177 |
0.009845 |
0.1869 |
b3241 |
aaeA |
-6.34 |
0.565531 |
229 -- 235 |
29 -- 35 |
p-hydroxybenzoic acid efflux system component |
|
_____________228_____236\n_____________|_______|\n5'-UCC...CUCCC_______CAUCA...CCG-3'\n______________GUACGGC\n______________||||:||\n______________CAUGUCG\n3'-UUU...AGGAC_______AUCGU...UCG-5'\n_____________|_______|\n_____________36______28\n |
229 -- 235 |
29 -- 35 |
-10.2139 kcal/mol |
2.71034 kcal/mol |
1.16584 kcal/mol |
228 236@LB@ | |@LB@5'-UCC...CUCCC CAUCA...CCG-3'@LB@ GUACGGC@LB@ ||||:||@LB@ CAUGUCG@LB@3'-UUU...AGGAC AUCGU...UCG-5'@LB@ | |@LB@ 36 28@LB@@LB@@LB@Energy -6.34 kcal/mol@LB@Hybridization Energy -10.2139 kcal/mol@LB@Unfolding Energy - mRNA 2.71034 kcal/mol@LB@Unfolding Energy - sRNA 1.16584 kcal/mol@LB@@LB@Position - mRNA 229 -- 235@LB@Position - sRNA 29 -- 35@LB@Position Seed - mRNA 229 -- 235@LB@Position Seed - sRNA 29 -- 35@LB@ |
80 |
0.002475 |
0.104 |
b2468 |
aegA |
-11.19 |
0.098238 |
223 -- 245 |
11 -- 33 |
putative oxidoreductase FeS binding subunit/NAD/FAD-binding subunit |
|
_____________222_____________________246\n_____________|_______________________|\n5'-UCU...GGCCA_____C____AUGUC________CAUGC...UGA-3'\n______________ACAGU_AGCA_____UGGGUUGU\n______________||||:_||||_____||||||:|\n______________UGUCG_UCGU_____ACCCAAUA\n3'-UUU...GACCA_____A____AAAAU________CAAAA...UCG-5'\n_____________|_______________________|\n_____________34______________________10\n |
239 -- 245 |
11 -- 17 |
-21.0997 kcal/mol |
8.44489 kcal/mol |
1.46958 kcal/mol |
222 246@LB@ | |@LB@5'-UCU...GGCCA C AUGUC CAUGC...UGA-3'@LB@ ACAGU AGCA UGGGUUGU@LB@ ||||: |||| ||||||:|@LB@ UGUCG UCGU ACCCAAUA@LB@3'-UUU...GACCA A AAAAU CAAAA...UCG-5'@LB@ | |@LB@ 34 10@LB@@LB@@LB@Energy -11.19 kcal/mol@LB@Hybridization Energy -21.0997 kcal/mol@LB@Unfolding Energy - mRNA 8.44489 kcal/mol@LB@Unfolding Energy - sRNA 1.46958 kcal/mol@LB@@LB@Position - mRNA 223 -- 245@LB@Position - sRNA 11 -- 33@LB@Position Seed - mRNA 239 -- 245@LB@Position Seed - sRNA 11 -- 17@LB@ |
168 |
0.00897 |
0.1795 |
b3139 |
agaC |
-13.68 |
0.025868 |
233 -- 273 |
1 -- 39 |
N-acetylgalactosamine-specific enzyme IIC component of PTS |
|
_____________232________________________________________274\n_____________|__________________________________________|\n5'-AAC...UUAUC_____CG_________U___GUUC____GAU__A________UGGAA...CGA-3'\n______________CCUGG__GC_GUUAGU_UUU____UGGG___UG_UUUUUGGC\n______________|||||__:|_|:|||:_|||____||||___||_||||::||\n______________GGACC__UG_CGAUCG_AAA____ACCC___AC_AAAAGUCG\n3'-UUU...ACCAA_____A___U______U___AU______AAU__A________-5'\n_____________|_________________________________________|\n_____________40________________________________________1\n |
267 -- 273 |
1 -- 7 |
-31.3276 kcal/mol |
