| 130 |
0.005552 |
0.1429 |
b1622 |
malY |
-10.60 |
0.128513 |
216 -- 278 |
1 -- 51 |
PLP-dependent beta-cystathionase and maltose regulon regulator |
|
_____________215_____________________________________________________________279\n_____________|_______________________________________________________________|\n5'-UCG...UUUCA____UC____A__G_CAUG___CA______ACACA_____A______CGCUGACCG_______ACUGC...UCA-3'\n______________AAGG__GUGG_UC_U____GCA__UGGUGU_____GUGGG_UUAUGU_________UUUCGGC\n______________||||__||||_||_|____:||__|:|::|_____:||||_||||||_________||||:||\n______________UUCC__CACC_AG_A____UGU__AUCGUA_____UACCC_AAUACA_________AAAGUCG\n3'-UUU...UCCGA____UC____A__G_CCA____CG______AAA______________A_______________-5'\n_____________|______________________________________________________________|\n_____________52_____________________________________________________________1\n |
272 -- 278 |
1 -- 7 |
-34.7892 kcal/mol |
19.4932 kcal/mol |
4.69283 kcal/mol |
215 279@LB@ | |@LB@5'-UCG...UUUCA UC A G CAUG CA ACACA A CGCUGACCG ACUGC...UCA-3'@LB@ AAGG GUGG UC U GCA UGGUGU GUGGG UUAUGU UUUCGGC@LB@ |||| |||| || | :|| |:|::| :|||| |||||| ||||:||@LB@ UUCC CACC AG A UGU AUCGUA UACCC AAUACA AAAGUCG@LB@3'-UUU...UCCGA UC A G CCA CG AAA A -5'@LB@ | |@LB@ 52 1@LB@@LB@@LB@Energy -10.60 kcal/mol@LB@Hybridization Energy -34.7892 kcal/mol@LB@Unfolding Energy - mRNA 19.4932 kcal/mol@LB@Unfolding Energy - sRNA 4.69283 kcal/mol@LB@@LB@Position - mRNA 216 -- 278@LB@Position - sRNA 1 -- 51@LB@Position Seed - mRNA 272 -- 278@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 137 |
0.006165 |
0.1512 |
b1024 |
pgaA |
-6.60 |
0.530802 |
267 -- 274 |
1 -- 8 |
biofilm adhesin polysaccharide PGA secretin; OM porin; poly-beta-1 6-N-acetyl-D-glucosamine export protein |
|
_____________266______275\n_____________|________|\n5'-CUC...CCGCA________AGCGA...CUG-3'\n______________UUUUUAGC\n______________||||:|||\n______________AAAAGUCG\n3'-UUU...AUACA________-5'\n_____________|_______|\n_____________9_______1\n |
268 -- 274 |
1 -- 7 |
-8.19691 kcal/mol |
0.802454 kcal/mol |
0.799201 kcal/mol |
266 275@LB@ | |@LB@5'-CUC...CCGCA AGCGA...CUG-3'@LB@ UUUUUAGC@LB@ ||||:|||@LB@ AAAAGUCG@LB@3'-UUU...AUACA -5'@LB@ | |@LB@ 9 1@LB@@LB@@LB@Energy -6.60 kcal/mol@LB@Hybridization Energy -8.19691 kcal/mol@LB@Unfolding Energy - mRNA 0.802454 kcal/mol@LB@Unfolding Energy - sRNA 0.799201 kcal/mol@LB@@LB@Position - mRNA 267 -- 274@LB@Position - sRNA 1 -- 8@LB@Position Seed - mRNA 268 -- 274@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 138 |
0.006247 |
0.1521 |
b1063 |
yceB |
-7.15 |
0.457702 |
84 -- 117 |
1 -- 32 |
lipoprotein DUF1439 family |
|
