| 167 |
0.00885 |
0.1781 |
b0241 |
phoE |
-12.37 |
0.054121 |
1 -- 29 |
1 -- 31 |
outer membrane phosphoporin protein E |
b0929 b2215 b1377 |
______________1____________________________________30\n______________|____________________________________|\n___________5'-___A___________UGCGC___A_____________AAGCC...AUG-3'\n______________AGC_UGGCGUUUUGU_____GGG_________UCAGC\n______________|||_|:||:||||:|_____|||_________|||||\n______________UCG_AUCGUAAAAUA_____CCC_________AGUCG\n3'-UUU...CCAUG_______________________AAUACAAAA_____-5'\n_____________|____________________________________|\n_____________32___________________________________1\n |
9 -- 15 |
18 -- 24 |
-21.8929 kcal/mol |
8.03382 kcal/mol |
1.48722 kcal/mol |
1 30@LB@ | |@LB@ 5'- A UGCGC A AAGCC...AUG-3'@LB@ AGC UGGCGUUUUGU GGG UCAGC@LB@ ||| |:||:||||:| ||| |||||@LB@ UCG AUCGUAAAAUA CCC AGUCG@LB@3'-UUU...CCAUG AAUACAAAA -5'@LB@ | |@LB@ 32 1@LB@@LB@@LB@Energy -12.37 kcal/mol@LB@Hybridization Energy -21.8929 kcal/mol@LB@Unfolding Energy - mRNA 8.03382 kcal/mol@LB@Unfolding Energy - sRNA 1.48722 kcal/mol@LB@@LB@Position - mRNA 1 -- 29@LB@Position - sRNA 1 -- 31@LB@Position Seed - mRNA 9 -- 15@LB@Position Seed - sRNA 18 -- 24@LB@ |
| 168 |
0.00897 |
0.1795 |
b3139 |
agaC |
-13.68 |
0.025868 |
233 -- 273 |
1 -- 39 |
N-acetylgalactosamine-specific enzyme IIC component of PTS |
|
_____________232________________________________________274\n_____________|__________________________________________|\n5'-AAC...UUAUC_____CG_________U___GUUC____GAU__A________UGGAA...CGA-3'\n______________CCUGG__GC_GUUAGU_UUU____UGGG___UG_UUUUUGGC\n______________|||||__:|_|:|||:_|||____||||___||_||||::||\n______________GGACC__UG_CGAUCG_AAA____ACCC___AC_AAAAGUCG\n3'-UUU...ACCAA_____A___U______U___AU______AAU__A________-5'\n_____________|_________________________________________|\n_____________40________________________________________1\n |
267 -- 273 |
1 -- 7 |
-31.3276 kcal/mol |
13.0397 kcal/mol |
4.60651 kcal/mol |
232 274@LB@ | |@LB@5'-AAC...UUAUC CG U GUUC GAU A UGGAA...CGA-3'@LB@ CCUGG GC GUUAGU UUU UGGG UG UUUUUGGC@LB@ ||||| :| |:|||: ||| |||| || ||||::||@LB@ GGACC UG CGAUCG AAA ACCC AC AAAAGUCG@LB@3'-UUU...ACCAA A U U AU AAU A -5'@LB@ | |@LB@ 40 1@LB@@LB@@LB@Energy -13.68 kcal/mol@LB@Hybridization Energy -31.3276 kcal/mol@LB@Unfolding Energy - mRNA 13.0397 kcal/mol@LB@Unfolding Energy - sRNA 4.60651 kcal/mol@LB@@LB@Position - mRNA 233 -- 273@LB@Position - sRNA 1 -- 39@LB@Position Seed - mRNA 267 -- 273@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 171 |
0.00925 |
0.1803 |
b3832 |
rmuC |
-14.29 |
0.017807 |
191 -- 257 |
1 -- 50 |
DNA recombination protein |
|
_____________190___________________________________________________________________258\n_____________|_____________________________________________________________________|\n5'-AAA...GCGUC______CGUUG___A____UCAAUCA____UUAC_______UU_____G___________GCAA_____UGGCU...AGC-3'\n______________AGGAGG_____UGG_UUUC_______UGGU____GCAGUUA__GCGUU__GUGGG_UGUG____UUGGC\n______________||||||_____|||_||:|_______||||____:|||:||__||:||__:||||_|:||____|::||\n______________UCCUCC_____ACC_AAGG_______ACCA____UGUCGAU__CGUAA__UACCC_AUAC____AGUCG\n3'-UUU...CCGAU________________________________________________AA_____A____AAAA_____-5'\n_____________|____________________________________________________________________|\n_____________51___________________________________________________________________1\n |
225 -- 231 |