13.0397 kcal/mol |
4.60651 kcal/mol |
232 274@LB@ | |@LB@5'-AAC...UUAUC CG U GUUC GAU A UGGAA...CGA-3'@LB@ CCUGG GC GUUAGU UUU UGGG UG UUUUUGGC@LB@ ||||| :| |:|||: ||| |||| || ||||::||@LB@ GGACC UG CGAUCG AAA ACCC AC AAAAGUCG@LB@3'-UUU...ACCAA A U U AU AAU A -5'@LB@ | |@LB@ 40 1@LB@@LB@@LB@Energy -13.68 kcal/mol@LB@Hybridization Energy -31.3276 kcal/mol@LB@Unfolding Energy - mRNA 13.0397 kcal/mol@LB@Unfolding Energy - sRNA 4.60651 kcal/mol@LB@@LB@Position - mRNA 233 -- 273@LB@Position - sRNA 1 -- 39@LB@Position Seed - mRNA 267 -- 273@LB@Position Seed - sRNA 1 -- 7@LB@ |
144 |
0.006813 |
0.158 |
b0111 |
ampE |
-6.38 |
0.559697 |
294 -- 300 |
1 -- 7 |
ampicillin resistance inner membrane protein; putative signaling protein in beta-lactamase regulation |
|
_____________293____300\n_____________|______|\n5'-CUU...CGUUC_______-3'\n______________UUUCGGC\n______________||||:||\n______________AAAGUCG\n3'-UUU...UACAA_______-5'\n_____________|______|\n_____________8______1\n |
294 -- 300 |
1 -- 7 |
-7.27697 kcal/mol |
0.0992979 kcal/mol |
0.796773 kcal/mol |
293 300@LB@ | |@LB@5'-CUU...CGUUC -3'@LB@ UUUCGGC@LB@ ||||:||@LB@ AAAGUCG@LB@3'-UUU...UACAA -5'@LB@ | |@LB@ 8 1@LB@@LB@@LB@Energy -6.38 kcal/mol@LB@Hybridization Energy -7.27697 kcal/mol@LB@Unfolding Energy - mRNA 0.0992979 kcal/mol@LB@Unfolding Energy - sRNA 0.796773 kcal/mol@LB@@LB@Position - mRNA 294 -- 300@LB@Position - sRNA 1 -- 7@LB@Position Seed - mRNA 294 -- 300@LB@Position Seed - sRNA 1 -- 7@LB@ |
106 |
0.003955 |
0.1254 |
b1767 |
ansA |
-7.74 |
0.383564 |
250 -- 272 |
11 -- 34 |
cytoplasmic L-asparaginase 1 |
|
_____________249______________________273\n_____________|________________________|\n5'-UGC...CGGGA______GUUCCGAGCA________AUACC...GCC-3'\n______________UGCAGC___________GGGUUAU\n______________|:||||___________|||||||\n______________AUGUCG___________CCCAAUA\n3'-UUU...GGACC______AUCGUAAAAUA_______CAAAA...UCG-5'\n_____________|________________________|\n_____________35_______________________10\n |
266 -- 272 |
11 -- 17 |
-16.5796 kcal/mol |
7.36686 kcal/mol |
1.47152 kcal/mol |
249 273@LB@ | |@LB@5'-UGC...CGGGA GUUCCGAGCA AUACC...GCC-3'@LB@ UGCAGC GGGUUAU@LB@ |:|||| |||||||@LB@ AUGUCG CCCAAUA@LB@3'-UUU...GGACC AUCGUAAAAUA CAAAA...UCG-5'@LB@ | |@LB@ 35 10@LB@@LB@@LB@Energy -7.74 kcal/mol@LB@Hybridization Energy -16.5796 kcal/mol@LB@Unfolding Energy - mRNA 7.36686 kcal/mol@LB@Unfolding Energy - sRNA 1.47152 kcal/mol@LB@@LB@Position - mRNA 250 -- 272@LB@Position - sRNA 11 -- 34@LB@Position Seed - mRNA 266 -- 272@LB@Position Seed - sRNA 11 -- 17@LB@ |
68 |
0.001845 |
0.09081 |
b2957 |
ansB |
-14.03 |
0.020893 |
243 -- 268 |
22 -- 43 |
periplasmic L-asparaginase 2 |
|
