| 174 |
0.009477 |
0.1831 |
b3186 |
rplU |
-11.27 |
0.094314 |
2 -- 27 |
9 -- 34 |
50S ribosomal subunit protein L21 |
|
_____________1____________________________28\n_____________|____________________________|\n__________5'-U_________G_A_____A____GAU___ACUGA...UUG-3'\n______________UAUGGUUAG_A___UAU_GGGU___UGU\n______________||::|:|||_|___|||_||||___|||\n______________AUGUCGAUC_U___AUA_CCCA___ACA\n3'-UUU...GGACC_________G_AAA________AU____AAAAGUCG-5'\n_____________|____________________________|\n_____________35___________________________8\n |
4 -- 10 |
26 -- 32 |
-16.432 kcal/mol |
3.67439 kcal/mol |
1.48697 kcal/mol |
1 28@LB@ | |@LB@ 5'-U G A A GAU ACUGA...UUG-3'@LB@ UAUGGUUAG A UAU GGGU UGU@LB@ ||::|:||| | ||| |||| |||@LB@ AUGUCGAUC U AUA CCCA ACA@LB@3'-UUU...GGACC G AAA AU AAAAGUCG-5'@LB@ | |@LB@ 35 8@LB@@LB@@LB@Energy -11.27 kcal/mol@LB@Hybridization Energy -16.432 kcal/mol@LB@Unfolding Energy - mRNA 3.67439 kcal/mol@LB@Unfolding Energy - sRNA 1.48697 kcal/mol@LB@@LB@Position - mRNA 2 -- 27@LB@Position - sRNA 9 -- 34@LB@Position Seed - mRNA 4 -- 10@LB@Position Seed - sRNA 26 -- 32@LB@ |
| 184 |
0.01055 |
0.1919 |
b2175 |
mepS |
-11.10 |
0.102353 |
43 -- 84 |
9 -- 46 |
murein DD-endopeptidase space-maker hydrolase mutational suppressor of prc thermosensitivity outer membrane lipoprotein weak murein LD-carboxypeptidase |
|
_____________42____________________________________________85\n_____________|_____________________________________________|\n5'-CAA...GCCUC__C___AGAUUA____C_______A__UA________C_______CCACA...CAA-3'\n______________GG_GGU______UCCU___ACAGC_UA__AUUUUGUG_GUUA_GU\n______________||_|||______||||___|||||_||__|||||:||_||||_||\n______________CC_CCA______AGGA___UGUCG_AU__UAAAAUAC_CAAU_CA\n3'-UUU...UUCCU__A_____________CCA________CG________C____A__AAAAGUCG-5'\n_____________|_____________________________________________|\n_____________47____________________________________________8\n |
71 -- 77 |
17 -- 23 |
-25.0471 kcal/mol |
9.34223 kcal/mol |
4.60648 kcal/mol |
42 85@LB@ | |@LB@5'-CAA...GCCUC C AGAUUA C A UA C CCACA...CAA-3'@LB@ GG GGU UCCU ACAGC UA AUUUUGUG GUUA GU@LB@ || ||| |||| ||||| || |||||:|| |||| ||@LB@ CC CCA AGGA UGUCG AU UAAAAUAC CAAU CA@LB@3'-UUU...UUCCU A CCA CG C A AAAAGUCG-5'@LB@ | |@LB@ 47 8@LB@@LB@@LB@Energy -11.10 kcal/mol@LB@Hybridization Energy -25.0471 kcal/mol@LB@Unfolding Energy - mRNA 9.34223 kcal/mol@LB@Unfolding Energy - sRNA 4.60648 kcal/mol@LB@@LB@Position - mRNA 43 -- 84@LB@Position - sRNA 9 -- 46@LB@Position Seed - mRNA 71 -- 77@LB@Position Seed - sRNA 17 -- 23@LB@ |
| 13 |
6.02e-05 |
0.01556 |
b1686 |
menI |
-18.50 |
0.000608 |
260 -- 300 |
10 -- 49 |
1 4-dihydroxy-2-naphthoyl-CoA hydrolase |
|
_____________259_______________________________________300\n_____________|_________________________________________|\n5'-GGC...AACAU__U____________A___UC___UUGAACA___U___G___-3'\n______________GG_GG_GGUUCCUGG_UAU__GCU_______UAU_GGU_AUG\n______________||_||_|||||||||_||:__|||_______|||_|||_|||\n______________CC_CC_CCAAGGACC_AUG__CGA_______AUA_CCA_UAC\n3'-UUU...CGAUU__U__A_____________U____UCGUAAA___C___A___AAAAA...UCG-5'\n_____________|__________________________________________|\n_____________50_________________________________________9\n |
267 -- 273 |
