| 1 |
0 |
0 |
b3824 |
rhtB |
-9.47 |
0.207720 |
26 -- 71 |
1 -- 43 |
homoserine homoserine lactone and S-methyl-methionine efflux pump |
|
_____________25_________________________________________________72\n_____________|__________________________________________________|\n5'-ACG...UCAGC___C__A____AAAA_____AAAC_______CUCU_________CC____CUUUU...ACC-3'\n______________GGU_CC_UGGU____GCAGC____GCGUUUU________UGUUU__CAGU\n______________|||_||_||||____:||||____||:||||________|||||__|||:\n______________CCA_GG_ACCA____UGUCG____CGUAAAA________ACAAA__GUCG\n3'-UUU...CUCCA___A________________AU_________UACCCAAU_____AA____-5'\n_____________|_________________________________________________|\n_____________44________________________________________________1\n |
50 -- 56 |
20 -- 26 |
-25.7164 kcal/mol |
11.6412 kcal/mol |
4.6088 kcal/mol |
25 72@LB@ | |@LB@5'-ACG...UCAGC C A AAAA AAAC CUCU CC CUUUU...ACC-3'@LB@ GGU CC UGGU GCAGC GCGUUUU UGUUU CAGU@LB@ ||| || |||| :|||| ||:|||| ||||| |||:@LB@ CCA GG ACCA UGUCG CGUAAAA ACAAA GUCG@LB@3'-UUU...CUCCA A AU UACCCAAU AA -5'@LB@ | |@LB@ 44 1@LB@@LB@@LB@Energy -9.47 kcal/mol@LB@Hybridization Energy -25.7164 kcal/mol@LB@Unfolding Energy - mRNA 11.6412 kcal/mol@LB@Unfolding Energy - sRNA 4.6088 kcal/mol@LB@@LB@Position - mRNA 26 -- 71@LB@Position - sRNA 1 -- 43@LB@Position Seed - mRNA 50 -- 56@LB@Position Seed - sRNA 20 -- 26@LB@ |
| 3 |
2.088e-07 |
0.000234 |
b2077 |
iceT |
-18.53 |
0.000593 |
226 -- 254 |
1 -- 30 |
putative citrate/iron-citrate/zinc-citrate efflux transporter |
|
_____________225____________________________255\n_____________|______________________________|\n5'-CGG...CACCC_______A_______A_____GC_______UUCUU...UUC-3'\n______________GUUGGCA__UUGUGG_UUGUG__UUUCGGC\n______________|:|:|||__||:|||_||:||__||||:||\n______________CGAUCGU__AAUACC_AAUAC__AAAGUCG\n3'-UUU...CAUGU_______AA______C_____AA_______-5'\n_____________|_____________________________|\n_____________31____________________________1\n |
248 -- 254 |
1 -- 7 |
-30.4381 kcal/mol |
10.4245 kcal/mol |
1.48556 kcal/mol |
225 255@LB@ | |@LB@5'-CGG...CACCC A A GC UUCUU...UUC-3'@LB@ GUUGGCA UUGUGG UUGUG UUUCGGC@LB@ |:|:||| ||:||| ||:|| ||||:||@LB@ CGAUCGU AAUACC AAUAC AAAGUCG@LB@3'-UUU...CAUGU AA C AA -5'@LB@ | |@LB@ 31 1@LB@@LB@@LB@Energy -18.53 kcal/mol@LB@Hybridization Energy -30.4381 kcal/mol@LB@Unfolding Energy - mRNA 10.4245 kcal/mol@LB@Unfolding Energy - sRNA 1.48556 kcal/mol@LB@@LB@Position - mRNA 226 -- 254@LB@Position - sRNA 1 -- 30@LB@Position Seed - mRNA 248 -- 254@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 5 |
6.68e-06 |
0.00395 |
b1918 |
yecS |
-16.73 |
0.003069 |
259 -- 299 |
1 -- 36 |
ABC family putative inner membrane permease |
|
_____________258________________________________________300\n_____________|__________________________________________|\n5'-GGC...GGCUG______C_______ACUCAG___C__C_GC____________U-3'\n______________GGUAUA_GCU_GCA______UAU_GG_G__AUGUUUUUUGGC\n______________||||:|_|||_|||______|||_||_|__||||||||::||\n______________CCAUGU_CGA_CGU______AUA_CC_C__UACAAAAAGUCG\n3'-UUU...AAGGA__________U___AAA___________AA____________-5'\n_____________|_________________________________________|\n_____________37________________________________________1\n |
293 -- 299 |
1 -- 7 |
-28.0078 kcal/mol |
