| 40 |
0.0008246 |
0.06626 |
b4019 |
metH |
-11.44 |
0.086775 |
244 -- 271 |
15 -- 42 |
homocysteine-N5-methyltetrahydrofolate transmethylase B12-dependent |
|
_____________243____________________________272\n_____________|______________________________|\n5'-UGA...UGAAC__A_________U__AC____G________CACCA...ACG-3'\n______________GU_UUCUGGUGC_GG__GGCG___UAUGGG\n______________||_|:|||||:|_:|__:||:___||||||\n______________CA_AGGACCAUG_UC__UCGU___AUACCC\n3'-UUU...UCCAC_______________GA____AAA______AAUAC...UCG-5'\n_____________|______________________________|\n_____________43_____________________________14\n |
249 -- 255 |
32 -- 38 |
-26.1297 kcal/mol |
10.116 kcal/mol |
4.57031 kcal/mol |
243 272@LB@ | |@LB@5'-UGA...UGAAC A U AC G CACCA...ACG-3'@LB@ GU UUCUGGUGC GG GGCG UAUGGG@LB@ || |:|||||:| :| :||: ||||||@LB@ CA AGGACCAUG UC UCGU AUACCC@LB@3'-UUU...UCCAC GA AAA AAUAC...UCG-5'@LB@ | |@LB@ 43 14@LB@@LB@@LB@Energy -11.44 kcal/mol@LB@Hybridization Energy -26.1297 kcal/mol@LB@Unfolding Energy - mRNA 10.116 kcal/mol@LB@Unfolding Energy - sRNA 4.57031 kcal/mol@LB@@LB@Position - mRNA 244 -- 271@LB@Position - sRNA 15 -- 42@LB@Position Seed - mRNA 249 -- 255@LB@Position Seed - sRNA 32 -- 38@LB@ |
| 42 |
0.000828 |
0.06626 |
b2129 |
yehX |
-13.83 |
0.023625 |
55 -- 85 |
15 -- 47 |
putative ABC transporter ATPase |
|
_____________54________________________________86\n_____________|_________________________________|\n5'-GGU...GGCGC___C___________________UUUCCAG___CUGCU...UUG-3'\n______________AGG_GGUU_UUGGUGC_GCUGGU_______GGG\n______________|||_||||_:||||:|_|||:|:_______|||\n______________UCC_CCAA_GACCAUG_CGAUCG_______CCC\n3'-UUU...AUUCC___A____G_______U______UAAAAUA___AAUAC...UCG-5'\n_____________|_________________________________|\n_____________48________________________________14\n |
63 -- 69 |
32 -- 38 |
-32.2293 kcal/mol |
13.8239 kcal/mol |
4.57348 kcal/mol |
54 86@LB@ | |@LB@5'-GGU...GGCGC C UUUCCAG CUGCU...UUG-3'@LB@ AGG GGUU UUGGUGC GCUGGU GGG@LB@ ||| |||| :||||:| |||:|: |||@LB@ UCC CCAA GACCAUG CGAUCG CCC@LB@3'-UUU...AUUCC A G U UAAAAUA AAUAC...UCG-5'@LB@ | |@LB@ 48 14@LB@@LB@@LB@Energy -13.83 kcal/mol@LB@Hybridization Energy -32.2293 kcal/mol@LB@Unfolding Energy - mRNA 13.8239 kcal/mol@LB@Unfolding Energy - sRNA 4.57348 kcal/mol@LB@@LB@Position - mRNA 55 -- 85@LB@Position - sRNA 15 -- 47@LB@Position Seed - mRNA 63 -- 69@LB@Position Seed - sRNA 32 -- 38@LB@ |
| 49 |
0.001147 |
0.07744 |
b3039 |
ygiD |
-13.27 |
0.032900 |
280 -- 298 |
15 -- 33 |
4 5- DOPA-extradiol-dioxygenase |
|
_____________279_________________299\n_____________|___________________|\n5'-ACG...UACCC__________GAAGU____GA-3'\n______________GCAGCUGGCA_____UGGG\n______________:|||||:|||_____||||\n______________UGUCGAUCGU_____ACCC\n3'-UUU...GACCA__________AAAAU____AAUAC...UCG-5'\n_____________|___________________|\n_____________34__________________14\n |
283 -- 289 |
24 -- 30 |
-23.43 kcal/mol |
8.71058 kcal/mol |
1.44754 kcal/mol |
