| 177 |
0.009845 |
0.1869 |
b3241 |
aaeA |
-6.34 |
0.565531 |
229 -- 235 |
29 -- 35 |
p-hydroxybenzoic acid efflux system component |
|
_____________228_____236\n_____________|_______|\n5'-UCC...CUCCC_______CAUCA...CCG-3'\n______________GUACGGC\n______________||||:||\n______________CAUGUCG\n3'-UUU...AGGAC_______AUCGU...UCG-5'\n_____________|_______|\n_____________36______28\n |
229 -- 235 |
29 -- 35 |
-10.2139 kcal/mol |
2.71034 kcal/mol |
1.16584 kcal/mol |
228 236@LB@ | |@LB@5'-UCC...CUCCC CAUCA...CCG-3'@LB@ GUACGGC@LB@ ||||:||@LB@ CAUGUCG@LB@3'-UUU...AGGAC AUCGU...UCG-5'@LB@ | |@LB@ 36 28@LB@@LB@@LB@Energy -6.34 kcal/mol@LB@Hybridization Energy -10.2139 kcal/mol@LB@Unfolding Energy - mRNA 2.71034 kcal/mol@LB@Unfolding Energy - sRNA 1.16584 kcal/mol@LB@@LB@Position - mRNA 229 -- 235@LB@Position - sRNA 29 -- 35@LB@Position Seed - mRNA 229 -- 235@LB@Position Seed - sRNA 29 -- 35@LB@ |
| 180 |
0.01039 |
0.1919 |
b1778 |
msrB |
-9.69 |
0.189810 |
88 -- 95 |
29 -- 36 |
methionine sulfoxide reductase B |
|
_____________87_______96\n_____________|________|\n5'-CUU...AUUUA________CAUUU...GUC-3'\n______________GGUGCAGC\n______________|||:||||\n______________CCAUGUCG\n3'-UUU...AAGGA________AUCGU...UCG-5'\n_____________|________|\n_____________37_______28\n |
89 -- 95 |
29 -- 35 |
-13.558 kcal/mol |
2.69806 kcal/mol |
1.16901 kcal/mol |
87 96@LB@ | |@LB@5'-CUU...AUUUA CAUUU...GUC-3'@LB@ GGUGCAGC@LB@ |||:||||@LB@ CCAUGUCG@LB@3'-UUU...AAGGA AUCGU...UCG-5'@LB@ | |@LB@ 37 28@LB@@LB@@LB@Energy -9.69 kcal/mol@LB@Hybridization Energy -13.558 kcal/mol@LB@Unfolding Energy - mRNA 2.69806 kcal/mol@LB@Unfolding Energy - sRNA 1.16901 kcal/mol@LB@@LB@Position - mRNA 88 -- 95@LB@Position - sRNA 29 -- 36@LB@Position Seed - mRNA 89 -- 95@LB@Position Seed - sRNA 29 -- 35@LB@ |
| 190 |
0.0109 |
0.1919 |
b2749 |
ygbE |
-11.00 |
0.107048 |
99 -- 107 |
29 -- 37 |
DUF3561 family inner membrane protein |
|
_____________98________108\n_____________|_________|\n5'-UGC...AAAUU_________AAUUA...UCU-3'\n______________UGGUACAGC\n______________|||||||||\n______________ACCAUGUCG\n3'-UUU...CAAGG_________AUCGU...UCG-5'\n_____________|_________|\n_____________38________28\n |
101 -- 107 |
29 -- 35 |
-15.5774 kcal/mol |
2.20256 kcal/mol |
2.37218 kcal/mol |
98 108@LB@ | |@LB@5'-UGC...AAAUU AAUUA...UCU-3'@LB@ UGGUACAGC@LB@ |||||||||@LB@ ACCAUGUCG@LB@3'-UUU...CAAGG AUCGU...UCG-5'@LB@ | |@LB@ 38 28@LB@@LB@@LB@Energy -11.00 kcal/mol@LB@Hybridization Energy -15.5774 kcal/mol@LB@Unfolding Energy - mRNA 2.20256 kcal/mol@LB@Unfolding Energy - sRNA 2.37218 kcal/mol@LB@@LB@Position - mRNA 99 -- 107@LB@Position - sRNA 29 -- 37@LB@Position Seed - mRNA 101 -- 107@LB@Position Seed - sRNA 29 -- 35@LB@ |
| 121 |
0.005123 |
0.1413 |
b1735 |
chbR |
-8.25 |
0.324466 |
38 -- 46 |
30 -- 38 |
repressor of chb operon for N N'-diacetylchitobiose utilization |
|
_____________37________47\n_____________|_________|\n5'-GAU...CGCAU_________ACGAA...CUG-3'\n______________CUGGUACAG\n______________|||||||||\n______________GACCAUGUC\n3'-UUU...CCAAG_________GAUCG...UCG-5'\n_____________|_________|\n_____________39________29\n |
40 -- 46 |
30 -- 36 |
-15.5432 kcal/mol |
3.07825 kcal/mol |
4.2107 kcal/mol |
