20 |
0.0001678 |
0.0282 |
b2056 |
wcaD |
-17.66 |
0.001373 |
77 -- 104 |
24 -- 48 |
putative colanic acid polymerase |
|
_____________76___________________________105\n_____________|____________________________|\n5'-GCC...AAGAA______CUGCAA____________A___AACCG...UCA-3'\n______________GAGGUG______CUGGUGCAGUUA_GCA\n______________||||||______|||||:|||:||_|||\n______________CUCCAC______GACCAUGUCGAU_CGU\n3'-UUU...GAUUC______CAAG__________________AAAAU...UCG-5'\n_____________|____________________________|\n_____________49___________________________23\n |
94 -- 100 |
27 -- 33 |
-32.1729 kcal/mol |
9.95006 kcal/mol |
4.55899 kcal/mol |
76 105@LB@ | |@LB@5'-GCC...AAGAA CUGCAA A AACCG...UCA-3'@LB@ GAGGUG CUGGUGCAGUUA GCA@LB@ |||||| |||||:|||:|| |||@LB@ CUCCAC GACCAUGUCGAU CGU@LB@3'-UUU...GAUUC CAAG AAAAU...UCG-5'@LB@ | |@LB@ 49 23@LB@@LB@@LB@Energy -17.66 kcal/mol@LB@Hybridization Energy -32.1729 kcal/mol@LB@Unfolding Energy - mRNA 9.95006 kcal/mol@LB@Unfolding Energy - sRNA 4.55899 kcal/mol@LB@@LB@Position - mRNA 77 -- 104@LB@Position - sRNA 24 -- 48@LB@Position Seed - mRNA 94 -- 100@LB@Position Seed - sRNA 27 -- 33@LB@ |
30 |
0.0004774 |
0.05348 |
b2148 |
mglC |
-7.69 |
0.389595 |
275 -- 281 |
24 -- 30 |
methyl-galactoside transporter subunit |
|
_____________274_____282\n_____________|_______|\n5'-AUC...GUUUU_______AUUAU...ACC-3'\n______________GCUGGCG\n______________|||:||:\n______________CGAUCGU\n3'-UUU...CAUGU_______AAAAU...UCG-5'\n_____________|_______|\n_____________31______23\n |
275 -- 281 |
24 -- 30 |
-10.2126 kcal/mol |
1.14582 kcal/mol |
1.37559 kcal/mol |
274 282@LB@ | |@LB@5'-AUC...GUUUU AUUAU...ACC-3'@LB@ GCUGGCG@LB@ |||:||:@LB@ CGAUCGU@LB@3'-UUU...CAUGU AAAAU...UCG-5'@LB@ | |@LB@ 31 23@LB@@LB@@LB@Energy -7.69 kcal/mol@LB@Hybridization Energy -10.2126 kcal/mol@LB@Unfolding Energy - mRNA 1.14582 kcal/mol@LB@Unfolding Energy - sRNA 1.37559 kcal/mol@LB@@LB@Position - mRNA 275 -- 281@LB@Position - sRNA 24 -- 30@LB@Position Seed - mRNA 275 -- 281@LB@Position Seed - sRNA 24 -- 30@LB@ |
37 |
0.0006972 |
0.06333 |
b1594 |
mlc |
-9.54 |
0.201866 |
190 -- 226 |
24 -- 50 |
glucosamine anaerobic growth regulon transcriptional repressor; autorepressor |
|
_____________189___________________________________227\n_____________|_____________________________________|\n5'-AAA...AUAUA____GUAUGC_______G___AAAAC____CUG____CAUUG...GUA-3'\n______________GGGA______GGUGGUU_CUG_____CAGC___GGCA\n______________:|||______|||||||_|||_____||||___:|||\n______________UCCU______CCACCAA_GAC_____GUCG___UCGU\n3'-UUU...CCGAU_________________G___CAU______A______AAAAU...UCG-5'\n_____________|_____________________________________|\n_____________51____________________________________23\n |
200 -- 206 |