279 299@LB@ | |@LB@5'-ACG...UACCC GAAGU GA-3'@LB@ GCAGCUGGCA UGGG@LB@ :|||||:||| ||||@LB@ UGUCGAUCGU ACCC@LB@3'-UUU...GACCA AAAAU AAUAC...UCG-5'@LB@ | |@LB@ 34 14@LB@@LB@@LB@Energy -13.27 kcal/mol@LB@Hybridization Energy -23.43 kcal/mol@LB@Unfolding Energy - mRNA 8.71058 kcal/mol@LB@Unfolding Energy - sRNA 1.44754 kcal/mol@LB@@LB@Position - mRNA 280 -- 298@LB@Position - sRNA 15 -- 33@LB@Position Seed - mRNA 283 -- 289@LB@Position Seed - sRNA 24 -- 30@LB@ |
| 87 |
0.00283 |
0.1082 |
b0657 |
lnt |
-15.14 |
0.010132 |
15 -- 41 |
15 -- 46 |
apolipoprotein N-acyltransferase |
|
_____________14_______________________________42\n_____________|________________________________|\n5'-AAG...CUAUC______________AU__A_____________CAUCU...UCU-3'\n______________GGUGG__UCUGGUG__GC_GGCAUU___UGGG\n______________|||||__:|||||:__||_:|||||___||||\n______________CCACC__GGACCAU__CG_UCGUAA___ACCC\n3'-UUU...UUCCU_____AA_______GU__A______AAU____AAUAC...UCG-5'\n_____________|________________________________|\n_____________47_______________________________14\n |
20 -- 26 |
33 -- 39 |
-31.43 kcal/mol |
11.7158 kcal/mol |
4.57271 kcal/mol |
14 42@LB@ | |@LB@5'-AAG...CUAUC AU A CAUCU...UCU-3'@LB@ GGUGG UCUGGUG GC GGCAUU UGGG@LB@ ||||| :|||||: || :||||| ||||@LB@ CCACC GGACCAU CG UCGUAA ACCC@LB@3'-UUU...UUCCU AA GU A AAU AAUAC...UCG-5'@LB@ | |@LB@ 47 14@LB@@LB@@LB@Energy -15.14 kcal/mol@LB@Hybridization Energy -31.43 kcal/mol@LB@Unfolding Energy - mRNA 11.7158 kcal/mol@LB@Unfolding Energy - sRNA 4.57271 kcal/mol@LB@@LB@Position - mRNA 15 -- 41@LB@Position - sRNA 15 -- 46@LB@Position Seed - mRNA 20 -- 26@LB@Position Seed - sRNA 33 -- 39@LB@ |
| 104 |
0.003825 |
0.1236 |
b0081 |
mraZ |
-12.90 |
0.040525 |
169 -- 210 |
15 -- 49 |
RsmH methytransferase inhibitor |
|
_____________168________________________________________211\n_____________|__________________________________________|\n5'-GAU...AUUGU____CAAA____GAAUAAGG____A_________GUUCC___GAGCA...AAA-3'\n______________GGGG____GUGG________GGUG_GGCUGGCAU_____GGG\n______________||:|____||||________|||:_:|||:||||_____|||\n______________CCUC____CACC________CCAU_UCGAUCGUA_____CCC\n3'-UUU...CGAUU____________AAGGA_______G_________AAAUA___AAUAC...UCG-5'\n_____________|__________________________________________|\n_____________50_________________________________________14\n |
196 -- 202 |
23 -- 29 |
-32.8076 kcal/mol |
15.3299 kcal/mol |
4.57366 kcal/mol |
168 211@LB@ | |@LB@5'-GAU...AUUGU CAAA GAAUAAGG A GUUCC GAGCA...AAA-3'@LB@ GGGG GUGG GGUG GGCUGGCAU GGG@LB@ ||:| |||| |||: :|||:|||| |||@LB@ CCUC CACC CCAU UCGAUCGUA CCC@LB@3'-UUU...CGAUU AAGGA G AAAUA AAUAC...UCG-5'@LB@ | |@LB@ 50 14@LB@@LB@@LB@Energy -12.90 kcal/mol@LB@Hybridization Energy -32.8076 kcal/mol@LB@Unfolding Energy - mRNA 15.3299 kcal/mol@LB@Unfolding Energy - sRNA 4.57366 kcal/mol@LB@@LB@Position - mRNA 169 -- 210@LB@Position - sRNA 15 -- 49@LB@Position Seed - mRNA 196 -- 202@LB@Position Seed - sRNA 23 -- 29@LB@ |
| 143 |
0.00681 |
0.158 |
b2418 |
pdxK |