9.77847 kcal/mol |
1.49509 kcal/mol |
258 300@LB@ | |@LB@5'-GGC...GGCUG C ACUCAG C C GC U-3'@LB@ GGUAUA GCU GCA UAU GG G AUGUUUUUUGGC@LB@ ||||:| ||| ||| ||| || | ||||||||::||@LB@ CCAUGU CGA CGU AUA CC C UACAAAAAGUCG@LB@3'-UUU...AAGGA U AAA AA -5'@LB@ | |@LB@ 37 1@LB@@LB@@LB@Energy -16.73 kcal/mol@LB@Hybridization Energy -28.0078 kcal/mol@LB@Unfolding Energy - mRNA 9.77847 kcal/mol@LB@Unfolding Energy - sRNA 1.49509 kcal/mol@LB@@LB@Position - mRNA 259 -- 299@LB@Position - sRNA 1 -- 36@LB@Position Seed - mRNA 293 -- 299@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 12 |
4.171e-05 |
0.01168 |
b0814 |
ompX |
-14.35 |
0.017131 |
192 -- 226 |
1 -- 48 |
outer membrane protein X |
|
_____________191______________________________________________227\n_____________|________________________________________________|\n5'-CUG...CAUUU_________A___AAAAAAAUU__________________C_______ACUGG...CAC-3'\n______________GAGGUGGUU__UG_________GCA____________UGU_UUUCAGC\n______________|||||||||__||_________|||____________|||_|||||||\n______________CUCCACCAA__AC_________CGU____________ACA_AAAGUCG\n3'-UUU...GAUUC_________GG__CAUGUCGAU___AAAAUACCCAAU___A_______-5'\n_____________|_______________________________________________|\n_____________49______________________________________________1\n |
220 -- 226 |
1 -- 7 |
-27.166 kcal/mol |
8.20777 kcal/mol |
4.60955 kcal/mol |
191 227@LB@ | |@LB@5'-CUG...CAUUU A AAAAAAAUU C ACUGG...CAC-3'@LB@ GAGGUGGUU UG GCA UGU UUUCAGC@LB@ ||||||||| || ||| ||| |||||||@LB@ CUCCACCAA AC CGU ACA AAAGUCG@LB@3'-UUU...GAUUC GG CAUGUCGAU AAAAUACCCAAU A -5'@LB@ | |@LB@ 49 1@LB@@LB@@LB@Energy -14.35 kcal/mol@LB@Hybridization Energy -27.166 kcal/mol@LB@Unfolding Energy - mRNA 8.20777 kcal/mol@LB@Unfolding Energy - sRNA 4.60955 kcal/mol@LB@@LB@Position - mRNA 192 -- 226@LB@Position - sRNA 1 -- 48@LB@Position Seed - mRNA 220 -- 226@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 15 |
0.0001004 |
0.02121 |
b2416 |
ptsI |
-14.97 |
0.011388 |
179 -- 212 |
1 -- 32 |
PEP-protein phosphotransferase of PTS system (enzyme I) |
|
_____________178_________________________________213\n_____________|___________________________________|\n5'-GUG...AAAAU____CACA____AGG___________A___CA___AUUUU...CCG-3'\n______________CAGU____AGUA___UA_GGGUUAUG_UUU__GGC\n______________|||:____||:|___||_||||||||_|||__:||\n______________GUCG____UCGU___AU_CCCAAUAC_AAA__UCG\n3'-UUU...ACCAU____A_______AAA__A________A___AG___-5'\n_____________|__________________________________|\n_____________33_________________________________1\n |
197 -- 203 |
10 -- 16 |
-21.5882 kcal/mol |
5.12711 kcal/mol |
1.49075 kcal/mol |
178 213@LB@ | |@LB@5'-GUG...AAAAU CACA AGG A CA AUUUU...CCG-3'@LB@ CAGU AGUA UA GGGUUAUG UUU GGC@LB@ |||: ||:| || |||||||| ||| :||@LB@ GUCG UCGU AU CCCAAUAC AAA UCG@LB@3'-UUU...ACCAU A AAA A A AG -5'@LB@ | |@LB@ 33 1@LB@@LB@@LB@Energy -14.97 kcal/mol@LB@Hybridization Energy -21.5882 kcal/mol@LB@Unfolding Energy - mRNA 5.12711 kcal/mol@LB@Unfolding Energy - sRNA 1.49075 kcal/mol@LB@@LB@Position - mRNA 179 -- 212@LB@Position - sRNA 1 -- 32@LB@Position Seed - mRNA 197 -- 203@LB@Position Seed - sRNA 10 -- 16@LB@ |
| 16 |
0.000101 |
0.02121 |
b3428 |
glgP |
-10.27 |
0.148738 |
91 -- 131 |
1 -- 46 |
glycogen phosphorylase |
|
