LB@Position - mRNA 98 -- 140@LB@Position - sRNA 14 -- 51@LB@Position Seed - mRNA 98 -- 104@LB@Position Seed - sRNA 45 -- 51@LB@ |
| 6 |
7.051e-06 |
0.00395 |
b1213 |
ychQ |
-11.22 |
0.096653 |
74 -- 98 |
15 -- 40 |
SIRB family inner membrane protein |
|
_____________73___________________________99\n_____________|____________________________|\n5'-GAC...UCUGC______AAC__________GCA______CGAAG...AUC-3'\n______________UUCUGG___AUGGCUGGCA______GGG\n______________|:||||___|::|||:|||______|||\n______________AGGACC___UGUCGAUCGU______CCC\n3'-UUU...CACCA______A____________AAAAUA___AAUAC...UCG-5'\n_____________|____________________________|\n_____________41___________________________14\n |
86 -- 92 |
24 -- 30 |
-24.2509 kcal/mol |
8.46179 kcal/mol |
4.56973 kcal/mol |
73 99@LB@ | |@LB@5'-GAC...UCUGC AAC GCA CGAAG...AUC-3'@LB@ UUCUGG AUGGCUGGCA GGG@LB@ |:|||| |::|||:||| |||@LB@ AGGACC UGUCGAUCGU CCC@LB@3'-UUU...CACCA A AAAAUA AAUAC...UCG-5'@LB@ | |@LB@ 41 14@LB@@LB@@LB@Energy -11.22 kcal/mol@LB@Hybridization Energy -24.2509 kcal/mol@LB@Unfolding Energy - mRNA 8.46179 kcal/mol@LB@Unfolding Energy - sRNA 4.56973 kcal/mol@LB@@LB@Position - mRNA 74 -- 98@LB@Position - sRNA 15 -- 40@LB@Position Seed - mRNA 86 -- 92@LB@Position Seed - sRNA 24 -- 30@LB@ |
| 9 |
2.519e-05 |
0.009407 |
b0435 |
bolA |
-15.32 |
0.008970 |
138 -- 163 |
15 -- 36 |
stationary-phase morphogene transcriptional repressor for mreB; also regulator for dacA dacC and ampC |
|
_____________137________________________164\n_____________|__________________________|\n5'-UGA...GAAAC___AAAA_____________AAA___AUGGA...CCG-3'\n______________GGU____GCGGCUAGUAUUU___GGG\n______________|||____:|:|||||:||||___|||\n______________CCA____UGUCGAUCGUAAA___CCC\n3'-UUU...AAGGA____________________AUA___AAUAC...UCG-5'\n_____________|__________________________|\n_____________37_________________________14\n |
151 -- 157 |
21 -- 27 |
-22.9811 kcal/mol |
6.21269 kcal/mol |
1.45166 kcal/mol |
137 164@LB@ | |@LB@5'-UGA...GAAAC AAAA AAA AUGGA...CCG-3'@LB@ GGU GCGGCUAGUAUUU GGG@LB@ ||| :|:|||||:|||| |||@LB@ CCA UGUCGAUCGUAAA CCC@LB@3'-UUU...AAGGA AUA AAUAC...UCG-5'@LB@ | |@LB@ 37 14@LB@@LB@@LB@Energy -15.32 kcal/mol@LB@Hybridization Energy -22.9811 kcal/mol@LB@Unfolding Energy - mRNA 6.21269 kcal/mol@LB@Unfolding Energy - sRNA 1.45166 kcal/mol@LB@@LB@Position - mRNA 138 -- 163@LB@Position - sRNA 15 -- 36@LB@Position Seed - mRNA 151 -- 157@LB@Position Seed - sRNA 21 -- 27@LB@ |
| 14 |
9.306e-05 |
0.02121 |
b1205 |
ychH |
-11.92 |
0.068307 |
242 -- 277 |
15 -- 49 |
DUF2583 family putative inner membrane protein |
|
_____________241____________________________________278\n_____________|______________________________________|\n5'-CAA...CUCAU____U___G________GUAAU_G____CGGC______GUAUU...UAC-3'\n______________GGGG_UGG__UCUGGUG_____G_UGGU_____GUGGG\n______________||:|_|||__:|||||:_____|_|:|:_____:||||\n______________CCUC_ACC__GGACCAU_____C_AUCG_____UACCC\n3'-UUU...CGAUU____C___AA_______GU____G____UAAAA_____AAUAC...UCG-5'\n_____________|______________________________________|\n_____________50_____________________________________14\n |
251 -- 257 |
33 -- 39 |
-28.7764 kcal/mol |
12.2787 kcal/mol |
4.57366 kcal/mol |
241 278@LB@ | |@LB@5'-CAA...CUCAU U G GUAAU G CGGC GUAUU...UAC-3'@LB@ GGGG UGG UCUGGUG G UGGU GUGGG@LB@ ||:| ||| :|||||: | |:|: :||||@LB@ CCUC ACC GGACCAU C AUCG UACCC@LB@3'-UUU...CGAUU C AA GU G UAAAA AAUAC...UCG-5'@LB@ | |@LB@ 50 14@LB@@LB@@LB@Energy -11.92 kcal/mol@LB@Hybridization Energy -28.7764 kcal/mol@LB@Unfolding Energy - mRNA 12.2787 kcal/mol@LB@Unfolding Energy - sRNA 4.57366 kcal/mol@LB@@LB@Position - mRNA 242 -- 277@LB@Position - sRNA 15 -- 49@LB@Position Seed - mRNA 251 -- 257@LB@Position Seed - sRNA 33 -- 39@LB@ |
| 32 |
0.0005297 |
0.05563 |
b3456 |
livM |
-14.95 |
0.011565 |
245 -- 274 |
15 -- 42 |
branched-chain amino acid ABC transporter permease |
|
_____________244____________________________275\n_____________|______________________________|\n5'-GCC...GCGAU______U____U___G_____C________CGUGC...CCA-3'\n______________GUUCUU_GUGC_GGC_GGCGU_UUUAUGGG\n______________||||:|_||:|_:||_:||:|_||||||||\n______________CAAGGA_CAUG_UCG_UCGUA_AAAUACCC\n3'-UUU...UCCAC______C________A______________AAUAC...UCG-5'\n_____________|______________________________|\n_____________43_____________________________14\n |
268 -- 274 |
15 -- 21 |
-29.6256 kcal/mol |
10.1077 kcal/mol |
4.57031 kcal/mol |
244 275@LB@ | |@LB@5'-GCC...GCGAU U U G C CGUGC...CCA-3'@LB@ GUUCUU GUGC GGC GGCGU UUUAUGGG@LB@ ||||:| ||:| :|| :||:| ||||||||@LB@ CAAGGA CAUG UCG UCGUA AAAUACCC@LB@3'-UUU...UCCAC C A AAUAC...UCG-5'@LB@ | |@LB@ 43 14@LB@@LB@@LB@Energy -14.95 kcal/mol@LB@Hybridization Energy -29.6256 kcal/mol@LB@Unfolding Energy - mRNA 10.1077 kcal/mol@LB@Unfolding Energy - sRNA 4.57031 kcal/mol@LB@@LB@Position - mRNA 245 -- 274@LB@Position - sRNA 15 -- 42@LB@Position Seed - mRNA 268 -- 274@LB@Position Seed - sRNA 15 -- 21@LB@ |