35 -- 41 |
-31.9875 kcal/mol |
8.87718 kcal/mol |
4.60649 kcal/mol |
259 300@LB@ | |@LB@5'-GGC...AACAU U A UC UUGAACA U G -3'@LB@ GG GG GGUUCCUGG UAU GCU UAU GGU AUG@LB@ || || ||||||||| ||: ||| ||| ||| |||@LB@ CC CC CCAAGGACC AUG CGA AUA CCA UAC@LB@3'-UUU...CGAUU U A U UCGUAAA C A AAAAA...UCG-5'@LB@ | |@LB@ 50 9@LB@@LB@@LB@Energy -18.50 kcal/mol@LB@Hybridization Energy -31.9875 kcal/mol@LB@Unfolding Energy - mRNA 8.87718 kcal/mol@LB@Unfolding Energy - sRNA 4.60649 kcal/mol@LB@@LB@Position - mRNA 260 -- 300@LB@Position - sRNA 10 -- 49@LB@Position Seed - mRNA 267 -- 273@LB@Position Seed - sRNA 35 -- 41@LB@ |
| 74 |
0.00218 |
0.09621 |
b2722 |
hycD |
-16.42 |
0.003958 |
87 -- 124 |
10 -- 46 |
hydrogenase 3 membrane subunit |
|
_____________86_______________________________________125\n_____________|________________________________________|\n5'-UCA...AAUCC________U_______CG________GUGCGA___GA___CGUUG...ACC-3'\n______________GGUG__UC_CUGGUGC__GGCUGGCA______GGG__GUG\n______________||||__||_|||||:|__:|||:|||______|||__:||\n______________CCAC__AG_GACCAUG__UCGAUCGU______CCC__UAC\n3'-UUU...UUCCU____CA____________________AAAAUA___AA___AAAAA...UCG-5'\n_____________|________________________________________|\n_____________47_______________________________________9\n |
104 -- 110 |
24 -- 30 |
-37.0223 kcal/mol |
15.9993 kcal/mol |
4.60552 kcal/mol |
86 125@LB@ | |@LB@5'-UCA...AAUCC U CG GUGCGA GA CGUUG...ACC-3'@LB@ GGUG UC CUGGUGC GGCUGGCA GGG GUG@LB@ |||| || |||||:| :|||:||| ||| :||@LB@ CCAC AG GACCAUG UCGAUCGU CCC UAC@LB@3'-UUU...UUCCU CA AAAAUA AA AAAAA...UCG-5'@LB@ | |@LB@ 47 9@LB@@LB@@LB@Energy -16.42 kcal/mol@LB@Hybridization Energy -37.0223 kcal/mol@LB@Unfolding Energy - mRNA 15.9993 kcal/mol@LB@Unfolding Energy - sRNA 4.60552 kcal/mol@LB@@LB@Position - mRNA 87 -- 124@LB@Position - sRNA 10 -- 46@LB@Position Seed - mRNA 104 -- 110@LB@Position Seed - sRNA 24 -- 30@LB@ |
| 77 |
0.002255 |
0.09621 |
b3052 |
hldE |
-16.16 |
0.004835 |
103 -- 144 |
10 -- 48 |
heptose 7-phosphate kinase and heptose 1-phosphate adenyltransferase |
|
_____________102___________________________________________145\n_____________|_____________________________________________|\n5'-GCG...CCGCA___C___AA_________GGGCA________GAA_____CUG___GAAGA...CGC-3'\n______________GAG_GUG____CUGGUGC_____AGCUGGCA____GUGG___GUG\n______________|||_|||____|||||:|_____||||:|||____:|||___:||\n______________CUC_CAC____GACCAUG_____UCGAUCGU____UACC___UAC\n3'-UUU...GAUUC_______CAAG____________________AAAA____CAA___AAAAA...UCG-5'\n_____________|_____________________________________________|\n_____________49____________________________________________9\n |
125 -- 131 |
24 -- 30 |
-34.5885 kcal/mol |
13.822 kcal/mol |
4.60637 kcal/mol |
102 145@LB@ | |@LB@5'-GCG...CCGCA C AA GGGCA GAA CUG GAAGA...CGC-3'@LB@ GAG GUG CUGGUGC AGCUGGCA GUGG GUG@LB@ ||| ||| |||||:| ||||:||| :||| :||@LB@ CUC CAC GACCAUG UCGAUCGU UACC UAC@LB@3'-UUU...GAUUC CAAG AAAA CAA AAAAA...UCG-5'@LB@ | |@LB@ 49 9@LB@@LB@@LB@Energy -16.16 kcal/mol@LB@Hybridization Energy -34.5885 kcal/mol@LB@Unfolding Energy - mRNA 13.822 kcal/mol@LB@Unfolding Energy - sRNA 4.60637 kcal/mol@LB@@LB@Position - mRNA 103 -- 144@LB@Position - sRNA 10 -- 48@LB@Position Seed - mRNA 125 -- 131@LB@Position Seed - sRNA 24 -- 30@LB@ |