_____________242________________________269\n_____________|__________________________|\n5'-AGC...UUAUG______AG_________AU_______ACCCA...GGA-3'\n______________GGUUUU__UGGUGCAGC__UGGCAUU\n______________||||::__||||:||||__|:|||||\n______________CCAAGG__ACCAUGUCG__AUCGUAA\n3'-UUU...CUCCA__________________________AAUAC...UCG-5'\n_____________|__________________________|\n_____________44_________________________21\n |
262 -- 268 |
22 -- 28 |
-26.4763 kcal/mol |
7.8858 kcal/mol |
4.55803 kcal/mol |
242 269@LB@ | |@LB@5'-AGC...UUAUG AG AU ACCCA...GGA-3'@LB@ GGUUUU UGGUGCAGC UGGCAUU@LB@ ||||:: ||||:|||| |:|||||@LB@ CCAAGG ACCAUGUCG AUCGUAA@LB@3'-UUU...CUCCA AAUAC...UCG-5'@LB@ | |@LB@ 44 21@LB@@LB@@LB@Energy -14.03 kcal/mol@LB@Hybridization Energy -26.4763 kcal/mol@LB@Unfolding Energy - mRNA 7.8858 kcal/mol@LB@Unfolding Energy - sRNA 4.55803 kcal/mol@LB@@LB@Position - mRNA 243 -- 268@LB@Position - sRNA 22 -- 43@LB@Position Seed - mRNA 262 -- 268@LB@Position Seed - sRNA 22 -- 28@LB@ |
166 |
0.008687 |
0.1759 |
b3210 |
arcB |
-6.83 |
0.499810 |
260 -- 284 |
24 -- 46 |
aerobic respiration control sensor histidine protein kinase cognate to two-component response regulators ArcA and RssB |
|
_____________259_______________________285\n_____________|_________________________|\n5'-UGC...GGUCU____C_C____CAAUGUU_______CUGGC...UUC-3'\n______________GGUG_G_UUCU_______GCUGGCG\n______________||||_|_|||:_______|||:||:\n______________CCAC_C_AAGG_______CGAUCGU\n3'-UUU...UUCCU___________ACCAUGU_______AAAAU...UCG-5'\n_____________|_________________________|\n_____________47________________________23\n |
278 -- 284 |
24 -- 30 |
-17.917 kcal/mol |
6.53164 kcal/mol |
4.55813 kcal/mol |
259 285@LB@ | |@LB@5'-UGC...GGUCU C C CAAUGUU CUGGC...UUC-3'@LB@ GGUG G UUCU GCUGGCG@LB@ |||| | |||: |||:||:@LB@ CCAC C AAGG CGAUCGU@LB@3'-UUU...UUCCU ACCAUGU AAAAU...UCG-5'@LB@ | |@LB@ 47 23@LB@@LB@@LB@Energy -6.83 kcal/mol@LB@Hybridization Energy -17.917 kcal/mol@LB@Unfolding Energy - mRNA 6.53164 kcal/mol@LB@Unfolding Energy - sRNA 4.55813 kcal/mol@LB@@LB@Position - mRNA 260 -- 284@LB@Position - sRNA 24 -- 46@LB@Position Seed - mRNA 278 -- 284@LB@Position Seed - sRNA 24 -- 30@LB@ |
102 |
0.003761 |
0.123 |
b0928 |
aspC |
-10.71 |
0.122473 |
105 -- 118 |
20 -- 33 |
aspartate aminotransferase PLP-dependent |
|
_____________104____________119\n_____________|______________|\n5'-CGU...CAAAA_____CU_______CAUCA...UUG-3'\n______________ACAGC__GCGUUUU\n______________|||||__||:||||\n______________UGUCG__CGUAAAA\n3'-UUU...GACCA_____AU_______UACCC...UCG-5'\n_____________|______________|\n_____________34_____________19\n |
112 -- 118 |
20 -- 26 |
-14.5276 kcal/mol |
2.38321 kcal/mol |
1.43447 kcal/mol |