-15.34 |
0.008827 |
271 -- 292 |
15 -- 47 |
pyridoxal-pyridoxamine kinase/hydroxymethylpyrimidine kinase |
|
_____________270_______________________________293\n_____________|_________________________________|\n5'-CAU...GUCGC_________________________________CAACAGCA-3'\n______________AGGUGGUUU_____ACGGC_AGC_____GUGGG\n______________||||||||:_____||:||_|||_____:||||\n______________UCCACCAAG_____UGUCG_UCG_____UACCC\n3'-UUU...AUUCC_________GACCA_____A___UAAAA_____AAUAC...UCG-5'\n_____________|_________________________________|\n_____________48________________________________14\n |
273 -- 279 |
39 -- 45 |
-26.4553 kcal/mol |
6.54205 kcal/mol |
4.57348 kcal/mol |
270 293@LB@ | |@LB@5'-CAU...GUCGC CAACAGCA-3'@LB@ AGGUGGUUU ACGGC AGC GUGGG@LB@ ||||||||: ||:|| ||| :||||@LB@ UCCACCAAG UGUCG UCG UACCC@LB@3'-UUU...AUUCC GACCA A UAAAA AAUAC...UCG-5'@LB@ | |@LB@ 48 14@LB@@LB@@LB@Energy -15.34 kcal/mol@LB@Hybridization Energy -26.4553 kcal/mol@LB@Unfolding Energy - mRNA 6.54205 kcal/mol@LB@Unfolding Energy - sRNA 4.57348 kcal/mol@LB@@LB@Position - mRNA 271 -- 292@LB@Position - sRNA 15 -- 47@LB@Position Seed - mRNA 273 -- 279@LB@Position Seed - sRNA 39 -- 45@LB@ |
| 149 |
0.00724 |
0.1633 |
b3494 |
uspB |
-9.24 |
0.227320 |
190 -- 228 |
15 -- 51 |
universal stress (ethanol tolerance) protein B |
|
_____________189_____________________________________229\n_____________|_______________________________________|\n5'-AAU...UCGCC_______A___AUGAUAA___C_GUC_____AUUU____CUUUA...UGC-3'\n______________GGGGAGG_GGU_______GCA_C___GCAUU____UGGG\n______________::|||||_|||_______:||_|___|||||____||||\n______________UUCCUCC_CCA_______UGU_G___CGUAA____ACCC\n3'-UUU...UCCGA_______A___AGGACCA___C_AU______AAU_____AAUAC...UCG-5'\n_____________|_______________________________________|\n_____________52______________________________________14\n |
190 -- 196 |
45 -- 51 |
-24.8188 kcal/mol |
10.9257 kcal/mol |
4.65724 kcal/mol |
189 229@LB@ | |@LB@5'-AAU...UCGCC A AUGAUAA C GUC AUUU CUUUA...UGC-3'@LB@ GGGGAGG GGU GCA C GCAUU UGGG@LB@ ::||||| ||| :|| | ||||| ||||@LB@ UUCCUCC CCA UGU G CGUAA ACCC@LB@3'-UUU...UCCGA A AGGACCA C AU AAU AAUAC...UCG-5'@LB@ | |@LB@ 52 14@LB@@LB@@LB@Energy -9.24 kcal/mol@LB@Hybridization Energy -24.8188 kcal/mol@LB@Unfolding Energy - mRNA 10.9257 kcal/mol@LB@Unfolding Energy - sRNA 4.65724 kcal/mol@LB@@LB@Position - mRNA 190 -- 228@LB@Position - sRNA 15 -- 51@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 45 -- 51@LB@ |
| 176 |
0.009679 |
0.1848 |
b4348 |
hsdS |
-12.85 |
0.041875 |
168 -- 192 |
15 -- 42 |
specificity determinant for hsdM and hsdR |
|
_____________167__________________________193\n_____________|____________________________|\n5'-CUG...CGUCA___G____A____A________G_____GUGAA...UAA-3'\n______________GUU_CUGG___AG__AGCGUUU_GUGGG\n______________|||_||||___||__|||:|||_:||||\n______________CAA_GACC___UC__UCGUAAA_UACCC\n3'-UUU...UCCAC___G____AUG__GA_______A_____AAUAC...UCG-5'\n_____________|____________________________|\n_____________43___________________________14\n |
180 -- 186 |