40 -- 46 |
-27.1319 kcal/mol |
12.9802 kcal/mol |
4.6134 kcal/mol |
189 227@LB@ | |@LB@5'-AAA...AUAUA GUAUGC G AAAAC CUG CAUUG...GUA-3'@LB@ GGGA GGUGGUU CUG CAGC GGCA@LB@ :||| ||||||| ||| |||| :|||@LB@ UCCU CCACCAA GAC GUCG UCGU@LB@3'-UUU...CCGAU G CAU A AAAAU...UCG-5'@LB@ | |@LB@ 51 23@LB@@LB@@LB@Energy -9.54 kcal/mol@LB@Hybridization Energy -27.1319 kcal/mol@LB@Unfolding Energy - mRNA 12.9802 kcal/mol@LB@Unfolding Energy - sRNA 4.6134 kcal/mol@LB@@LB@Position - mRNA 190 -- 226@LB@Position - sRNA 24 -- 50@LB@Position Seed - mRNA 200 -- 206@LB@Position Seed - sRNA 40 -- 46@LB@ |
41 |
0.0008276 |
0.06626 |
b1218 |
chaC |
-8.54 |
0.293650 |
119 -- 139 |
24 -- 45 |
cation transport regulator |
|
_____________118____________________140\n_____________|______________________|\n5'-AUA...CGUUA________AAAAUG________AAAAU...CGC-3'\n______________GUGGUUUC______AGC_AGUA\n______________||||||:|______|||_||:|\n______________CACCAAGG______UCG_UCGU\n3'-UUU...UCCUC________ACCAUG___A____AAAAU...UCG-5'\n_____________|______________________|\n_____________46_____________________23\n |
120 -- 126 |
38 -- 44 |
-17.6586 kcal/mol |
4.55792 kcal/mol |
4.55794 kcal/mol |
118 140@LB@ | |@LB@5'-AUA...CGUUA AAAAUG AAAAU...CGC-3'@LB@ GUGGUUUC AGC AGUA@LB@ ||||||:| ||| ||:|@LB@ CACCAAGG UCG UCGU@LB@3'-UUU...UCCUC ACCAUG A AAAAU...UCG-5'@LB@ | |@LB@ 46 23@LB@@LB@@LB@Energy -8.54 kcal/mol@LB@Hybridization Energy -17.6586 kcal/mol@LB@Unfolding Energy - mRNA 4.55792 kcal/mol@LB@Unfolding Energy - sRNA 4.55794 kcal/mol@LB@@LB@Position - mRNA 119 -- 139@LB@Position - sRNA 24 -- 45@LB@Position Seed - mRNA 120 -- 126@LB@Position Seed - sRNA 38 -- 44@LB@ |
55 |
0.001331 |
0.08097 |
b2742 |
nlpD |
-12.02 |
0.064935 |
253 -- 272 |
24 -- 44 |
activator of AmiC murein hydrolase activity lipoprotein |
|
_____________252___________________273\n_____________|_____________________|\n5'-UAU...GUCAC_______GC____________GGCUG...CGG-3'\n______________UGGUUUC___UAUGGCUGGCA\n______________|||||:|___||::|||:|||\n______________ACCAAGG___AUGUCGAUCGU\n3'-UUU...CCUCC_______ACC___________AAAAU...UCG-5'\n_____________|_____________________|\n_____________45____________________23\n |
266 -- 272 |
24 -- 30 |
-23.7485 kcal/mol |
7.16759 kcal/mol |
4.55788 kcal/mol |
252 273@LB@ | |@LB@5'-UAU...GUCAC GC GGCUG...CGG-3'@LB@ UGGUUUC UAUGGCUGGCA@LB@ |||||:| ||::|||:|||@LB@ ACCAAGG AUGUCGAUCGU@LB@3'-UUU...CCUCC ACC AAAAU...UCG-5'@LB@ | |@LB@ 45 23@LB@@LB@@LB@Energy -12.02 kcal/mol@LB@Hybridization Energy -23.7485 kcal/mol@LB@Unfolding Energy - mRNA 7.16759 kcal/mol@LB@Unfolding Energy - sRNA 4.55788 kcal/mol@LB@@LB@Position - mRNA 253 -- 272@LB@Position - sRNA 24 -- 44@LB@Position Seed - mRNA 266 -- 272@LB@Position Seed - sRNA 24 -- 30@LB@ |