27 -- 33 |
-40.6833 kcal/mol |
21.7322 kcal/mol |
4.6634 kcal/mol |
190 258@LB@ | |@LB@5'-AAA...GCGUC CGUUG A UCAAUCA UUAC UU G GCAA UGGCU...AGC-3'@LB@ AGGAGG UGG UUUC UGGU GCAGUUA GCGUU GUGGG UGUG UUGGC@LB@ |||||| ||| ||:| |||| :|||:|| ||:|| :|||| |:|| |::||@LB@ UCCUCC ACC AAGG ACCA UGUCGAU CGUAA UACCC AUAC AGUCG@LB@3'-UUU...CCGAU AA A AAAA -5'@LB@ | |@LB@ 51 1@LB@@LB@@LB@Energy -14.29 kcal/mol@LB@Hybridization Energy -40.6833 kcal/mol@LB@Unfolding Energy - mRNA 21.7322 kcal/mol@LB@Unfolding Energy - sRNA 4.6634 kcal/mol@LB@@LB@Position - mRNA 191 -- 257@LB@Position - sRNA 1 -- 50@LB@Position Seed - mRNA 225 -- 231@LB@Position Seed - sRNA 27 -- 33@LB@ |
| 175 |
0.009651 |
0.1848 |
b2016 |
yeeZ |
-14.25 |
0.018278 |
222 -- 265 |
1 -- 50 |
putative epimerase |
|
_____________221_______________________________________________________266\n_____________|_________________________________________________________|\n5'-ACC...UUGUC___UUA________A____CA___C______________________CAC_______GCGAG...CAC-3'\n______________GGG___GGGUGGUU___GG__UGC_GCUGGCG___________AUGU___UUUCAGC\n______________:||___:|||||||___||__|:|_|||:||:___________||||___|||||||\n______________UCC___UCCACCAA___CC__AUG_CGAUCGU___________UACA___AAAGUCG\n3'-UUU...CCGAU______________GGA_______U_______AAAAUACCCAA____A_________-5'\n_____________|________________________________________________________|\n_____________51_______________________________________________________1\n |
259 -- 265 |
1 -- 7 |
-34.6896 kcal/mol |
15.7797 kcal/mol |
4.6634 kcal/mol |
221 266@LB@ | |@LB@5'-ACC...UUGUC UUA A CA C CAC GCGAG...CAC-3'@LB@ GGG GGGUGGUU GG UGC GCUGGCG AUGU UUUCAGC@LB@ :|| :||||||| || |:| |||:||: |||| |||||||@LB@ UCC UCCACCAA CC AUG CGAUCGU UACA AAAGUCG@LB@3'-UUU...CCGAU GGA U AAAAUACCCAA A -5'@LB@ | |@LB@ 51 1@LB@@LB@@LB@Energy -14.25 kcal/mol@LB@Hybridization Energy -34.6896 kcal/mol@LB@Unfolding Energy - mRNA 15.7797 kcal/mol@LB@Unfolding Energy - sRNA 4.6634 kcal/mol@LB@@LB@Position - mRNA 222 -- 265@LB@Position - sRNA 1 -- 50@LB@Position Seed - mRNA 259 -- 265@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 183 |
0.01048 |
0.1919 |
b1250 |
kch |
-17.60 |
0.001460 |
228 -- 258 |
1 -- 33 |
voltage-gated potassium channel |
|
_____________227_______________________________259\n_____________|_________________________________|\n5'-AAC...AACAA_____AACAAA_________GACCC________ACGAC...UUA-3'\n______________ACAGC______UUUAUGGGU_______UUCGGC\n______________|||||______|||||||||_______|||:||\n______________UGUCG______AAAUACCCA_______AAGUCG\n3'-UUU...GACCA_____AUCGUA_________AUACAAA______-5'\n_____________|________________________________|\n_____________34_______________________________1\n |
241 -- 247 |
14 -- 20 |
-24.8286 kcal/mol |
5.73827 kcal/mol |
1.49313 kcal/mol |