_____________83__________________________________118\n_____________|___________________________________|\n5'-UGC...CGCGG____CU_____CGC_______CCGCCG________UUUUU...ACC-3'\n______________CAGC__GUAUU____GGGUUG______UUUUCAGU\n______________||||__|:|||____|||||:______|||||||:\n______________GUCG__CGUAA____CCCAAU______AAAAGUCG\n3'-UUU...ACCAU____AU_____AAUA______ACA___________-5'\n_____________|__________________________________|\n_____________33_________________________________1\n |
111 -- 117 |
1 -- 7 |
-22.6034 kcal/mol |
13.9644 kcal/mol |
1.49075 kcal/mol |
83 118@LB@ | |@LB@5'-UGC...CGCGG CU CGC CCGCCG UUUUU...ACC-3'@LB@ CAGC GUAUU GGGUUG UUUUCAGU@LB@ |||| |:||| |||||: |||||||:@LB@ GUCG CGUAA CCCAAU AAAAGUCG@LB@3'-UUU...ACCAU AU AAUA ACA -5'@LB@ | |@LB@ 33 1@LB@@LB@@LB@Energy -7.15 kcal/mol@LB@Hybridization Energy -22.6034 kcal/mol@LB@Unfolding Energy - mRNA 13.9644 kcal/mol@LB@Unfolding Energy - sRNA 1.49075 kcal/mol@LB@@LB@Position - mRNA 84 -- 117@LB@Position - sRNA 1 -- 32@LB@Position Seed - mRNA 111 -- 117@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 140 |
0.006493 |
0.1559 |
b1916 |
sdiA |
-12.48 |
0.051059 |
182 -- 224 |
1 -- 50 |
quorum-sensing transcriptional activator |
|
_____________181_________________________________________________225\n_____________|___________________________________________________|\n5'-UGU...CUCUC_____C_____G_____U______U___GGAUAA___AU____________UGGCG...AGG-3'\n______________AGGGG___GUU_C_GGU_UA_CUA_GCA_______GG_____UUUUUCAGC\n______________|||:|___|||_|_|||_:|_|||_|||_______||_____|||||||||\n______________UCCUC___CAA_G_CCA_GU_GAU_CGU_______CC_____AAAAAGUCG\n3'-UUU...CCGAU_____CAC___G_A___U__C_______AAAAUAC__AAUAC_________-5'\n_____________|__________________________________________________|\n_____________51_________________________________________________1\n |
218 -- 224 |
1 -- 7 |
-26.3158 kcal/mol |
9.17132 kcal/mol |
4.6634 kcal/mol |
181 225@LB@ | |@LB@5'-UGU...CUCUC C G U U GGAUAA AU UGGCG...AGG-3'@LB@ AGGGG GUU C GGU UA CUA GCA GG UUUUUCAGC@LB@ |||:| ||| | ||| :| ||| ||| || |||||||||@LB@ UCCUC CAA G CCA GU GAU CGU CC AAAAAGUCG@LB@3'-UUU...CCGAU CAC G A U C AAAAUAC AAUAC -5'@LB@ | |@LB@ 51 1@LB@@LB@@LB@Energy -12.48 kcal/mol@LB@Hybridization Energy -26.3158 kcal/mol@LB@Unfolding Energy - mRNA 9.17132 kcal/mol@LB@Unfolding Energy - sRNA 4.6634 kcal/mol@LB@@LB@Position - mRNA 182 -- 224@LB@Position - sRNA 1 -- 50@LB@Position Seed - mRNA 218 -- 224@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 144 |
0.006813 |
0.158 |
b0111 |
ampE |
-6.38 |
0.559697 |
294 -- 300 |
1 -- 7 |
ampicillin resistance inner membrane protein; putative signaling protein in beta-lactamase regulation |
|
_____________293____300\n_____________|______|\n5'-CUU...CGUUC_______-3'\n______________UUUCGGC\n______________||||:||\n______________AAAGUCG\n3'-UUU...UACAA_______-5'\n_____________|______|\n_____________8______1\n |
294 -- 300 |
1 -- 7 |
