| 13 |
6.02e-05 |
0.01556 |
b1686 |
menI |
-18.50 |
0.000608 |
260 -- 300 |
10 -- 49 |
1 4-dihydroxy-2-naphthoyl-CoA hydrolase |
|
_____________259_______________________________________300\n_____________|_________________________________________|\n5'-GGC...AACAU__U____________A___UC___UUGAACA___U___G___-3'\n______________GG_GG_GGUUCCUGG_UAU__GCU_______UAU_GGU_AUG\n______________||_||_|||||||||_||:__|||_______|||_|||_|||\n______________CC_CC_CCAAGGACC_AUG__CGA_______AUA_CCA_UAC\n3'-UUU...CGAUU__U__A_____________U____UCGUAAA___C___A___AAAAA...UCG-5'\n_____________|__________________________________________|\n_____________50_________________________________________9\n |
267 -- 273 |
35 -- 41 |
-31.9875 kcal/mol |
8.87718 kcal/mol |
4.60649 kcal/mol |
259 300@LB@ | |@LB@5'-GGC...AACAU U A UC UUGAACA U G -3'@LB@ GG GG GGUUCCUGG UAU GCU UAU GGU AUG@LB@ || || ||||||||| ||: ||| ||| ||| |||@LB@ CC CC CCAAGGACC AUG CGA AUA CCA UAC@LB@3'-UUU...CGAUU U A U UCGUAAA C A AAAAA...UCG-5'@LB@ | |@LB@ 50 9@LB@@LB@@LB@Energy -18.50 kcal/mol@LB@Hybridization Energy -31.9875 kcal/mol@LB@Unfolding Energy - mRNA 8.87718 kcal/mol@LB@Unfolding Energy - sRNA 4.60649 kcal/mol@LB@@LB@Position - mRNA 260 -- 300@LB@Position - sRNA 10 -- 49@LB@Position Seed - mRNA 267 -- 273@LB@Position Seed - sRNA 35 -- 41@LB@ |
| 194 |
0.01107 |
0.1919 |
b3288 |
fmt |
-14.89 |
0.012048 |
76 -- 114 |
11 -- 48 |
10-formyltetrahydrofolate:L-methionyl-tRNA(fMet) N-formyltransferase |
|
_____________75_______________________________________115\n_____________|________________________________________|\n5'-AUU...AGCAU___A___AUCA___________AAACUG_______A____CUGUC...UGU-3'\n______________GAG_UGG____CCUGGU_CGGC______UUUAUGG_UUAU\n______________|||_|||____||||||_|:||______|||||||_||||\n______________CUC_ACC____GGACCA_GUCG______AAAUACC_AAUA\n3'-UUU...GAUUC___C___AA________U____AUCGUA_______C____CAAAA...UCG-5'\n_____________|________________________________________|\n_____________49_______________________________________10\n |
103 -- 109 |
16 -- 22 |
-29.2084 kcal/mol |
9.72928 kcal/mol |
4.59227 kcal/mol |
75 115@LB@ | |@LB@5'-AUU...AGCAU A AUCA AAACUG A CUGUC...UGU-3'@LB@ GAG UGG CCUGGU CGGC UUUAUGG UUAU@LB@ ||| ||| |||||| |:|| ||||||| ||||@LB@ CUC ACC GGACCA GUCG AAAUACC AAUA@LB@3'-UUU...GAUUC C AA U AUCGUA C CAAAA...UCG-5'@LB@ | |@LB@ 49 10@LB@@LB@@LB@Energy -14.89 kcal/mol@LB@Hybridization Energy -29.2084 kcal/mol@LB@Unfolding Energy - mRNA 9.72928 kcal/mol@LB@Unfolding Energy - sRNA 4.59227 kcal/mol@LB@@LB@Position - mRNA 76 -- 114@LB@Position - sRNA 11 -- 48@LB@Position Seed - mRNA 103 -- 109@LB@Position Seed - sRNA 16 -- 22@LB@ |
| 57 |
0.001403 |
0.08147 |
b0948 |
rlmL |
-12.46 |
0.051711 |
286 -- 300 |
33 -- 47 |
23S rRNA m(2)G2445 and m(7)G2069 methyltransferases SAM-dependent |
|
