| 21 |
0.0001799 |
0.02879 |
b0107 |
hofB |
-20.93 |
0.000028 |
267 -- 289 |
25 -- 48 |
T2SE secretion family protein; P-loop ATPase superfamily protein |
|
_____________266______________________290\n_____________|________________________|\n5'-CCA...GCGAA__________A__U__________CGAUG...CUU-3'\n______________GAGGUGGUUC_UG_UGCGG_UAGU\n______________||||||||||_||_|:|:|_|||:\n______________CUCCACCAAG_AC_AUGUC_AUCG\n3'-UUU...GAUUC__________G__C_____G____UAAAA...UCG-5'\n_____________|________________________|\n_____________49_______________________24\n |
270 -- 276 |
39 -- 45 |
-28.7026 kcal/mol |
3.21789 kcal/mol |
4.55759 kcal/mol |
266 290@LB@ | |@LB@5'-CCA...GCGAA A U CGAUG...CUU-3'@LB@ GAGGUGGUUC UG UGCGG UAGU@LB@ |||||||||| || |:|:| |||:@LB@ CUCCACCAAG AC AUGUC AUCG@LB@3'-UUU...GAUUC G C G UAAAA...UCG-5'@LB@ | |@LB@ 49 24@LB@@LB@@LB@Energy -20.93 kcal/mol@LB@Hybridization Energy -28.7026 kcal/mol@LB@Unfolding Energy - mRNA 3.21789 kcal/mol@LB@Unfolding Energy - sRNA 4.55759 kcal/mol@LB@@LB@Position - mRNA 267 -- 289@LB@Position - sRNA 25 -- 48@LB@Position Seed - mRNA 270 -- 276@LB@Position Seed - sRNA 39 -- 45@LB@ |
| 7 |
1.492e-05 |
0.007162 |
b0903 |
pflB |
-20.16 |
0.000088 |
81 -- 115 |
14 -- 49 |
formate C-acetyltransferase 1 anaerobic; pyruvate formate-lyase 1 |
|
_____________80____________________________________116\n_____________|_____________________________________|\n5'-CAC...UUAUC__U________GU____UG_____A___AC_______CAUUU...ACU-3'\n______________GG_GGUGGUUU__UGGU__GGUUG_CAU____UGGGU\n______________||_|||||||:__||||__:|:|:_|||____|||||\n______________CC_CCACCAAG__ACCA__UCGAU_GUA____ACCCA\n3'-UUU...CGAUU__U________G_____UG_____C___AAAU_____AUACA...UCG-5'\n_____________|_____________________________________|\n_____________50____________________________________13\n |
85 -- 91 |
39 -- 45 |
-33.3931 kcal/mol |
8.66349 kcal/mol |
4.57395 kcal/mol |
80 116@LB@ | |@LB@5'-CAC...UUAUC U GU UG A AC CAUUU...ACU-3'@LB@ GG GGUGGUUU UGGU GGUUG CAU UGGGU@LB@ || |||||||: |||| :|:|: ||| |||||@LB@ CC CCACCAAG ACCA UCGAU GUA ACCCA@LB@3'-UUU...CGAUU U G UG C AAAU AUACA...UCG-5'@LB@ | |@LB@ 50 13@LB@@LB@@LB@Energy -20.16 kcal/mol@LB@Hybridization Energy -33.3931 kcal/mol@LB@Unfolding Energy - mRNA 8.66349 kcal/mol@LB@Unfolding Energy - sRNA 4.57395 kcal/mol@LB@@LB@Position - mRNA 81 -- 115@LB@Position - sRNA 14 -- 49@LB@Position Seed - mRNA 85 -- 91@LB@Position Seed - sRNA 39 -- 45@LB@ |
| 27 |
0.0003737 |
0.04652 |
b2828 |
lgt |
-19.83 |
0.000134 |
254 -- 300 |
13 -- 50 |
phosphatidylglycerol-prolipoprotein diacylglyceryl transferase |
|
_____________253____________________________________________300\n_____________|______________________________________________|\n5'-CCU...UCAAU____CCC____CGC___A__________CUGAU____CUG_______-3'\n______________AGGA___GUGG___UUC_CUGGUACGGC_____GUAU___GUGGGUU\n______________||||___||||___|||_|||||||:||_____|:||___:||||||\n______________UCCU___CACC___AAG_GACCAUGUCG_____CGUA___UACCCAA\n3'-UUU...CCGAU____C_______________________AU_______AAA_______UACAA...UCG-5'\n_____________|_______________________________________________|\n_____________51______________________________________________12\n |
294 -- 300 |