104 119@LB@ | |@LB@5'-CGU...CAAAA CU CAUCA...UUG-3'@LB@ ACAGC GCGUUUU@LB@ ||||| ||:||||@LB@ UGUCG CGUAAAA@LB@3'-UUU...GACCA AU UACCC...UCG-5'@LB@ | |@LB@ 34 19@LB@@LB@@LB@Energy -10.71 kcal/mol@LB@Hybridization Energy -14.5276 kcal/mol@LB@Unfolding Energy - mRNA 2.38321 kcal/mol@LB@Unfolding Energy - sRNA 1.43447 kcal/mol@LB@@LB@Position - mRNA 105 -- 118@LB@Position - sRNA 20 -- 33@LB@Position Seed - mRNA 112 -- 118@LB@Position Seed - sRNA 20 -- 26@LB@ |
145 |
0.006858 |
0.158 |
b2079 |
baeR |
-14.59 |
0.014658 |
61 -- 107 |
1 -- 46 |
response regulator in two-component regulatory system with BaeS |
|
_____________60________________________________________________108\n_____________|_________________________________________________|\n5'-CAG...CCAGC__C______G__C__G________A____CC__AACAU____GA_____ACAUA...CGA-3'\n______________GG_GGUUCC_GG_UG_GGCUGGCG_UUUG__UG_____UGUU____AGC\n______________||_||||||_||_|:_:|||:||:_|||:__||_____||||____|||\n______________CC_CCAAGG_CC_AU_UCGAUCGU_AAAU__AC_____ACAA____UCG\n3'-UUU...UUCCU__A______A_____G________A________CCAAU____AAAG___-5'\n_____________|________________________________________________|\n_____________47_______________________________________________1\n |
78 -- 84 |
24 -- 30 |
-36.7072 kcal/mol |
17.5074 kcal/mol |
4.60935 kcal/mol |
60 108@LB@ | |@LB@5'-CAG...CCAGC C G C G A CC AACAU GA ACAUA...CGA-3'@LB@ GG GGUUCC GG UG GGCUGGCG UUUG UG UGUU AGC@LB@ || |||||| || |: :|||:||: |||: || |||| |||@LB@ CC CCAAGG CC AU UCGAUCGU AAAU AC ACAA UCG@LB@3'-UUU...UUCCU A A G A CCAAU AAAG -5'@LB@ | |@LB@ 47 1@LB@@LB@@LB@Energy -14.59 kcal/mol@LB@Hybridization Energy -36.7072 kcal/mol@LB@Unfolding Energy - mRNA 17.5074 kcal/mol@LB@Unfolding Energy - sRNA 4.60935 kcal/mol@LB@@LB@Position - mRNA 61 -- 107@LB@Position - sRNA 1 -- 46@LB@Position Seed - mRNA 78 -- 84@LB@Position Seed - sRNA 24 -- 30@LB@ |
93 |
0.003115 |
0.1126 |
b2595 |
bamD |
-5.90 |
0.625252 |
19 -- 35 |
31 -- 48 |
BamABCDE complex OM biogenesis lipoprotein |
|
_____________18_________________36\n_____________|__________________|\n5'-CUG...UGACC___U_______C______CCGUU...AUG-3'\n______________GAG_UGGUUUU_GG_ACA\n______________|||_|||||::_||_|||\n______________CUC_ACCAAGG_CC_UGU\n3'-UUU...GAUUC___C_______A__A___CGAUC...UCG-5'\n_____________|__________________|\n_____________49_________________30\n |
23 -- 29 |
38 -- 44 |
-14.3523 kcal/mol |
5.2001 kcal/mol |
3.25694 kcal/mol |
18 36@LB@ | |@LB@5'-CUG...UGACC U C CCGUU...AUG-3'@LB@ GAG UGGUUUU GG ACA@LB@ ||| |||||:: || |||@LB@ CUC ACCAAGG CC UGU@LB@3'-UUU...GAUUC C A A CGAUC...UCG-5'@LB@ | |@LB@ 49 30@LB@@LB@@LB@Energy -5.90 kcal/mol@LB@Hybridization Energy -14.3523 kcal/mol@LB@Unfolding Energy - mRNA 5.2001 kcal/mol@LB@Unfolding Energy - sRNA 3.25694 kcal/mol@LB@@LB@Position - mRNA 19 -- 35@LB@Position - sRNA 31 -- 48@LB@Position Seed - mRNA 23 -- 29@LB@Position Seed - sRNA 38 -- 44@LB@ |