45 |
0.001037 |
0.07744 |
b0857 |
potI |
-11.49 |
0.084883 |
37 -- 88 |
3 -- 46 |
putrescine ABC transporter permease |
|
_____________36______________________________________________________89\n_____________|_______________________________________________________|\n5'-CCG...UGCUC_________C________AUCAUGAUCGGGC____GC_____CAAGA________AUAAC...AUU-3'\n______________GGUGG__CC_GG_ACAGC_____________GCGU__UAUGG_____GUUUUUCA\n______________|||||__||_||_|||||_____________||:|__|||||_____||||||||\n______________CCACC__GG_CC_UGUCG_____________CGUA__AUACC_____CAAAAAGU\n3'-UUU...UUCCU_____AA__A__A_____AU_______________AA_____CAAUA________CG-5'\n_____________|_______________________________________________________|\n_____________47______________________________________________________2\n |
82 -- 88 |
3 -- 9 |
-33.7321 kcal/mol |
17.6344 kcal/mol |
4.60931 kcal/mol |
36 89@LB@ | |@LB@5'-CCG...UGCUC C AUCAUGAUCGGGC GC CAAGA AUAAC...AUU-3'@LB@ GGUGG CC GG ACAGC GCGU UAUGG GUUUUUCA@LB@ ||||| || || ||||| ||:| ||||| ||||||||@LB@ CCACC GG CC UGUCG CGUA AUACC CAAAAAGU@LB@3'-UUU...UUCCU AA A A AU AA CAAUA CG-5'@LB@ | |@LB@ 47 2@LB@@LB@@LB@Energy -11.49 kcal/mol@LB@Hybridization Energy -33.7321 kcal/mol@LB@Unfolding Energy - mRNA 17.6344 kcal/mol@LB@Unfolding Energy - sRNA 4.60931 kcal/mol@LB@@LB@Position - mRNA 37 -- 88@LB@Position - sRNA 3 -- 46@LB@Position Seed - mRNA 82 -- 88@LB@Position Seed - sRNA 3 -- 9@LB@ |
122 |
0.005134 |
0.1413 |
b0437 |
clpP |
-11.97 |
0.066798 |
162 -- 180 |
3 -- 36 |
proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine proteases |
|
_____________161________________________________181\n_____________|__________________________________|\n5'-CCA...CAAUC________A_________________________AUUUU...UCU-3'\n______________GGUACAGC_GGU_______________UUUUUCA\n______________||||||||_:|:_______________|||||||\n______________CCAUGUCG_UCG_______________AAAAAGU\n3'-UUU...AAGGA________A___UAAAAUACCCAAUAC_______CG-5'\n_____________|__________________________________|\n_____________37_________________________________2\n |
174 -- 180 |
3 -- 9 |
-16.9285 kcal/mol |
3.46571 kcal/mol |
1.49503 kcal/mol |
161 181@LB@ | |@LB@5'-CCA...CAAUC A AUUUU...UCU-3'@LB@ GGUACAGC GGU UUUUUCA@LB@ |||||||| :|: |||||||@LB@ CCAUGUCG UCG AAAAAGU@LB@3'-UUU...AAGGA A UAAAAUACCCAAUAC CG-5'@LB@ | |@LB@ 37 2@LB@@LB@@LB@Energy -11.97 kcal/mol@LB@Hybridization Energy -16.9285 kcal/mol@LB@Unfolding Energy - mRNA 3.46571 kcal/mol@LB@Unfolding Energy - sRNA 1.49503 kcal/mol@LB@@LB@Position - mRNA 162 -- 180@LB@Position - sRNA 3 -- 36@LB@Position Seed - mRNA 174 -- 180@LB@Position Seed - sRNA 3 -- 9@LB@ |
156 |
0.007969 |
0.1694 |
b4025 |
pgi |
-9.69 |
0.190093 |
4 -- 41 |
3 -- 36 |
glucosephosphate isomerase |
|
_____________3_______________________________________42\n_____________|_______________________________________|\n________5'-AGC__G_______U__ACG______GUC___CGGA_______UCCAC...AAG-3'\n______________GG_GCGGUUG_CA____AUGGG___AUG____UUUUUCA\n______________||_:|:|:|:_||____|||||___|||____|||||||\n______________CC_UGUCGAU_GU____UACCC___UAC____AAAAAGU\n3'-UUU...AAGGA__A_______C__AAAA_____AA_______________CG-5'\n_____________|_______________________________________|\n_____________37______________________________________2\n |
35 -- 41 |