_____________285____________300\n_____________|______________|\n5'-GAC...AUGCC_________AG____-3'\n______________AGGUGGUUC__GGUG\n______________|||||||||__|||:\n______________UCCACCAAG__CCAU\n3'-UUU...AUUCC_________GA____GUCGA...UCG-5'\n_____________|_______________|\n_____________48______________32\n |
288 -- 294 |
39 -- 45 |
-21.3846 kcal/mol |
5.67574 kcal/mol |
3.25146 kcal/mol |
285 300@LB@ | |@LB@5'-GAC...AUGCC AG -3'@LB@ AGGUGGUUC GGUG@LB@ ||||||||| |||:@LB@ UCCACCAAG CCAU@LB@3'-UUU...AUUCC GA GUCGA...UCG-5'@LB@ | |@LB@ 48 32@LB@@LB@@LB@Energy -12.46 kcal/mol@LB@Hybridization Energy -21.3846 kcal/mol@LB@Unfolding Energy - mRNA 5.67574 kcal/mol@LB@Unfolding Energy - sRNA 3.25146 kcal/mol@LB@@LB@Position - mRNA 286 -- 300@LB@Position - sRNA 33 -- 47@LB@Position Seed - mRNA 288 -- 294@LB@Position Seed - sRNA 39 -- 45@LB@ |
| 95 |
0.003283 |
0.1162 |
b3298 |
rpsM |
-13.37 |
0.031144 |
190 -- 221 |
22 -- 50 |
30S ribosomal subunit protein S13 |
|
_____________189_________________________________222\n_____________|___________________________________|\n5'-GUC...AUAGU_____UGCAUA____C____________A______AACAU...UCC-3'\n______________AGGAG______GUGG__CC__GUAUAGC_GGCAUU\n______________|||||______||||__||__|||:|||_:|||||\n______________UCCUC______CACC__GG__CAUGUCG_UCGUAA\n3'-UUU...CCGAU_______________AA__AC_______A______AAUAC...UCG-5'\n_____________|___________________________________|\n_____________51__________________________________21\n |
208 -- 214 |
29 -- 35 |
-26.0998 kcal/mol |
8.11911 kcal/mol |
4.61397 kcal/mol |
189 222@LB@ | |@LB@5'-GUC...AUAGU UGCAUA C A AACAU...UCC-3'@LB@ AGGAG GUGG CC GUAUAGC GGCAUU@LB@ ||||| |||| || |||:||| :|||||@LB@ UCCUC CACC GG CAUGUCG UCGUAA@LB@3'-UUU...CCGAU AA AC A AAUAC...UCG-5'@LB@ | |@LB@ 51 21@LB@@LB@@LB@Energy -13.37 kcal/mol@LB@Hybridization Energy -26.0998 kcal/mol@LB@Unfolding Energy - mRNA 8.11911 kcal/mol@LB@Unfolding Energy - sRNA 4.61397 kcal/mol@LB@@LB@Position - mRNA 190 -- 221@LB@Position - sRNA 22 -- 50@LB@Position Seed - mRNA 208 -- 214@LB@Position Seed - sRNA 29 -- 35@LB@ |
| 49 |
0.001147 |
0.07744 |
b3039 |
ygiD |
-13.27 |
0.032900 |
280 -- 298 |
15 -- 33 |
4 5- DOPA-extradiol-dioxygenase |
|
_____________279_________________299\n_____________|___________________|\n5'-ACG...UACCC__________GAAGU____GA-3'\n______________GCAGCUGGCA_____UGGG\n______________:|||||:|||_____||||\n______________UGUCGAUCGU_____ACCC\n3'-UUU...GACCA__________AAAAU____AAUAC...UCG-5'\n_____________|___________________|\n_____________34__________________14\n |
283 -- 289 |
24 -- 30 |
-23.43 kcal/mol |
8.71058 kcal/mol |
1.44754 kcal/mol |