37 47@LB@ | |@LB@5'-GAU...CGCAU ACGAA...CUG-3'@LB@ CUGGUACAG@LB@ |||||||||@LB@ GACCAUGUC@LB@3'-UUU...CCAAG GAUCG...UCG-5'@LB@ | |@LB@ 39 29@LB@@LB@@LB@Energy -8.25 kcal/mol@LB@Hybridization Energy -15.5432 kcal/mol@LB@Unfolding Energy - mRNA 3.07825 kcal/mol@LB@Unfolding Energy - sRNA 4.2107 kcal/mol@LB@@LB@Position - mRNA 38 -- 46@LB@Position - sRNA 30 -- 38@LB@Position Seed - mRNA 40 -- 46@LB@Position Seed - sRNA 30 -- 36@LB@ |
| 126 |
0.00537 |
0.142 |
b3789 |
rffH |
-9.20 |
0.230539 |
124 -- 140 |
30 -- 46 |
glucose-1-phosphate thymidylyltransferase |
|
_____________123_______________141\n_____________|_________________|\n5'-GGC...AAGCU_____AAG_A_______GACGG...UGA-3'\n______________GGUGG___C_GGUGCAG\n______________|||||___|_|||:|||\n______________CCACC___G_CCAUGUC\n3'-UUU...UUCCU_____AAG_A_______GAUCG...UCG-5'\n_____________|_________________|\n_____________47________________29\n |
134 -- 140 |
30 -- 36 |
-19.3061 kcal/mol |
5.8192 kcal/mol |
4.28755 kcal/mol |
123 141@LB@ | |@LB@5'-GGC...AAGCU AAG A GACGG...UGA-3'@LB@ GGUGG C GGUGCAG@LB@ ||||| | |||:|||@LB@ CCACC G CCAUGUC@LB@3'-UUU...UUCCU AAG A GAUCG...UCG-5'@LB@ | |@LB@ 47 29@LB@@LB@@LB@Energy -9.20 kcal/mol@LB@Hybridization Energy -19.3061 kcal/mol@LB@Unfolding Energy - mRNA 5.8192 kcal/mol@LB@Unfolding Energy - sRNA 4.28755 kcal/mol@LB@@LB@Position - mRNA 124 -- 140@LB@Position - sRNA 30 -- 46@LB@Position Seed - mRNA 134 -- 140@LB@Position Seed - sRNA 30 -- 36@LB@ |
| 51 |
0.001198 |
0.07744 |
b2174 |
lpxT |
-10.53 |
0.132559 |
260 -- 270 |
31 -- 41 |
lipid A 1-diphosphate synthase; undecaprenyl pyrophosphate:lipid A 1-phosphate phosphotransferase |
|
_____________259_________271\n_____________|___________|\n5'-GAA...UUUCU___________UCCCC...CGA-3'\n______________UUCCUGGUAUA\n______________|||||||||:|\n______________AAGGACCAUGU\n3'-UUU...CCACC___________CGAUC...UCG-5'\n_____________|___________|\n_____________42__________30\n |
264 -- 270 |
31 -- 37 |
-15.7095 kcal/mol |
1.92057 kcal/mol |
3.2552 kcal/mol |
259 271@LB@ | |@LB@5'-GAA...UUUCU UCCCC...CGA-3'@LB@ UUCCUGGUAUA@LB@ |||||||||:|@LB@ AAGGACCAUGU@LB@3'-UUU...CCACC CGAUC...UCG-5'@LB@ | |@LB@ 42 30@LB@@LB@@LB@Energy -10.53 kcal/mol@LB@Hybridization Energy -15.7095 kcal/mol@LB@Unfolding Energy - mRNA 1.92057 kcal/mol@LB@Unfolding Energy - sRNA 3.2552 kcal/mol@LB@@LB@Position - mRNA 260 -- 270@LB@Position - sRNA 31 -- 41@LB@Position Seed - mRNA 264 -- 270@LB@Position Seed - sRNA 31 -- 37@LB@ |
| 93 |
0.003115 |
0.1126 |
b2595 |
bamD |
-5.90 |
0.625252 |
19 -- 35 |
31 -- 48 |
BamABCDE complex OM biogenesis lipoprotein |
|
_____________18_________________36\n_____________|__________________|\n5'-CUG...UGACC___U_______C______CCGUU...AUG-3'\n______________GAG_UGGUUUU_GG_ACA\n______________|||_|||||::_||_|||\n______________CUC_ACCAAGG_CC_UGU\n3'-UUU...GAUUC___C_______A__A___CGAUC...UCG-5'\n_____________|__________________|\n_____________49_________________30\n |
23 -- 29 |
38 -- 44 |
-14.3523 kcal/mol |
5.2001 kcal/mol |
3.25694 kcal/mol |