13 -- 19 |
-39.0639 kcal/mol |
14.6059 kcal/mol |
4.62837 kcal/mol |
253 300@LB@ | |@LB@5'-CCU...UCAAU CCC CGC A CUGAU CUG -3'@LB@ AGGA GUGG UUC CUGGUACGGC GUAU GUGGGUU@LB@ |||| |||| ||| |||||||:|| |:|| :||||||@LB@ UCCU CACC AAG GACCAUGUCG CGUA UACCCAA@LB@3'-UUU...CCGAU C AU AAA UACAA...UCG-5'@LB@ | |@LB@ 51 12@LB@@LB@@LB@Energy -19.83 kcal/mol@LB@Hybridization Energy -39.0639 kcal/mol@LB@Unfolding Energy - mRNA 14.6059 kcal/mol@LB@Unfolding Energy - sRNA 4.62837 kcal/mol@LB@@LB@Position - mRNA 254 -- 300@LB@Position - sRNA 13 -- 50@LB@Position Seed - mRNA 294 -- 300@LB@Position Seed - sRNA 13 -- 19@LB@ |
| 19 |
0.000151 |
0.02671 |
b2142 |
yohK |
-18.84 |
0.000427 |
90 -- 130 |
4 -- 49 |
LrgB family inner membrane protein |
|
_____________89______________________________________________131\n_____________|_______________________________________________|\n5'-GUA...GGCCC__UA____U_____________C____CGCU______G_________UGGUG...CGU-3'\n______________GG__GUGG_UUCCU_GUGCAGU_AGUA_______GGU___GUUUUUC\n______________||__||||_|||||_||:|||:_||:|_______|||___|||||||\n______________CC__CACC_AAGGA_CAUGUCG_UCGU_______CCA___CAAAAAG\n3'-UUU...CGAUU__UC__________C_______A____AAAAUAC___AUA_______UCG-5'\n_____________|_______________________________________________|\n_____________50______________________________________________3\n |
124 -- 130 |
4 -- 10 |
-35.205 kcal/mol |
11.7562 kcal/mol |
4.60954 kcal/mol |
89 131@LB@ | |@LB@5'-GUA...GGCCC UA U C CGCU G UGGUG...CGU-3'@LB@ GG GUGG UUCCU GUGCAGU AGUA GGU GUUUUUC@LB@ || |||| ||||| ||:|||: ||:| ||| |||||||@LB@ CC CACC AAGGA CAUGUCG UCGU CCA CAAAAAG@LB@3'-UUU...CGAUU UC C A AAAAUAC AUA UCG-5'@LB@ | |@LB@ 50 3@LB@@LB@@LB@Energy -18.84 kcal/mol@LB@Hybridization Energy -35.205 kcal/mol@LB@Unfolding Energy - mRNA 11.7562 kcal/mol@LB@Unfolding Energy - sRNA 4.60954 kcal/mol@LB@@LB@Position - mRNA 90 -- 130@LB@Position - sRNA 4 -- 49@LB@Position Seed - mRNA 124 -- 130@LB@Position Seed - sRNA 4 -- 10@LB@ |
| 3 |
2.088e-07 |
0.000234 |
b2077 |
iceT |
-18.53 |
0.000593 |
226 -- 254 |
1 -- 30 |
putative citrate/iron-citrate/zinc-citrate efflux transporter |
|
_____________225____________________________255\n_____________|______________________________|\n5'-CGG...CACCC_______A_______A_____GC_______UUCUU...UUC-3'\n______________GUUGGCA__UUGUGG_UUGUG__UUUCGGC\n______________|:|:|||__||:|||_||:||__||||:||\n______________CGAUCGU__AAUACC_AAUAC__AAAGUCG\n3'-UUU...CAUGU_______AA______C_____AA_______-5'\n_____________|_____________________________|\n_____________31____________________________1\n |
248 -- 254 |
1 -- 7 |
-30.4381 kcal/mol |
10.4245 kcal/mol |
1.48556 kcal/mol |
225 255@LB@ | |@LB@5'-CGG...CACCC A A GC UUCUU...UUC-3'@LB@ GUUGGCA UUGUGG UUGUG UUUCGGC@LB@ |:|:||| ||:||| ||:|| ||||:||@LB@ CGAUCGU AAUACC AAUAC AAAGUCG@LB@3'-UUU...CAUGU AA C AA -5'@LB@ | |@LB@ 31 1@LB@@LB@@LB@Energy -18.53 kcal/mol@LB@Hybridization Energy -30.4381 kcal/mol@LB@Unfolding Energy - mRNA 10.4245 kcal/mol@LB@Unfolding Energy - sRNA 1.48556 kcal/mol@LB@@LB@Position - mRNA 226 -- 254@LB@Position - sRNA 1 -- 30@LB@Position Seed - mRNA 248 -- 254@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 13 |