227 259@LB@ | |@LB@5'-AAC...AACAA AACAAA GACCC ACGAC...UUA-3'@LB@ ACAGC UUUAUGGGU UUCGGC@LB@ ||||| ||||||||| |||:||@LB@ UGUCG AAAUACCCA AAGUCG@LB@3'-UUU...GACCA AUCGUA AUACAAA -5'@LB@ | |@LB@ 34 1@LB@@LB@@LB@Energy -17.60 kcal/mol@LB@Hybridization Energy -24.8286 kcal/mol@LB@Unfolding Energy - mRNA 5.73827 kcal/mol@LB@Unfolding Energy - sRNA 1.49313 kcal/mol@LB@@LB@Position - mRNA 228 -- 258@LB@Position - sRNA 1 -- 33@LB@Position Seed - mRNA 241 -- 247@LB@Position Seed - sRNA 14 -- 20@LB@ |
| 185 |
0.01059 |
0.1919 |
b3856 |
mobB |
-14.40 |
0.016564 |
123 -- 150 |
1 -- 31 |
molybdopterin-guanine dinucleotide biosynthesis protein B |
|
_____________122______________________________151\n_____________|________________________________|\n5'-GUG...CGUCU________GUC____C_____A__________GAUCA...CCA-3'\n______________GGCUGGCG____AUG_GGUUG____UUUCAGC\n______________:|||:||:____|||_||||:____|||||||\n______________UCGAUCGU____UAC_CCAAU____AAAGUCG\n3'-UUU...CCAUG________AAAA_________ACAA_______-5'\n_____________|_______________________________|\n_____________32______________________________1\n |
144 -- 150 |
1 -- 7 |
-26.2194 kcal/mol |
10.3308 kcal/mol |
1.48722 kcal/mol |
122 151@LB@ | |@LB@5'-GUG...CGUCU GUC C A GAUCA...CCA-3'@LB@ GGCUGGCG AUG GGUUG UUUCAGC@LB@ :|||:||: ||| ||||: |||||||@LB@ UCGAUCGU UAC CCAAU AAAGUCG@LB@3'-UUU...CCAUG AAAA ACAA -5'@LB@ | |@LB@ 32 1@LB@@LB@@LB@Energy -14.40 kcal/mol@LB@Hybridization Energy -26.2194 kcal/mol@LB@Unfolding Energy - mRNA 10.3308 kcal/mol@LB@Unfolding Energy - sRNA 1.48722 kcal/mol@LB@@LB@Position - mRNA 123 -- 150@LB@Position - sRNA 1 -- 31@LB@Position Seed - mRNA 144 -- 150@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 199 |
0.0118 |
0.1975 |
b0077 |
ilvI |
-11.98 |
0.066447 |
6 -- 27 |
1 -- 30 |
acetolactate synthase 3 large subunit |
|
_____________5______________________________28\n_____________|______________________________|\n______5'-AAAUU_______AG_______A_____________CGAUU...UUU-3'\n______________GCU_GUA__UUGUGGG________UUCAGC\n______________|||_|:|__||:||||________||||||\n______________CGA_CGU__AAUACCC________AAGUCG\n3'-UUU...CAUGU___U___AA_______AAUACAAA______-5'\n_____________|_____________________________|\n_____________31____________________________1\n |
14 -- 20 |
15 -- 21 |
-19.3299 kcal/mol |
5.86615 kcal/mol |
1.48556 kcal/mol |
5 28@LB@ | |@LB@ 5'-AAAUU AG A CGAUU...UUU-3'@LB@ GCU GUA UUGUGGG UUCAGC@LB@ ||| |:| ||:|||| ||||||@LB@ CGA CGU AAUACCC AAGUCG@LB@3'-UUU...CAUGU U AA AAUACAAA -5'@LB@ | |@LB@ 31 1@LB@@LB@@LB@Energy -11.98 kcal/mol@LB@Hybridization Energy -19.3299 kcal/mol@LB@Unfolding Energy - mRNA 5.86615 kcal/mol@LB@Unfolding Energy - sRNA 1.48556 kcal/mol@LB@@LB@Position - mRNA 6 -- 27@LB@Position - sRNA 1 -- 30@LB@Position Seed - mRNA 14 -- 20@LB@Position Seed - sRNA 15 -- 21@LB@ |
| 24 |
0.0003458 |
0.04652 |
b2308 |
hisQ |
-16.60 |
0.003436 |
190 -- 219 |
2 -- 36 |
histidine ABC transporter permease |
|
_____________189___________________________________220\n_____________|_____________________________________|\n5'-GAU...CGACA_______GC_____GUUG___________________GUGUU...UUG-3'\n______________GG_ACAG__AGCAU____UAUGGGUU______UUCAG\n______________||_||||__|||||____||||||||______|||||\n______________CC_UGUC__UCGUA____AUACCCAA______AAGUC\n3'-UUU...AAGGA__A____GA_____AA__________UACAAA_____G-5'\n_____________|_____________________________________|\n_____________37____________________________________1\n |
208 -- 214 |