21 -- 27 |
-24.8178 kcal/mol |
7.40251 kcal/mol |
4.57031 kcal/mol |
167 193@LB@ | |@LB@5'-CUG...CGUCA G A A G GUGAA...UAA-3'@LB@ GUU CUGG AG AGCGUUU GUGGG@LB@ ||| |||| || |||:||| :||||@LB@ CAA GACC UC UCGUAAA UACCC@LB@3'-UUU...UCCAC G AUG GA A AAUAC...UCG-5'@LB@ | |@LB@ 43 14@LB@@LB@@LB@Energy -12.85 kcal/mol@LB@Hybridization Energy -24.8178 kcal/mol@LB@Unfolding Energy - mRNA 7.40251 kcal/mol@LB@Unfolding Energy - sRNA 4.57031 kcal/mol@LB@@LB@Position - mRNA 168 -- 192@LB@Position - sRNA 15 -- 42@LB@Position Seed - mRNA 180 -- 186@LB@Position Seed - sRNA 21 -- 27@LB@ |
| 181 |
0.0104 |
0.1919 |
b2106 |
rcnA |
-12.10 |
0.062308 |
133 -- 155 |
15 -- 50 |
membrane protein conferring nickel and cobalt resistance |
|
_____________132__________________________________156\n_____________|____________________________________|\n5'-UUC...CUACU_______A__A__A______________________GGGGA...ACU-3'\n______________GGGGGGU_GU_UC_GGUAC_____________UGGG\n______________:||:|||_||_:|_|||||_____________||||\n______________UCCUCCA_CA_GG_CCAUG_____________ACCC\n3'-UUU...CCGAU_______C__A__A_____UCGAUCGUAAAAU____AAUAC...UCG-5'\n_____________|____________________________________|\n_____________51___________________________________14\n |
133 -- 139 |
44 -- 50 |
-22.0891 kcal/mol |
5.35824 kcal/mol |
4.62773 kcal/mol |
132 156@LB@ | |@LB@5'-UUC...CUACU A A A GGGGA...ACU-3'@LB@ GGGGGGU GU UC GGUAC UGGG@LB@ :||:||| || :| ||||| ||||@LB@ UCCUCCA CA GG CCAUG ACCC@LB@3'-UUU...CCGAU C A A UCGAUCGUAAAAU AAUAC...UCG-5'@LB@ | |@LB@ 51 14@LB@@LB@@LB@Energy -12.10 kcal/mol@LB@Hybridization Energy -22.0891 kcal/mol@LB@Unfolding Energy - mRNA 5.35824 kcal/mol@LB@Unfolding Energy - sRNA 4.62773 kcal/mol@LB@@LB@Position - mRNA 133 -- 155@LB@Position - sRNA 15 -- 50@LB@Position Seed - mRNA 133 -- 139@LB@Position Seed - sRNA 44 -- 50@LB@ |
| 193 |
0.01107 |
0.1919 |
b3532 |
bcsB |
-10.24 |
0.150531 |
226 -- 241 |
15 -- 35 |
regulator of cellulose synthase cyclic di-GMP binding |
|
_____________225___________________242\n_____________|_____________________|\n5'-AAG...GAUUU_______G_____________GAUGA...UCA-3'\n______________GUGCAGU__GC____UAUGGG\n______________||:|||:__||____||||||\n______________CAUGUCG__CG____AUACCC\n3'-UUU...AGGAC_______AU__UAAA______AAUAC...UCG-5'\n_____________|_____________________|\n_____________36____________________14\n |
226 -- 232 |
29 -- 35 |
-18.7324 kcal/mol |
7.03896 kcal/mol |
1.4496 kcal/mol |
225 242@LB@ | |@LB@5'-AAG...GAUUU G GAUGA...UCA-3'@LB@ GUGCAGU GC UAUGGG@LB@ ||:|||: || ||||||@LB@ CAUGUCG CG AUACCC@LB@3'-UUU...AGGAC AU UAAA AAUAC...UCG-5'@LB@ | |@LB@ 36 14@LB@@LB@@LB@Energy -10.24 kcal/mol@LB@Hybridization Energy -18.7324 kcal/mol@LB@Unfolding Energy - mRNA 7.03896 kcal/mol@LB@Unfolding Energy - sRNA 1.4496 kcal/mol@LB@@LB@Position - mRNA 226 -- 241@LB@Position - sRNA 15 -- 35@LB@Position Seed - mRNA 226 -- 232@LB@Position Seed - sRNA 29 -- 35@LB@ |