| 128 |
0.005434 |
0.142 |
b1628 |
rsxB |
-10.87 |
0.114026 |
241 -- 273 |
10 -- 44 |
SoxR iron-sulfur cluster reduction factor component; putative iron-sulfur protein |
|
_____________240___________________________________274\n_____________|_____________________________________|\n5'-CAC...CCUGC___G______CGUU____GC_____C___________CCUCC...ACG-3'\n______________UGG__CCUGG____UGGC___CAUU___UGGGUUAUG\n______________|||__|||||____::||___||||___|||||||||\n______________ACC__GGACC____GUCG___GUAA___ACCCAAUAC\n3'-UUU...CCUCC___AA_____AU______AUC____AAU_________AAAAA...UCG-5'\n_____________|_____________________________________|\n_____________45____________________________________9\n |
267 -- 273 |
10 -- 16 |
-28.3112 kcal/mol |
12.8396 kcal/mol |
4.60525 kcal/mol |
240 274@LB@ | |@LB@5'-CAC...CCUGC G CGUU GC C CCUCC...ACG-3'@LB@ UGG CCUGG UGGC CAUU UGGGUUAUG@LB@ ||| ||||| ::|| |||| |||||||||@LB@ ACC GGACC GUCG GUAA ACCCAAUAC@LB@3'-UUU...CCUCC AA AU AUC AAU AAAAA...UCG-5'@LB@ | |@LB@ 45 9@LB@@LB@@LB@Energy -10.87 kcal/mol@LB@Hybridization Energy -28.3112 kcal/mol@LB@Unfolding Energy - mRNA 12.8396 kcal/mol@LB@Unfolding Energy - sRNA 4.60525 kcal/mol@LB@@LB@Position - mRNA 241 -- 273@LB@Position - sRNA 10 -- 44@LB@Position Seed - mRNA 267 -- 273@LB@Position Seed - sRNA 10 -- 16@LB@ |
| 147 |
0.006963 |
0.1592 |
b0723 |
sdhA |
-11.23 |
0.096056 |
156 -- 186 |
10 -- 46 |
succinate dehydrogenase flavoprotein subunit |
|
_____________155_______________________________________187\n_____________|_________________________________________|\n5'-GGU...GCACU________AC_____________A_______AUUC______GUGUG...GUG-3'\n______________GGUGGUUU____________GUG_UUUAUGG____GUUGUG\n______________|||||||:____________|::_|||||||____|||:||\n______________CCACCAAG____________CGU_AAAUACC____CAAUAC\n3'-UUU...UUCCU________GACCAUGUCGAU___A_________________AAAAA...UCG-5'\n_____________|_________________________________________|\n_____________47________________________________________9\n |
170 -- 176 |
16 -- 22 |
-22.0315 kcal/mol |
6.19365 kcal/mol |
4.60552 kcal/mol |
155 187@LB@ | |@LB@5'-GGU...GCACU AC A AUUC GUGUG...GUG-3'@LB@ GGUGGUUU GUG UUUAUGG GUUGUG@LB@ |||||||: |:: ||||||| |||:||@LB@ CCACCAAG CGU AAAUACC CAAUAC@LB@3'-UUU...UUCCU GACCAUGUCGAU A AAAAA...UCG-5'@LB@ | |@LB@ 47 9@LB@@LB@@LB@Energy -11.23 kcal/mol@LB@Hybridization Energy -22.0315 kcal/mol@LB@Unfolding Energy - mRNA 6.19365 kcal/mol@LB@Unfolding Energy - sRNA 4.60552 kcal/mol@LB@@LB@Position - mRNA 156 -- 186@LB@Position - sRNA 10 -- 46@LB@Position Seed - mRNA 170 -- 176@LB@Position Seed - sRNA 16 -- 22@LB@ |
| 178 |
0.009929 |
0.1875 |
b1278 |
pgpB |
-11.49 |
0.084643 |
145 -- 171 |
10 -- 41 |
phosphatidylglycerophosphatase B |
|