13 -- 19 |
-26.4576 kcal/mol |
8.3674 kcal/mol |
1.49503 kcal/mol |
189 220@LB@ | |@LB@5'-GAU...CGACA GC GUUG GUGUU...UUG-3'@LB@ GG ACAG AGCAU UAUGGGUU UUCAG@LB@ || |||| ||||| |||||||| |||||@LB@ CC UGUC UCGUA AUACCCAA AAGUC@LB@3'-UUU...AAGGA A GA AA UACAAA G-5'@LB@ | |@LB@ 37 1@LB@@LB@@LB@Energy -16.60 kcal/mol@LB@Hybridization Energy -26.4576 kcal/mol@LB@Unfolding Energy - mRNA 8.3674 kcal/mol@LB@Unfolding Energy - sRNA 1.49503 kcal/mol@LB@@LB@Position - mRNA 190 -- 219@LB@Position - sRNA 2 -- 36@LB@Position Seed - mRNA 208 -- 214@LB@Position Seed - sRNA 13 -- 19@LB@ |
| 53 |
0.001234 |
0.07744 |
b0884 |
infA |
-13.12 |
0.035785 |
57 -- 86 |
2 -- 40 |
translation initiation factor IF-1 |
|
_____________56_______________________________________87\n_____________|________________________________________|\n5'-UUU...UGCGC____________U____CG_____________________AGUAA...CUG-3'\n______________UUUUGGUGCGGC_UAGC___________UGUG_UUUUCGG\n______________|::||||:|:||_||||___________|:||_|||||:|\n______________AGGACCAUGUCG_AUCG___________AUAC_AAAAGUC\n3'-UUU...CACCA_________________UAAAAUACCCA____A_______G-5'\n_____________|________________________________________|\n_____________41_______________________________________1\n |
80 -- 86 |
2 -- 8 |
-28.8253 kcal/mol |
11.0921 kcal/mol |
4.60818 kcal/mol |
56 87@LB@ | |@LB@5'-UUU...UGCGC U CG AGUAA...CUG-3'@LB@ UUUUGGUGCGGC UAGC UGUG UUUUCGG@LB@ |::||||:|:|| |||| |:|| |||||:|@LB@ AGGACCAUGUCG AUCG AUAC AAAAGUC@LB@3'-UUU...CACCA UAAAAUACCCA A G-5'@LB@ | |@LB@ 41 1@LB@@LB@@LB@Energy -13.12 kcal/mol@LB@Hybridization Energy -28.8253 kcal/mol@LB@Unfolding Energy - mRNA 11.0921 kcal/mol@LB@Unfolding Energy - sRNA 4.60818 kcal/mol@LB@@LB@Position - mRNA 57 -- 86@LB@Position - sRNA 2 -- 40@LB@Position Seed - mRNA 80 -- 86@LB@Position Seed - sRNA 2 -- 8@LB@ |
| 69 |
0.001909 |
0.09081 |
b1830 |
prc |
-10.38 |
0.141777 |
185 -- 217 |
2 -- 49 |
carboxy-terminal protease for penicillin-binding protein 3 |
|
_____________184______________________________________________218\n_____________|________________________________________________|\n5'-CGA...GAAAC_______________GC__________GAAC_________________GCUUA...CGG-3'\n______________GGAGG_____CC_GG__CAG___GCAU__________AUGUUUUUUAG\n______________|||||_____||_||__|||___||||__________||||||||:||\n______________CCUCC_____GG_CC__GUC___CGUA__________UACAAAAAGUC\n3'-UUU...CGAUU_____ACCAA__A__AU___GAU____AAAUACCCAA___________G-5'\n_____________|________________________________________________|\n_____________50_______________________________________________1\n |
211 -- 217 |
2 -- 8 |
-24.9215 kcal/mol |
9.93043 kcal/mol |
4.60955 kcal/mol |
184 218@LB@ | |@LB@5'-CGA...GAAAC GC GAAC GCUUA...CGG-3'@LB@ GGAGG CC GG CAG GCAU AUGUUUUUUAG@LB@ ||||| || || ||| |||| ||||||||:||@LB@ CCUCC GG CC GUC CGUA UACAAAAAGUC@LB@3'-UUU...CGAUU ACCAA A AU GAU AAAUACCCAA G-5'@LB@ | |@LB@ 50 1@LB@@LB@@LB@Energy -10.38 kcal/mol@LB@Hybridization Energy -24.9215 kcal/mol@LB@Unfolding Energy - mRNA 9.93043 kcal/mol@LB@Unfolding Energy - sRNA 4.60955 kcal/mol@LB@@LB@Position - mRNA 185 -- 217@LB@Position - sRNA 2 -- 49@LB@Position Seed - mRNA 211 -- 217@LB@Position Seed - sRNA 2 -- 8@LB@ |