-7.27697 kcal/mol |
0.0992979 kcal/mol |
0.796773 kcal/mol |
293 300@LB@ | |@LB@5'-CUU...CGUUC -3'@LB@ UUUCGGC@LB@ ||||:||@LB@ AAAGUCG@LB@3'-UUU...UACAA -5'@LB@ | |@LB@ 8 1@LB@@LB@@LB@Energy -6.38 kcal/mol@LB@Hybridization Energy -7.27697 kcal/mol@LB@Unfolding Energy - mRNA 0.0992979 kcal/mol@LB@Unfolding Energy - sRNA 0.796773 kcal/mol@LB@@LB@Position - mRNA 294 -- 300@LB@Position - sRNA 1 -- 7@LB@Position Seed - mRNA 294 -- 300@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 145 |
0.006858 |
0.158 |
b2079 |
baeR |
-14.59 |
0.014658 |
61 -- 107 |
1 -- 46 |
response regulator in two-component regulatory system with BaeS |
|
_____________60________________________________________________108\n_____________|_________________________________________________|\n5'-CAG...CCAGC__C______G__C__G________A____CC__AACAU____GA_____ACAUA...CGA-3'\n______________GG_GGUUCC_GG_UG_GGCUGGCG_UUUG__UG_____UGUU____AGC\n______________||_||||||_||_|:_:|||:||:_|||:__||_____||||____|||\n______________CC_CCAAGG_CC_AU_UCGAUCGU_AAAU__AC_____ACAA____UCG\n3'-UUU...UUCCU__A______A_____G________A________CCAAU____AAAG___-5'\n_____________|________________________________________________|\n_____________47_______________________________________________1\n |
78 -- 84 |
24 -- 30 |
-36.7072 kcal/mol |
17.5074 kcal/mol |
4.60935 kcal/mol |
60 108@LB@ | |@LB@5'-CAG...CCAGC C G C G A CC AACAU GA ACAUA...CGA-3'@LB@ GG GGUUCC GG UG GGCUGGCG UUUG UG UGUU AGC@LB@ || |||||| || |: :|||:||: |||: || |||| |||@LB@ CC CCAAGG CC AU UCGAUCGU AAAU AC ACAA UCG@LB@3'-UUU...UUCCU A A G A CCAAU AAAG -5'@LB@ | |@LB@ 47 1@LB@@LB@@LB@Energy -14.59 kcal/mol@LB@Hybridization Energy -36.7072 kcal/mol@LB@Unfolding Energy - mRNA 17.5074 kcal/mol@LB@Unfolding Energy - sRNA 4.60935 kcal/mol@LB@@LB@Position - mRNA 61 -- 107@LB@Position - sRNA 1 -- 46@LB@Position Seed - mRNA 78 -- 84@LB@Position Seed - sRNA 24 -- 30@LB@ |
| 150 |
0.00729 |
0.1634 |
b3184 |
yhbE |
-11.29 |
0.093352 |
190 -- 235 |
1 -- 50 |
EamA family inner membrane putative transporter |
|
_____________189_________________________________________________236\n_____________|___________________________________________________|\n5'-AAG...UUGCA____AUAC___A____AA_____A____GGCAU___CAUUC__________GCUCA...UGG-3'\n______________GGGA____GGU___UG__GCAGC_GGCA_____UGG________UUUUGGC\n______________:|||____|||___||__:||||_:|||_____|||________|||::||\n______________UCCU____CCA___AC__UGUCG_UCGU_____ACC________AAAGUCG\n3'-UUU...CCGAU____CCA____AGG__CA_____A____AAAAU___CAAUACAA_______-5'\n_____________|__________________________________________________|\n_____________51_________________________________________________1\n |
229 -- 235 |
1 -- 7 |
-25.8939 kcal/mol |
9.93833 kcal/mol |
4.6634 kcal/mol |