6.02e-05 |
0.01556 |
b1686 |
menI |
-18.50 |
0.000608 |
260 -- 300 |
10 -- 49 |
1 4-dihydroxy-2-naphthoyl-CoA hydrolase |
|
_____________259_______________________________________300\n_____________|_________________________________________|\n5'-GGC...AACAU__U____________A___UC___UUGAACA___U___G___-3'\n______________GG_GG_GGUUCCUGG_UAU__GCU_______UAU_GGU_AUG\n______________||_||_|||||||||_||:__|||_______|||_|||_|||\n______________CC_CC_CCAAGGACC_AUG__CGA_______AUA_CCA_UAC\n3'-UUU...CGAUU__U__A_____________U____UCGUAAA___C___A___AAAAA...UCG-5'\n_____________|__________________________________________|\n_____________50_________________________________________9\n |
267 -- 273 |
35 -- 41 |
-31.9875 kcal/mol |
8.87718 kcal/mol |
4.60649 kcal/mol |
259 300@LB@ | |@LB@5'-GGC...AACAU U A UC UUGAACA U G -3'@LB@ GG GG GGUUCCUGG UAU GCU UAU GGU AUG@LB@ || || ||||||||| ||: ||| ||| ||| |||@LB@ CC CC CCAAGGACC AUG CGA AUA CCA UAC@LB@3'-UUU...CGAUU U A U UCGUAAA C A AAAAA...UCG-5'@LB@ | |@LB@ 50 9@LB@@LB@@LB@Energy -18.50 kcal/mol@LB@Hybridization Energy -31.9875 kcal/mol@LB@Unfolding Energy - mRNA 8.87718 kcal/mol@LB@Unfolding Energy - sRNA 4.60649 kcal/mol@LB@@LB@Position - mRNA 260 -- 300@LB@Position - sRNA 10 -- 49@LB@Position Seed - mRNA 267 -- 273@LB@Position Seed - sRNA 35 -- 41@LB@ |
| 2 |
1.307e-08 |
2.196e-05 |
b1825 |
yebO |
-18.49 |
0.000616 |
254 -- 287 |
16 -- 49 |
putative inner membrane protein |
|
_____________253__________________________________288\n_____________|____________________________________|\n5'-GUC...GUAUC__U__________CU___CG_________C______UUUUU...AUC-3'\n______________GG_GGUGGUUCUU__UAU__GGCU__CAU_UUGUGG\n______________||_||||||||:|__||:__:|||__|||_||:|||\n______________CC_CCACCAAGGA__AUG__UCGA__GUA_AAUACC\n3'-UUU...CGAUU__U__________CC_________UC___A______CAAUA...UCG-5'\n_____________|____________________________________|\n_____________50___________________________________15\n |
260 -- 266 |
37 -- 43 |
-30.8156 kcal/mol |
7.75183 kcal/mol |
4.57266 kcal/mol |
253 288@LB@ | |@LB@5'-GUC...GUAUC U CU CG C UUUUU...AUC-3'@LB@ GG GGUGGUUCUU UAU GGCU CAU UUGUGG@LB@ || ||||||||:| ||: :||| ||| ||:|||@LB@ CC CCACCAAGGA AUG UCGA GUA AAUACC@LB@3'-UUU...CGAUU U CC UC A CAAUA...UCG-5'@LB@ | |@LB@ 50 15@LB@@LB@@LB@Energy -18.49 kcal/mol@LB@Hybridization Energy -30.8156 kcal/mol@LB@Unfolding Energy - mRNA 7.75183 kcal/mol@LB@Unfolding Energy - sRNA 4.57266 kcal/mol@LB@@LB@Position - mRNA 254 -- 287@LB@Position - sRNA 16 -- 49@LB@Position Seed - mRNA 260 -- 266@LB@Position Seed - sRNA 37 -- 43@LB@ |
| 157 |
0.007972 |
0.1694 |
b4350 |
hsdR |
-17.86 |
0.001148 |
15 -- 50 |
1 -- 35 |
endonuclease R Type I restriction enzyme |
|