_____________90_____________________________________________132\n_____________|______________________________________________|\n5'-CCA...ACUGU__C_____G__CA___UCA____________CA____GA_______UGGCA...CGG-3'\n______________GG_GGUUU_UG__ACG___GGC____UAUGG___AUG__UUUUAGC\n______________||_||||:_||__||:___:||____|||||___|||__|||:|||\n______________CC_CCAAG_AC__UGU___UCG____AUACC___UAC__AAAGUCG\n3'-UUU...UUCCU__A_____G__CA___CGA___UAAA_____CAA___AA_______-5'\n_____________|_____________________________________________|\n_____________47____________________________________________1\n |
125 -- 131 |
1 -- 7 |
-28.7783 kcal/mol |
13.8975 kcal/mol |
4.60935 kcal/mol |
90 132@LB@ | |@LB@5'-CCA...ACUGU C G CA UCA CA GA UGGCA...CGG-3'@LB@ GG GGUUU UG ACG GGC UAUGG AUG UUUUAGC@LB@ || ||||: || ||: :|| ||||| ||| |||:|||@LB@ CC CCAAG AC UGU UCG AUACC UAC AAAGUCG@LB@3'-UUU...UUCCU A G CA CGA UAAA CAA AA -5'@LB@ | |@LB@ 47 1@LB@@LB@@LB@Energy -10.27 kcal/mol@LB@Hybridization Energy -28.7783 kcal/mol@LB@Unfolding Energy - mRNA 13.8975 kcal/mol@LB@Unfolding Energy - sRNA 4.60935 kcal/mol@LB@@LB@Position - mRNA 91 -- 131@LB@Position - sRNA 1 -- 46@LB@Position Seed - mRNA 125 -- 131@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 18 |
0.0001426 |
0.02662 |
b1824 |
yobF |
-14.57 |
0.014857 |
186 -- 218 |
1 -- 36 |
DUF2527 family heat-induced protein |
|
_____________185__________________________________219\n_____________|____________________________________|\n5'-GCC...AACGA____________UG______U__GGCA_________AAAGA...UGU-3'\n______________GGUACAGUU__C__UUUAUG_GU_____UUUUCAGU\n______________|||||||:|__|__||||||_||_____|||||||:\n______________CCAUGUCGA__G__AAAUAC_CA_____AAAAGUCG\n3'-UUU...AAGGA_________UC_UA______C__AUACA________-5'\n_____________|___________________________________|\n_____________37__________________________________1\n |
212 -- 218 |
1 -- 7 |
-24.9268 kcal/mol |
8.86182 kcal/mol |
1.49509 kcal/mol |
185 219@LB@ | |@LB@5'-GCC...AACGA UG U GGCA AAAGA...UGU-3'@LB@ GGUACAGUU C UUUAUG GU UUUUCAGU@LB@ |||||||:| | |||||| || |||||||:@LB@ CCAUGUCGA G AAAUAC CA AAAAGUCG@LB@3'-UUU...AAGGA UC UA C AUACA -5'@LB@ | |@LB@ 37 1@LB@@LB@@LB@Energy -14.57 kcal/mol@LB@Hybridization Energy -24.9268 kcal/mol@LB@Unfolding Energy - mRNA 8.86182 kcal/mol@LB@Unfolding Energy - sRNA 1.49509 kcal/mol@LB@@LB@Position - mRNA 186 -- 218@LB@Position - sRNA 1 -- 36@LB@Position Seed - mRNA 212 -- 218@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 22 |
0.0002072 |
0.03165 |
b2341 |
fadJ |
-8.08 |
0.343546 |
182 -- 217 |
1 -- 44 |
enoyl-CoA hydratase/epimerase and isomerase/3-hydroxyacyl-CoA dehydrogenase |
|
_____________181__________________________________________218\n_____________|____________________________________________|\n5'-CAU...GGCAA__________A________AAUA______AA____ACA______GUUUA...CGG-3'\n______________UGGUUCU_GG___GGC_GG______AUGG___AUG____UCAGC\n______________||||||:_||___:||_:|______||||___|||____|||||\n______________ACCAAGG_CC___UCG_UC______UACC___UAC____AGUCG\n3'-UUU...CCUCC_______A__AUG___A__GUAAAA____CAA___AAAA_____-5'\n_____________|___________________________________________|\n_____________45__________________________________________1\n |
182 -- 188 |
38 -- 44 |
-22.4043 kcal/mol |
9.71146 kcal/mol |
4.60934 kcal/mol |