3 -- 9 |
-21.0745 kcal/mol |
9.8922 kcal/mol |
1.49503 kcal/mol |
3 42@LB@ | |@LB@ 5'-AGC G U ACG GUC CGGA UCCAC...AAG-3'@LB@ GG GCGGUUG CA AUGGG AUG UUUUUCA@LB@ || :|:|:|: || ||||| ||| |||||||@LB@ CC UGUCGAU GU UACCC UAC AAAAAGU@LB@3'-UUU...AAGGA A C AAAA AA CG-5'@LB@ | |@LB@ 37 2@LB@@LB@@LB@Energy -9.69 kcal/mol@LB@Hybridization Energy -21.0745 kcal/mol@LB@Unfolding Energy - mRNA 9.8922 kcal/mol@LB@Unfolding Energy - sRNA 1.49503 kcal/mol@LB@@LB@Position - mRNA 4 -- 41@LB@Position - sRNA 3 -- 36@LB@Position Seed - mRNA 35 -- 41@LB@Position Seed - sRNA 3 -- 9@LB@ |
19 |
0.000151 |
0.02671 |
b2142 |
yohK |
-18.84 |
0.000427 |
90 -- 130 |
4 -- 49 |
LrgB family inner membrane protein |
|
_____________89______________________________________________131\n_____________|_______________________________________________|\n5'-GUA...GGCCC__UA____U_____________C____CGCU______G_________UGGUG...CGU-3'\n______________GG__GUGG_UUCCU_GUGCAGU_AGUA_______GGU___GUUUUUC\n______________||__||||_|||||_||:|||:_||:|_______|||___|||||||\n______________CC__CACC_AAGGA_CAUGUCG_UCGU_______CCA___CAAAAAG\n3'-UUU...CGAUU__UC__________C_______A____AAAAUAC___AUA_______UCG-5'\n_____________|_______________________________________________|\n_____________50______________________________________________3\n |
124 -- 130 |
4 -- 10 |
-35.205 kcal/mol |
11.7562 kcal/mol |
4.60954 kcal/mol |
89 131@LB@ | |@LB@5'-GUA...GGCCC UA U C CGCU G UGGUG...CGU-3'@LB@ GG GUGG UUCCU GUGCAGU AGUA GGU GUUUUUC@LB@ || |||| ||||| ||:|||: ||:| ||| |||||||@LB@ CC CACC AAGGA CAUGUCG UCGU CCA CAAAAAG@LB@3'-UUU...CGAUU UC C A AAAAUAC AUA UCG-5'@LB@ | |@LB@ 50 3@LB@@LB@@LB@Energy -18.84 kcal/mol@LB@Hybridization Energy -35.205 kcal/mol@LB@Unfolding Energy - mRNA 11.7562 kcal/mol@LB@Unfolding Energy - sRNA 4.60954 kcal/mol@LB@@LB@Position - mRNA 90 -- 130@LB@Position - sRNA 4 -- 49@LB@Position Seed - mRNA 124 -- 130@LB@Position Seed - sRNA 4 -- 10@LB@ |
60 |
0.001479 |
0.08283 |
b1886 |
tar |
-8.65 |
0.283085 |
258 -- 290 |
4 -- 38 |
methyl-accepting chemotaxis protein II |
|
_____________257__________________________________291\n_____________|____________________________________|\n5'-UGC...UCGCA___U______________CC___CAGUC________UCUUC...UUC-3'\n______________CUG_UACAGCU__UAUUU___GG_____UGUUUUUU\n______________|||_|||||||__:||||___||_____|||||||:\n______________GAC_AUGUCGA__GUAAA___CC_____ACAAAAAG\n3'-UUU...CCAAG___C_______UC_____AUA__CAAU_________UCG-5'\n_____________|____________________________________|\n_____________39___________________________________3\n |
284 -- 290 |
4 -- 10 |
-19.1357 kcal/mol |
5.94997 kcal/mol |
4.53981 kcal/mol |
257 291@LB@ | |@LB@5'-UGC...UCGCA U CC CAGUC UCUUC...UUC-3'@LB@ CUG UACAGCU UAUUU GG UGUUUUUU@LB@ ||| ||||||| :|||| || |||||||:@LB@ GAC AUGUCGA GUAAA CC ACAAAAAG@LB@3'-UUU...CCAAG C UC AUA CAAU UCG-5'@LB@ | |@LB@ 39 3@LB@@LB@@LB@Energy -8.65 kcal/mol@LB@Hybridization Energy -19.1357 kcal/mol@LB@Unfolding Energy - mRNA 5.94997 kcal/mol@LB@Unfolding Energy - sRNA 4.53981 kcal/mol@LB@@LB@Position - mRNA 258 -- 290@LB@Position - sRNA 4 -- 38@LB@Position Seed - mRNA 284 -- 290@LB@Position Seed - sRNA 4 -- 10@LB@ |