279 299@LB@ | |@LB@5'-ACG...UACCC GAAGU GA-3'@LB@ GCAGCUGGCA UGGG@LB@ :|||||:||| ||||@LB@ UGUCGAUCGU ACCC@LB@3'-UUU...GACCA AAAAU AAUAC...UCG-5'@LB@ | |@LB@ 34 14@LB@@LB@@LB@Energy -13.27 kcal/mol@LB@Hybridization Energy -23.43 kcal/mol@LB@Unfolding Energy - mRNA 8.71058 kcal/mol@LB@Unfolding Energy - sRNA 1.44754 kcal/mol@LB@@LB@Position - mRNA 280 -- 298@LB@Position - sRNA 15 -- 33@LB@Position Seed - mRNA 283 -- 289@LB@Position Seed - sRNA 24 -- 30@LB@ |
| 118 |
0.00496 |
0.1407 |
b1128 |
roxA |
-15.27 |
0.009267 |
80 -- 105 |
22 -- 49 |
50S ribosomal protein L16 arginine hydroxylase; 2-oxoglutarate oxygenase |
|
_____________79___________________________106\n_____________|____________________________|\n5'-UGG...CGGAU_______A_____________C______CUGCG...ACC-3'\n______________GGAGGUG_UUUUUGGU_C_GC_AGCAUU\n______________|||||||_||::||||_|_||_||||||\n______________CCUCCAC_AAGGACCA_G_CG_UCGUAA\n3'-UUU...CGAUU_______C________U_U__A______AAUAC...UCG-5'\n_____________|____________________________|\n_____________50___________________________21\n |
80 -- 86 |
43 -- 49 |
-30.554 kcal/mol |
10.7239 kcal/mol |
4.55979 kcal/mol |
79 106@LB@ | |@LB@5'-UGG...CGGAU A C CUGCG...ACC-3'@LB@ GGAGGUG UUUUUGGU C GC AGCAUU@LB@ ||||||| ||::|||| | || ||||||@LB@ CCUCCAC AAGGACCA G CG UCGUAA@LB@3'-UUU...CGAUU C U U A AAUAC...UCG-5'@LB@ | |@LB@ 50 21@LB@@LB@@LB@Energy -15.27 kcal/mol@LB@Hybridization Energy -30.554 kcal/mol@LB@Unfolding Energy - mRNA 10.7239 kcal/mol@LB@Unfolding Energy - sRNA 4.55979 kcal/mol@LB@@LB@Position - mRNA 80 -- 105@LB@Position - sRNA 22 -- 49@LB@Position Seed - mRNA 80 -- 86@LB@Position Seed - sRNA 43 -- 49@LB@ |
| 8 |
1.749e-05 |
0.007346 |
b3294 |
rplQ |
-17.07 |
0.002316 |
5 -- 20 |
29 -- 46 |
50S ribosomal subunit protein L17 |
|
_____________4__________________21\n_____________|__________________|\n_______5'-UAUC____A_____________GUACC...UCA-3'\n______________GGUG___UCUGGUACAGC\n______________||||___:||||||||||\n______________CCAC___GGACCAUGUCG\n3'-UUU...UUCCU____CAA___________AUCGU...UCG-5'\n_____________|__________________|\n_____________47_________________28\n |
14 -- 20 |
29 -- 35 |
-24.8218 kcal/mol |
3.44934 kcal/mol |
4.30059 kcal/mol |
4 21@LB@ | |@LB@ 5'-UAUC A GUACC...UCA-3'@LB@ GGUG UCUGGUACAGC@LB@ |||| :||||||||||@LB@ CCAC GGACCAUGUCG@LB@3'-UUU...UUCCU CAA AUCGU...UCG-5'@LB@ | |@LB@ 47 28@LB@@LB@@LB@Energy -17.07 kcal/mol@LB@Hybridization Energy -24.8218 kcal/mol@LB@Unfolding Energy - mRNA 3.44934 kcal/mol@LB@Unfolding Energy - sRNA 4.30059 kcal/mol@LB@@LB@Position - mRNA 5 -- 20@LB@Position - sRNA 29 -- 46@LB@Position Seed - mRNA 14 -- 20@LB@Position Seed - sRNA 29 -- 35@LB@ |
| 174 |
0.009477 |
0.1831 |
b3186 |
rplU |
-11.27 |
0.094314 |
2 -- 27 |
9 -- 34 |
50S ribosomal subunit protein L21 |
|
_____________1____________________________28\n_____________|____________________________|\n__________5'-U_________G_A_____A____GAU___ACUGA...UUG-3'\n______________UAUGGUUAG_A___UAU_GGGU___UGU\n______________||::|:|||_|___|||_||||___|||\n______________AUGUCGAUC_U___AUA_CCCA___ACA\n3'-UUU...GGACC_________G_AAA________AU____AAAAGUCG-5'\n_____________|____________________________|\n_____________35___________________________8\n |
4 -- 10 |