_____________14____________________________________51\n_____________|_____________________________________|\n5'-UAG...UCAUA_____UC__U___GAAUCA____AG____________UACUA...ACA-3'\n______________GUACA__CU_GCA_______GGU__AUGUUUUUCGGC\n______________|||||__||_|||_______|||__|||||||||:||\n______________CAUGU__GA_CGU_______CCA__UACAAAAAGUCG\n3'-UUU...AGGAC_____C___U___AAAAUAC___A_____________-5'\n_____________|____________________________________|\n_____________36___________________________________1\n |
44 -- 50 |
1 -- 7 |
-27.1826 kcal/mol |
7.83025 kcal/mol |
1.49508 kcal/mol |
14 51@LB@ | |@LB@5'-UAG...UCAUA UC U GAAUCA AG UACUA...ACA-3'@LB@ GUACA CU GCA GGU AUGUUUUUCGGC@LB@ ||||| || ||| ||| |||||||||:||@LB@ CAUGU GA CGU CCA UACAAAAAGUCG@LB@3'-UUU...AGGAC C U AAAAUAC A -5'@LB@ | |@LB@ 36 1@LB@@LB@@LB@Energy -17.86 kcal/mol@LB@Hybridization Energy -27.1826 kcal/mol@LB@Unfolding Energy - mRNA 7.83025 kcal/mol@LB@Unfolding Energy - sRNA 1.49508 kcal/mol@LB@@LB@Position - mRNA 15 -- 50@LB@Position - sRNA 1 -- 35@LB@Position Seed - mRNA 44 -- 50@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 11 |
3.883e-05 |
0.01168 |
b4074 |
nrfE |
-17.71 |
0.001322 |
131 -- 144 |
35 -- 48 |
heme lyase (NrfEFG) for insertion of heme into c552 subunit NrfE |
|
_____________130____________145\n_____________|______________|\n5'-ACC...GAAAA______________ACGUA...UGC-3'\n______________GAGGUGGUUUCUGG\n______________|||||||||:||||\n______________CUCCACCAAGGACC\n3'-UUU...GAUUC______________AUGUC...UCG-5'\n_____________|______________|\n_____________49_____________34\n |
138 -- 144 |
35 -- 41 |
-26.5218 kcal/mol |
5.67902 kcal/mol |
3.13693 kcal/mol |
130 145@LB@ | |@LB@5'-ACC...GAAAA ACGUA...UGC-3'@LB@ GAGGUGGUUUCUGG@LB@ |||||||||:||||@LB@ CUCCACCAAGGACC@LB@3'-UUU...GAUUC AUGUC...UCG-5'@LB@ | |@LB@ 49 34@LB@@LB@@LB@Energy -17.71 kcal/mol@LB@Hybridization Energy -26.5218 kcal/mol@LB@Unfolding Energy - mRNA 5.67902 kcal/mol@LB@Unfolding Energy - sRNA 3.13693 kcal/mol@LB@@LB@Position - mRNA 131 -- 144@LB@Position - sRNA 35 -- 48@LB@Position Seed - mRNA 138 -- 144@LB@Position Seed - sRNA 35 -- 41@LB@ |
| 20 |
0.0001678 |
0.0282 |
b2056 |
wcaD |
-17.66 |
0.001373 |
77 -- 104 |
24 -- 48 |
putative colanic acid polymerase |
|
_____________76___________________________105\n_____________|____________________________|\n5'-GCC...AAGAA______CUGCAA____________A___AACCG...UCA-3'\n______________GAGGUG______CUGGUGCAGUUA_GCA\n______________||||||______|||||:|||:||_|||\n______________CUCCAC______GACCAUGUCGAU_CGU\n3'-UUU...GAUUC______CAAG__________________AAAAU...UCG-5'\n_____________|____________________________|\n_____________49___________________________23\n |
94 -- 100 |
27 -- 33 |
-32.1729 kcal/mol |
9.95006 kcal/mol |
4.55899 kcal/mol |
76 105@LB@ | |@LB@5'-GCC...AAGAA CUGCAA A AACCG...UCA-3'@LB@ GAGGUG CUGGUGCAGUUA GCA@LB@ |||||| |||||:|||:|| |||@LB@ CUCCAC GACCAUGUCGAU CGU@LB@3'-UUU...GAUUC CAAG AAAAU...UCG-5'@LB@ | |@LB@ 49 23@LB@@LB@@LB@Energy -17.66 kcal/mol@LB@Hybridization Energy -32.1729 kcal/mol@LB@Unfolding Energy - mRNA 9.95006 kcal/mol@LB@Unfolding Energy - sRNA 4.55899 kcal/mol@LB@@LB@Position - mRNA 77 -- 104@LB@Position - sRNA 24 -- 48@LB@Position Seed - mRNA 94 -- 100@LB@Position Seed - sRNA 27 -- 33@LB@ |