18 36@LB@ | |@LB@5'-CUG...UGACC U C CCGUU...AUG-3'@LB@ GAG UGGUUUU GG ACA@LB@ ||| |||||:: || |||@LB@ CUC ACCAAGG CC UGU@LB@3'-UUU...GAUUC C A A CGAUC...UCG-5'@LB@ | |@LB@ 49 30@LB@@LB@@LB@Energy -5.90 kcal/mol@LB@Hybridization Energy -14.3523 kcal/mol@LB@Unfolding Energy - mRNA 5.2001 kcal/mol@LB@Unfolding Energy - sRNA 3.25694 kcal/mol@LB@@LB@Position - mRNA 19 -- 35@LB@Position - sRNA 31 -- 48@LB@Position Seed - mRNA 23 -- 29@LB@Position Seed - sRNA 38 -- 44@LB@ |
| 35 |
0.0006725 |
0.06313 |
b3455 |
livG |
-12.92 |
0.040223 |
97 -- 112 |
32 -- 46 |
branched-chain amino acid ABC transporter ATPase |
|
_____________96_______________113\n_____________|________________|\n5'-AUG...UGCUC________GA______UGAUG...UCG-3'\n______________GGUGGUUU__UGGUGC\n______________|||||||:__||||:|\n______________CCACCAAG__ACCAUG\n3'-UUU...UUCCU________G_______UCGAU...UCG-5'\n_____________|________________|\n_____________47_______________31\n |
98 -- 104 |
39 -- 45 |
-21.8288 kcal/mol |
5.65514 kcal/mol |
3.25632 kcal/mol |
96 113@LB@ | |@LB@5'-AUG...UGCUC GA UGAUG...UCG-3'@LB@ GGUGGUUU UGGUGC@LB@ |||||||: ||||:|@LB@ CCACCAAG ACCAUG@LB@3'-UUU...UUCCU G UCGAU...UCG-5'@LB@ | |@LB@ 47 31@LB@@LB@@LB@Energy -12.92 kcal/mol@LB@Hybridization Energy -21.8288 kcal/mol@LB@Unfolding Energy - mRNA 5.65514 kcal/mol@LB@Unfolding Energy - sRNA 3.25632 kcal/mol@LB@@LB@Position - mRNA 97 -- 112@LB@Position - sRNA 32 -- 46@LB@Position Seed - mRNA 98 -- 104@LB@Position Seed - sRNA 39 -- 45@LB@ |
| 159 |
0.008045 |
0.1694 |
b1780 |
yeaD |
-12.23 |
0.058242 |
44 -- 57 |
32 -- 44 |
D-hexose-6-phosphate epimerase-like protein |
|
_____________43_____________58\n_____________|______________|\n5'-GAU...GAAAC____A_________GACAA...AUC-3'\n______________UGGU_UCCUGGUAC\n______________||||_|||||||||\n______________ACCA_AGGACCAUG\n3'-UUU...CCUCC______________UCGAU...UCG-5'\n_____________|______________|\n_____________45_____________31\n |
51 -- 57 |
32 -- 38 |
-20.6656 kcal/mol |
5.17692 kcal/mol |
3.25604 kcal/mol |
43 58@LB@ | |@LB@5'-GAU...GAAAC A GACAA...AUC-3'@LB@ UGGU UCCUGGUAC@LB@ |||| |||||||||@LB@ ACCA AGGACCAUG@LB@3'-UUU...CCUCC UCGAU...UCG-5'@LB@ | |@LB@ 45 31@LB@@LB@@LB@Energy -12.23 kcal/mol@LB@Hybridization Energy -20.6656 kcal/mol@LB@Unfolding Energy - mRNA 5.17692 kcal/mol@LB@Unfolding Energy - sRNA 3.25604 kcal/mol@LB@@LB@Position - mRNA 44 -- 57@LB@Position - sRNA 32 -- 44@LB@Position Seed - mRNA 51 -- 57@LB@Position Seed - sRNA 32 -- 38@LB@ |
| 4 |
1.432e-06 |
0.001203 |
b4547 |
ypfN |
-14.60 |
0.014593 |
223 -- 236 |
33 -- 46 |
putative membrane protein UPF0370 family |
|
_____________222____________237\n_____________|______________|\n5'-UGA...AUAUU_____A________AUUGU...AGA-3'\n______________GGUGG_UUCUGGUG\n______________|||||_|:|||||:\n______________CCACC_AGGACCAU\n3'-UUU...UUCCU_____A________GUCGA...UCG-5'\n_____________|______________|\n_____________47_____________32\n |
230 -- 236 |
33 -- 39 |
-20.5459 kcal/mol |
2.69728 kcal/mol |
3.25117 kcal/mol |
222 237@LB@ | |@LB@5'-UGA...AUAUU A AUUGU...AGA-3'@LB@ GGUGG UUCUGGUG@LB@ ||||| |:|||||:@LB@ CCACC AGGACCAU@LB@3'-UUU...UUCCU A GUCGA...UCG-5'@LB@ | |@LB@ 47 32@LB@@LB@@LB@Energy -14.60 kcal/mol@LB@Hybridization Energy -20.5459 kcal/mol@LB@Unfolding Energy - mRNA 2.69728 kcal/mol@LB@Unfolding Energy - sRNA 3.25117 kcal/mol@LB@@LB@Position - mRNA 223 -- 236@LB@Position - sRNA 33 -- 46@LB@Position Seed - mRNA 230 -- 236@LB@Position Seed - sRNA 33 -- 39@LB@ |