71 |
0.001933 |
0.09081 |
b2044 |
wcaL |
-10.40 |
0.140507 |
12 -- 21 |
24 -- 33 |
putative glycosyl transferase |
|
_____________11_________22\n_____________|__________|\n5'-GGG...AUGCA________G_CUACC...AGA-3'\n______________GCAGCUGG_A\n______________:|||||:|_|\n______________UGUCGAUC_U\n3'-UUU...GACCA________G_AAAAU...UCG-5'\n_____________|__________|\n_____________34_________23\n |
13 -- 19 |
26 -- 32 |
-13.1871 kcal/mol |
1.35791 kcal/mol |
1.42716 kcal/mol |
11 22@LB@ | |@LB@5'-GGG...AUGCA G CUACC...AGA-3'@LB@ GCAGCUGG A@LB@ :|||||:| |@LB@ UGUCGAUC U@LB@3'-UUU...GACCA G AAAAU...UCG-5'@LB@ | |@LB@ 34 23@LB@@LB@@LB@Energy -10.40 kcal/mol@LB@Hybridization Energy -13.1871 kcal/mol@LB@Unfolding Energy - mRNA 1.35791 kcal/mol@LB@Unfolding Energy - sRNA 1.42716 kcal/mol@LB@@LB@Position - mRNA 12 -- 21@LB@Position - sRNA 24 -- 33@LB@Position Seed - mRNA 13 -- 19@LB@Position Seed - sRNA 26 -- 32@LB@ |
103 |
0.00377 |
0.123 |
b2922 |
yggE |
-10.91 |
0.111523 |
45 -- 69 |
24 -- 45 |
oxidative stress defense protein |
|
_____________44________________________70\n_____________|_________________________|\n5'-GCA...GUUAU_______AU__CCU___________AGAGA...CCG-3'\n______________GUGGUUU__UG___UGCAGCUGGCG\n______________||||||:__||___|:|||||:||:\n______________CACCAAG__AC___AUGUCGAUCGU\n3'-UUU...UCCUC_______G___C_____________AAAAU...UCG-5'\n_____________|_________________________|\n_____________46________________________23\n |
63 -- 69 |
24 -- 30 |
-26.0515 kcal/mol |
10.579 kcal/mol |
4.55794 kcal/mol |
44 70@LB@ | |@LB@5'-GCA...GUUAU AU CCU AGAGA...CCG-3'@LB@ GUGGUUU UG UGCAGCUGGCG@LB@ ||||||: || |:|||||:||:@LB@ CACCAAG AC AUGUCGAUCGU@LB@3'-UUU...UCCUC G C AAAAU...UCG-5'@LB@ | |@LB@ 46 23@LB@@LB@@LB@Energy -10.91 kcal/mol@LB@Hybridization Energy -26.0515 kcal/mol@LB@Unfolding Energy - mRNA 10.579 kcal/mol@LB@Unfolding Energy - sRNA 4.55794 kcal/mol@LB@@LB@Position - mRNA 45 -- 69@LB@Position - sRNA 24 -- 45@LB@Position Seed - mRNA 63 -- 69@LB@Position Seed - sRNA 24 -- 30@LB@ |
123 |
0.005173 |
0.1413 |
b0839 |
dacC |
-12.36 |
0.054489 |
29 -- 38 |
24 -- 33 |
D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6a |
|
_____________28_________39\n_____________|__________|\n5'-AUG...AAGCA__________AAAAA...AAG-3'\n______________ACAGCUGGCA\n______________||||||:|||\n______________UGUCGAUCGU\n3'-UUU...GACCA__________AAAAU...UCG-5'\n_____________|__________|\n_____________34_________23\n |
32 -- 38 |
24 -- 30 |
-17.0494 kcal/mol |
3.2632 kcal/mol |
1.42716 kcal/mol |