181 218@LB@ | |@LB@5'-CAU...GGCAA A AAUA AA ACA GUUUA...CGG-3'@LB@ UGGUUCU GG GGC GG AUGG AUG UCAGC@LB@ ||||||: || :|| :| |||| ||| |||||@LB@ ACCAAGG CC UCG UC UACC UAC AGUCG@LB@3'-UUU...CCUCC A AUG A GUAAAA CAA AAAA -5'@LB@ | |@LB@ 45 1@LB@@LB@@LB@Energy -8.08 kcal/mol@LB@Hybridization Energy -22.4043 kcal/mol@LB@Unfolding Energy - mRNA 9.71146 kcal/mol@LB@Unfolding Energy - sRNA 4.60934 kcal/mol@LB@@LB@Position - mRNA 182 -- 217@LB@Position - sRNA 1 -- 44@LB@Position Seed - mRNA 182 -- 188@LB@Position Seed - sRNA 38 -- 44@LB@ |
| 25 |
0.0003503 |
0.04652 |
b3233 |
yhcB |
-13.45 |
0.029595 |
190 -- 239 |
1 -- 50 |
DUF1043 family inner membrane-anchored protein |
|
_____________189_______________________________________________________240\n_____________|_________________________________________________________|\n5'-UUU...ACAAC_____AU____CAUGA_____GA___U______UAAU_________GUCG_______AUCAU...CGU-3'\n______________GGGAG___GUU_____CCUGG__AUA_GC__GC______UGGGUUA______UCGGC\n______________:||||___|||_____|||||__|:|_||__||______|||||||______||:||\n______________UCCUC___CAA_____GGACC__UGU_CG__CG______ACCCAAU______AGUCG\n3'-UUU...CCGAU_____CAC_____________A_______AU__UAAAAU_______ACAAAA_____-5'\n_____________|________________________________________________________|\n_____________51_______________________________________________________1\n |
224 -- 230 |
12 -- 18 |
-32.3864 kcal/mol |
14.269 kcal/mol |
4.6634 kcal/mol |
189 240@LB@ | |@LB@5'-UUU...ACAAC AU CAUGA GA U UAAU GUCG AUCAU...CGU-3'@LB@ GGGAG GUU CCUGG AUA GC GC UGGGUUA UCGGC@LB@ :|||| ||| ||||| |:| || || ||||||| ||:||@LB@ UCCUC CAA GGACC UGU CG CG ACCCAAU AGUCG@LB@3'-UUU...CCGAU CAC A AU UAAAAU ACAAAA -5'@LB@ | |@LB@ 51 1@LB@@LB@@LB@Energy -13.45 kcal/mol@LB@Hybridization Energy -32.3864 kcal/mol@LB@Unfolding Energy - mRNA 14.269 kcal/mol@LB@Unfolding Energy - sRNA 4.6634 kcal/mol@LB@@LB@Position - mRNA 190 -- 239@LB@Position - sRNA 1 -- 50@LB@Position Seed - mRNA 224 -- 230@LB@Position Seed - sRNA 12 -- 18@LB@ |
| 26 |
0.0003609 |
0.04652 |
b0197 |
metQ |
-15.58 |
0.007466 |
80 -- 120 |
1 -- 43 |
DL-methionine transporter subunit |
|
_____________79___________________________________________121\n_____________|____________________________________________|\n5'-GUG...AAUAC___A________U_____U____C_____U____UUAA______UCGCA...UUA-3'\n______________GGU__CUGGUAU_GCUGG_CAUU___UGG_UUAU____UUCAGU\n______________|||__||||||:_|||:|_||||___|||_||||____|||||:\n______________CCA__GACCAUG_CGAUC_GUAA___ACC_AAUA____AAGUCG\n3'-UUU...CUCCA___AG_______U__________AAU___C____CAAA______-5'\n_____________|___________________________________________|\n_____________44__________________________________________1\n |
84 -- 90 |
32 -- 38 |
-33.3889 kcal/mol |
13.205 kcal/mol |
4.6088 kcal/mol |
79 121@LB@ | |@LB@5'-GUG...AAUAC A U U C U UUAA UCGCA...UUA-3'@LB@ GGU CUGGUAU GCUGG CAUU UGG UUAU UUCAGU@LB@ ||| ||||||: |||:| |||| ||| |||| |||||:@LB@ CCA GACCAUG CGAUC GUAA ACC AAUA AAGUCG@LB@3'-UUU...CUCCA AG U AAU C CAAA -5'@LB@ | |@LB@ 44 1@LB@@LB@@LB@Energy -15.58 kcal/mol@LB@Hybridization Energy -33.3889 kcal/mol@LB@Unfolding Energy - mRNA 13.205 kcal/mol@LB@Unfolding Energy - sRNA 4.6088 kcal/mol@LB@@LB@Position - mRNA 80 -- 120@LB@Position - sRNA 1 -- 43@LB@Position Seed - mRNA 84 -- 90@LB@Position Seed - sRNA 32 -- 38@LB@ |