26 -- 32 |
-16.432 kcal/mol |
3.67439 kcal/mol |
1.48697 kcal/mol |
1 28@LB@ | |@LB@ 5'-U G A A GAU ACUGA...UUG-3'@LB@ UAUGGUUAG A UAU GGGU UGU@LB@ ||::|:||| | ||| |||| |||@LB@ AUGUCGAUC U AUA CCCA ACA@LB@3'-UUU...GGACC G AAA AU AAAAGUCG-5'@LB@ | |@LB@ 35 8@LB@@LB@@LB@Energy -11.27 kcal/mol@LB@Hybridization Energy -16.432 kcal/mol@LB@Unfolding Energy - mRNA 3.67439 kcal/mol@LB@Unfolding Energy - sRNA 1.48697 kcal/mol@LB@@LB@Position - mRNA 2 -- 27@LB@Position - sRNA 9 -- 34@LB@Position Seed - mRNA 4 -- 10@LB@Position Seed - sRNA 26 -- 32@LB@ |
| 34 |
0.0006341 |
0.06268 |
b3312 |
rpmC |
-15.21 |
0.009642 |
105 -- 128 |
25 -- 49 |
50S ribosomal subunit protein L29 |
|
_____________104________________________129\n_____________|__________________________|\n5'-AAA...GAAAU___C____________A_G_______CCGUG...CAA-3'\n______________GGA_GGU_GUUCC_GG_A_AGCUGGC\n______________|||_|||_|||||_||_|_||||:||\n______________CCU_CCA_CAAGG_CC_U_UCGAUCG\n3'-UUU...CGAUU_______C_____A__A_G_______UAAAA...UCG-5'\n_____________|__________________________|\n_____________50_________________________24\n |
122 -- 128 |
25 -- 31 |
-29.6215 kcal/mol |
9.85059 kcal/mol |
4.5577 kcal/mol |
104 129@LB@ | |@LB@5'-AAA...GAAAU C A G CCGUG...CAA-3'@LB@ GGA GGU GUUCC GG A AGCUGGC@LB@ ||| ||| ||||| || | ||||:||@LB@ CCU CCA CAAGG CC U UCGAUCG@LB@3'-UUU...CGAUU C A A G UAAAA...UCG-5'@LB@ | |@LB@ 50 24@LB@@LB@@LB@Energy -15.21 kcal/mol@LB@Hybridization Energy -29.6215 kcal/mol@LB@Unfolding Energy - mRNA 9.85059 kcal/mol@LB@Unfolding Energy - sRNA 4.5577 kcal/mol@LB@@LB@Position - mRNA 105 -- 128@LB@Position - sRNA 25 -- 49@LB@Position Seed - mRNA 122 -- 128@LB@Position Seed - sRNA 25 -- 31@LB@ |
| 154 |
0.007726 |
0.1686 |
b4203 |
rplI |
-9.34 |
0.218324 |
285 -- 297 |
29 -- 41 |
50S ribosomal subunit protein L9 |
|
_____________284___________298\n_____________|_____________|\n5'-AAA...GUAAC__________C__AGG-3'\n______________UUCCUGGUAC_GC\n______________||||||||||_||\n______________AAGGACCAUG_CG\n3'-UUU...CCACC__________U__AUCGU...UCG-5'\n_____________|_____________|\n_____________42____________28\n |
288 -- 294 |
32 -- 38 |
-19.8737 kcal/mol |
6.23655 kcal/mol |
4.29727 kcal/mol |
284 298@LB@ | |@LB@5'-AAA...GUAAC C AGG-3'@LB@ UUCCUGGUAC GC@LB@ |||||||||| ||@LB@ AAGGACCAUG CG@LB@3'-UUU...CCACC U AUCGU...UCG-5'@LB@ | |@LB@ 42 28@LB@@LB@@LB@Energy -9.34 kcal/mol@LB@Hybridization Energy -19.8737 kcal/mol@LB@Unfolding Energy - mRNA 6.23655 kcal/mol@LB@Unfolding Energy - sRNA 4.29727 kcal/mol@LB@@LB@Position - mRNA 285 -- 297@LB@Position - sRNA 29 -- 41@LB@Position Seed - mRNA 288 -- 294@LB@Position Seed - sRNA 32 -- 38@LB@ |