_____________144______________________________172\n_____________|________________________________|\n5'-GUU...AAUUU_______AA_____________CA________AUUGU...AAC-3'\n______________UUCCUGG_____CUGGCGUUUU____GUUAUG\n______________|||||||_____||:||:||||____||||||\n______________AAGGACC_____GAUCGUAAAA____CAAUAC\n3'-UUU...CCACC_______AUGUC__________UACC______AAAAA...UCG-5'\n_____________|________________________________|\n_____________42_______________________________9\n |
157 -- 163 |
20 -- 26 |
-25.137 kcal/mol |
9.03979 kcal/mol |
4.60294 kcal/mol |
144 172@LB@ | |@LB@5'-GUU...AAUUU AA CA AUUGU...AAC-3'@LB@ UUCCUGG CUGGCGUUUU GUUAUG@LB@ ||||||| ||:||:|||| ||||||@LB@ AAGGACC GAUCGUAAAA CAAUAC@LB@3'-UUU...CCACC AUGUC UACC AAAAA...UCG-5'@LB@ | |@LB@ 42 9@LB@@LB@@LB@Energy -11.49 kcal/mol@LB@Hybridization Energy -25.137 kcal/mol@LB@Unfolding Energy - mRNA 9.03979 kcal/mol@LB@Unfolding Energy - sRNA 4.60294 kcal/mol@LB@@LB@Position - mRNA 145 -- 171@LB@Position - sRNA 10 -- 41@LB@Position Seed - mRNA 157 -- 163@LB@Position Seed - sRNA 20 -- 26@LB@ |
| 63 |
0.00172 |
0.09016 |
b1209 |
lolB |
-15.80 |
0.006355 |
144 -- 167 |
11 -- 36 |
lipoprotein localization factor |
|
_____________143________________________168\n_____________|__________________________|\n5'-AAU...CGGAC____AC_________AA_________AACUG...GCC-3'\n______________GGUA__GCUAGCAUU____GGGUUAU\n______________||||__|||||||||____|||||||\n______________CCAU__CGAUCGUAA____CCCAAUA\n3'-UUU...AAGGA____GU_________AAUA_______CAAAA...UCG-5'\n_____________|__________________________|\n_____________37_________________________10\n |
161 -- 167 |
11 -- 17 |
-25.6291 kcal/mol |
8.35909 kcal/mol |
1.47376 kcal/mol |
143 168@LB@ | |@LB@5'-AAU...CGGAC AC AA AACUG...GCC-3'@LB@ GGUA GCUAGCAUU GGGUUAU@LB@ |||| ||||||||| |||||||@LB@ CCAU CGAUCGUAA CCCAAUA@LB@3'-UUU...AAGGA GU AAUA CAAAA...UCG-5'@LB@ | |@LB@ 37 10@LB@@LB@@LB@Energy -15.80 kcal/mol@LB@Hybridization Energy -25.6291 kcal/mol@LB@Unfolding Energy - mRNA 8.35909 kcal/mol@LB@Unfolding Energy - sRNA 1.47376 kcal/mol@LB@@LB@Position - mRNA 144 -- 167@LB@Position - sRNA 11 -- 36@LB@Position Seed - mRNA 161 -- 167@LB@Position Seed - sRNA 11 -- 17@LB@ |
| 75 |
0.002192 |
0.09621 |
b3950 |
frwB |
-15.16 |
0.010002 |
30 -- 54 |
11 -- 46 |
putative enzyme IIB component of PTS |
b3899 |
_____________29___________________________________55\n_____________|____________________________________|\n5'-GCA...CUGCC_______GAA________A_________________AUCGC...GGG-3'\n______________GGUGGUU________GGC_AGC______UGGGUUAU\n______________|||||||________:||_|||______||||||||\n______________CCACCAA________UCG_UCG______ACCCAAUA\n3'-UUU...UUCCU_______GGACCAUG___A___UAAAAU________CAAAA...UCG-5'\n_____________|____________________________________|\n_____________47___________________________________10\n |
48 -- 54 |
11 -- 17 |
-24.5661 kcal/mol |
4.81447 kcal/mol |
4.59143 kcal/mol |
29 55@LB@ | |@LB@5'-GCA...CUGCC GAA A AUCGC...GGG-3'@LB@ GGUGGUU GGC AGC UGGGUUAU@LB@ ||||||| :|| ||| ||||||||@LB@ CCACCAA UCG UCG ACCCAAUA@LB@3'-UUU...UUCCU GGACCAUG A UAAAAU CAAAA...UCG-5'@LB@ | |@LB@ 47 10@LB@@LB@@LB@Energy -15.16 kcal/mol@LB@Hybridization Energy -24.5661 kcal/mol@LB@Unfolding Energy - mRNA 4.81447 kcal/mol@LB@Unfolding Energy - sRNA 4.59143 kcal/mol@LB@@LB@Position - mRNA 30 -- 54@LB@Position - sRNA 11 -- 46@LB@Position Seed - mRNA 48 -- 54@LB@Position Seed - sRNA 11 -- 17@LB@ |