97 |
0.003376 |
0.117 |
b2145 |
yeiS |
-12.83 |
0.042234 |
207 -- 237 |
4 -- 35 |
DUF2542 family protein |
|
_____________206_______________________________238\n_____________|_________________________________|\n5'-AUG...UGGAU___________U______C_____CC_______UCCUU...AUA-3'\n______________GUACAGC_AGU_UUUUGU__GUUG__GUUUUUU\n______________|||||||_||:_||||:|__|||:__||||||:\n______________CAUGUCG_UCG_AAAAUA__CAAU__CAAAAAG\n3'-UUU...AGGAC_______A___U______CC____A________UCG-5'\n_____________|_________________________________|\n_____________36________________________________3\n |
231 -- 237 |
4 -- 10 |
-21.2811 kcal/mol |
6.9566 kcal/mol |
1.49488 kcal/mol |
206 238@LB@ | |@LB@5'-AUG...UGGAU U C CC UCCUU...AUA-3'@LB@ GUACAGC AGU UUUUGU GUUG GUUUUUU@LB@ ||||||| ||: ||||:| |||: ||||||:@LB@ CAUGUCG UCG AAAAUA CAAU CAAAAAG@LB@3'-UUU...AGGAC A U CC A UCG-5'@LB@ | |@LB@ 36 3@LB@@LB@@LB@Energy -12.83 kcal/mol@LB@Hybridization Energy -21.2811 kcal/mol@LB@Unfolding Energy - mRNA 6.9566 kcal/mol@LB@Unfolding Energy - sRNA 1.49488 kcal/mol@LB@@LB@Position - mRNA 207 -- 237@LB@Position - sRNA 4 -- 35@LB@Position Seed - mRNA 231 -- 237@LB@Position Seed - sRNA 4 -- 10@LB@ |
117 |
0.004938 |
0.1407 |
b2560 |
pgpC |
-11.09 |
0.102961 |
189 -- 233 |
4 -- 51 |
phosphatidylglycerophosphatase C membrane bound |
|
_____________188_________________________________________________234\n_____________|___________________________________________________|\n5'-UCG...GUCCA______UA__________CA__UCACG_____CG_________________GACUU...GCC-3'\n______________GAGGAG__UGGUU__UGG__AC_____AGCGU__UGUGG____UGUUUUUU\n______________:|||||__|||||__|||__||_____|||:|__|:|||____|||||||:\n______________UUCCUC__ACCAA__ACC__UG_____UCGUA__AUACC____ACAAAAAG\n3'-UUU...UCCGA______C______GG___A___UCGA______AA_____CAAU________UCG-5'\n_____________|___________________________________________________|\n_____________52__________________________________________________3\n |
227 -- 233 |
4 -- 10 |
-30.0966 kcal/mol |
14.318 kcal/mol |
4.69283 kcal/mol |
188 234@LB@ | |@LB@5'-UCG...GUCCA UA CA UCACG CG GACUU...GCC-3'@LB@ GAGGAG UGGUU UGG AC AGCGU UGUGG UGUUUUUU@LB@ :||||| ||||| ||| || |||:| |:||| |||||||:@LB@ UUCCUC ACCAA ACC UG UCGUA AUACC ACAAAAAG@LB@3'-UUU...UCCGA C GG A UCGA AA CAAU UCG-5'@LB@ | |@LB@ 52 3@LB@@LB@@LB@Energy -11.09 kcal/mol@LB@Hybridization Energy -30.0966 kcal/mol@LB@Unfolding Energy - mRNA 14.318 kcal/mol@LB@Unfolding Energy - sRNA 4.69283 kcal/mol@LB@@LB@Position - mRNA 189 -- 233@LB@Position - sRNA 4 -- 51@LB@Position Seed - mRNA 227 -- 233@LB@Position Seed - sRNA 4 -- 10@LB@ |
96 |
0.003358 |
0.117 |
b3367 |
nirC |
-13.97 |
0.021706 |
56 -- 81 |
6 -- 37 |
nitrite transporter |
|