28 39@LB@ | |@LB@5'-AUG...AAGCA AAAAA...AAG-3'@LB@ ACAGCUGGCA@LB@ ||||||:|||@LB@ UGUCGAUCGU@LB@3'-UUU...GACCA AAAAU...UCG-5'@LB@ | |@LB@ 34 23@LB@@LB@@LB@Energy -12.36 kcal/mol@LB@Hybridization Energy -17.0494 kcal/mol@LB@Unfolding Energy - mRNA 3.2632 kcal/mol@LB@Unfolding Energy - sRNA 1.42716 kcal/mol@LB@@LB@Position - mRNA 29 -- 38@LB@Position - sRNA 24 -- 33@LB@Position Seed - mRNA 32 -- 38@LB@Position Seed - sRNA 24 -- 30@LB@ |
124 |
0.00526 |
0.1416 |
b3170 |
rimP |
-10.72 |
0.121991 |
191 -- 217 |
24 -- 49 |
ribosome maturation factor for 30S subunits |
|
_____________190__________________________218\n_____________|____________________________|\n5'-CUU...GUCUU________G_____UCC___UUAG____AAAAU...CAU-3'\n______________GGGGGUGG__CUUG___ACA____AGCA\n______________||:|||||__|:||___|||____||||\n______________CCUCCACC__GGAC___UGU____UCGU\n3'-UUU...CGAUU________AA____CA____CGA_____AAAAU...UCG-5'\n_____________|____________________________|\n_____________50___________________________23\n |
192 -- 198 |
42 -- 48 |
-23.9554 kcal/mol |
8.6777 kcal/mol |
4.5591 kcal/mol |
190 218@LB@ | |@LB@5'-CUU...GUCUU G UCC UUAG AAAAU...CAU-3'@LB@ GGGGGUGG CUUG ACA AGCA@LB@ ||:||||| |:|| ||| ||||@LB@ CCUCCACC GGAC UGU UCGU@LB@3'-UUU...CGAUU AA CA CGA AAAAU...UCG-5'@LB@ | |@LB@ 50 23@LB@@LB@@LB@Energy -10.72 kcal/mol@LB@Hybridization Energy -23.9554 kcal/mol@LB@Unfolding Energy - mRNA 8.6777 kcal/mol@LB@Unfolding Energy - sRNA 4.5591 kcal/mol@LB@@LB@Position - mRNA 191 -- 217@LB@Position - sRNA 24 -- 49@LB@Position Seed - mRNA 192 -- 198@LB@Position Seed - sRNA 42 -- 48@LB@ |
131 |
0.005571 |
0.1429 |
b3102 |
yqjG |
-9.67 |
0.191738 |
57 -- 77 |
24 -- 46 |
putative S-transferase |
|
_____________56_______________________78\n_____________|________________________|\n5'-GCA...UUUCU__C__A______CU__________AUUAC...GGC-3'\n______________GG_GG_UUCCUG_____GCUGGCA\n______________||_||_||||||_____|||:|||\n______________CC_CC_AAGGAC_____CGAUCGU\n3'-UUU...UUCCU__A_________CAUGU_______AAAAU...UCG-5'\n_____________|________________________|\n_____________47_______________________23\n |
71 -- 77 |
24 -- 30 |
-24.338 kcal/mol |
10.1138 kcal/mol |
4.55813 kcal/mol |
56 78@LB@ | |@LB@5'-GCA...UUUCU C A CU AUUAC...GGC-3'@LB@ GG GG UUCCUG GCUGGCA@LB@ || || |||||| |||:|||@LB@ CC CC AAGGAC CGAUCGU@LB@3'-UUU...UUCCU A CAUGU AAAAU...UCG-5'@LB@ | |@LB@ 47 23@LB@@LB@@LB@Energy -9.67 kcal/mol@LB@Hybridization Energy -24.338 kcal/mol@LB@Unfolding Energy - mRNA 10.1138 kcal/mol@LB@Unfolding Energy - sRNA 4.55813 kcal/mol@LB@@LB@Position - mRNA 57 -- 77@LB@Position - sRNA 24 -- 46@LB@Position Seed - mRNA 71 -- 77@LB@Position Seed - sRNA 24 -- 30@LB@ |