_____________55_________________________________82\n_____________|__________________________________|\n5'-AUG...CGGCG___________C______________A_______AACGG...UGG-3'\n______________UGGUGCAGCUG_GC________GGUU_AUGUUUU\n______________||||:|||||:_||________||||_|||||||\n______________ACCAUGUCGAU_CG________CCAA_UACAAAA\n3'-UUU...CAAGG______________UAAAAUAC____________AGUCG-5'\n_____________|__________________________________|\n_____________38_________________________________5\n |
75 -- 81 |
6 -- 12 |
-26.6239 kcal/mol |
9.95316 kcal/mol |
2.70019 kcal/mol |
55 82@LB@ | |@LB@5'-AUG...CGGCG C A AACGG...UGG-3'@LB@ UGGUGCAGCUG GC GGUU AUGUUUU@LB@ ||||:|||||: || |||| |||||||@LB@ ACCAUGUCGAU CG CCAA UACAAAA@LB@3'-UUU...CAAGG UAAAAUAC AGUCG-5'@LB@ | |@LB@ 38 5@LB@@LB@@LB@Energy -13.97 kcal/mol@LB@Hybridization Energy -26.6239 kcal/mol@LB@Unfolding Energy - mRNA 9.95316 kcal/mol@LB@Unfolding Energy - sRNA 2.70019 kcal/mol@LB@@LB@Position - mRNA 56 -- 81@LB@Position - sRNA 6 -- 37@LB@Position Seed - mRNA 75 -- 81@LB@Position Seed - sRNA 6 -- 12@LB@ |
119 |
0.005024 |
0.1407 |
b2342 |
fadI |
-9.59 |
0.197573 |
199 -- 214 |
6 -- 21 |
beta-ketoacyl-CoA thiolase anaerobic subunit |
|
_____________198______________215\n_____________|________________|\n5'-UCC...GAGUG________CAG_____ACCGC...AUG-3'\n______________UUAUGGGU___GUUUU\n______________||||||||___|||||\n______________AAUACCCA___CAAAA\n3'-UUU...CGUAA________AUA_____AGUCG-5'\n_____________|________________|\n_____________22_______________5\n |
200 -- 206 |
14 -- 20 |
-13.0434 kcal/mol |
3.24348 kcal/mol |
0.208077 kcal/mol |
198 215@LB@ | |@LB@5'-UCC...GAGUG CAG ACCGC...AUG-3'@LB@ UUAUGGGU GUUUU@LB@ |||||||| |||||@LB@ AAUACCCA CAAAA@LB@3'-UUU...CGUAA AUA AGUCG-5'@LB@ | |@LB@ 22 5@LB@@LB@@LB@Energy -9.59 kcal/mol@LB@Hybridization Energy -13.0434 kcal/mol@LB@Unfolding Energy - mRNA 3.24348 kcal/mol@LB@Unfolding Energy - sRNA 0.208077 kcal/mol@LB@@LB@Position - mRNA 199 -- 214@LB@Position - sRNA 6 -- 21@LB@Position Seed - mRNA 200 -- 206@LB@Position Seed - sRNA 14 -- 20@LB@ |
191 |
0.01094 |
0.1919 |
b3554 |
yiaF |
-11.44 |
0.087025 |
256 -- 281 |
6 -- 37 |
barrier effect co-colonization resistance factor; DUF3053 family lipoprotein |
|
_____________255______________________________282\n_____________|________________________________|\n5'-AAU...AUUAA_____________CUGA_______________GAUAA...AGC-3'\n______________UGGU__AGUUAGC_____GUGGGU___GUUUU\n______________||||__||:||||_____:|||||___|||||\n______________ACCA__UCGAUCG_____UACCCA___CAAAA\n3'-UUU...CAAGG____UG_______UAAAA______AUA_____AGUCG-5'\n_____________|________________________________|\n_____________38_______________________________5\n |
260 -- 266 |
25 -- 31 |
-21.639 kcal/mol |
7.5014 kcal/mol |
2.70019 kcal/mol |
255 282@LB@ | |@LB@5'-AAU...AUUAA CUGA GAUAA...AGC-3'@LB@ UGGU AGUUAGC GUGGGU GUUUU@LB@ |||| ||:|||| :||||| |||||@LB@ ACCA UCGAUCG UACCCA CAAAA@LB@3'-UUU...CAAGG UG UAAAA AUA AGUCG-5'@LB@ | |@LB@ 38 5@LB@@LB@@LB@Energy -11.44 kcal/mol@LB@Hybridization Energy -21.639 kcal/mol@LB@Unfolding Energy - mRNA 7.5014 kcal/mol@LB@Unfolding Energy - sRNA 2.70019 kcal/mol@LB@@LB@Position - mRNA 256 -- 281@LB@Position - sRNA 6 -- 37@LB@Position Seed - mRNA 260 -- 266@LB@Position Seed - sRNA 25 -- 31@LB@ |