189 236@LB@ | |@LB@5'-AAG...UUGCA AUAC A AA A GGCAU CAUUC GCUCA...UGG-3'@LB@ GGGA GGU UG GCAGC GGCA UGG UUUUGGC@LB@ :||| ||| || :|||| :||| ||| |||::||@LB@ UCCU CCA AC UGUCG UCGU ACC AAAGUCG@LB@3'-UUU...CCGAU CCA AGG CA A AAAAU CAAUACAA -5'@LB@ | |@LB@ 51 1@LB@@LB@@LB@Energy -11.29 kcal/mol@LB@Hybridization Energy -25.8939 kcal/mol@LB@Unfolding Energy - mRNA 9.93833 kcal/mol@LB@Unfolding Energy - sRNA 4.6634 kcal/mol@LB@@LB@Position - mRNA 190 -- 235@LB@Position - sRNA 1 -- 50@LB@Position Seed - mRNA 229 -- 235@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 151 |
0.007423 |
0.1652 |
b2895 |
fldB |
-9.53 |
0.202764 |
191 -- 224 |
1 -- 31 |
flavodoxin 2 |
|
_____________190__________________________________225\n_____________|____________________________________|\n5'-CGG...CGAGA____UA____AUGAA_______CU_______A____UCCAG...AUA-3'\n______________AGCU__CGUU_____UAUGGGU____UUUUU_CGGU\n______________||||__|:||_____|||||||____|||||_|:|:\n______________UCGA__GUAA_____AUACCCA____AAAAA_GUCG\n3'-UUU...CCAUG____UC____A___________AUAC__________-5'\n_____________|___________________________________|\n_____________32__________________________________1\n |
206 -- 212 |
14 -- 20 |
-17.4845 kcal/mol |
6.4701 kcal/mol |
1.48722 kcal/mol |
190 225@LB@ | |@LB@5'-CGG...CGAGA UA AUGAA CU A UCCAG...AUA-3'@LB@ AGCU CGUU UAUGGGU UUUUU CGGU@LB@ |||| |:|| ||||||| ||||| |:|:@LB@ UCGA GUAA AUACCCA AAAAA GUCG@LB@3'-UUU...CCAUG UC A AUAC -5'@LB@ | |@LB@ 32 1@LB@@LB@@LB@Energy -9.53 kcal/mol@LB@Hybridization Energy -17.4845 kcal/mol@LB@Unfolding Energy - mRNA 6.4701 kcal/mol@LB@Unfolding Energy - sRNA 1.48722 kcal/mol@LB@@LB@Position - mRNA 191 -- 224@LB@Position - sRNA 1 -- 31@LB@Position Seed - mRNA 206 -- 212@LB@Position Seed - sRNA 14 -- 20@LB@ |
| 155 |
0.007835 |
0.1694 |
b2239 |
glpQ |
-10.90 |
0.112133 |
59 -- 106 |
1 -- 45 |
periplasmic glycerophosphodiester phosphodiesterase |
|
_____________58________________________________________________107\n_____________|_________________________________________________|\n5'-CGG...ACACC____AC_____C__CUG__A_____GC_______UA____A__GG____AGCAU...UCA-3'\n______________GUGG__UUCUU_GG___GG_UGGCG__UUUAUGG___AUG_UU__CGGC\n______________||||__|||:|_||___:|_|:||:__|||||||___|||_||__|:||\n______________CACC__AAGGA_CC___UC_AUCGU__AAAUACC___UAC_AA__GUCG\n3'-UUU...UCCUC______________AUG__G_____A________CAA___A__AA____-5'\n_____________|________________________________________________|\n_____________46_______________________________________________1\n |
86 -- 92 |
16 -- 22 |
-29.5358 kcal/mol |
14.0238 kcal/mol |
4.60935 kcal/mol |
58 107@LB@ | |@LB@5'-CGG...ACACC AC C CUG A GC UA A GG AGCAU...UCA-3'@LB@ GUGG UUCUU GG GG UGGCG UUUAUGG AUG UU CGGC@LB@ |||| |||:| || :| |:||: ||||||| ||| || |:||@LB@ CACC AAGGA CC UC AUCGU AAAUACC UAC AA GUCG@LB@3'-UUU...UCCUC AUG G A CAA A AA -5'@LB@ | |@LB@ 46 1@LB@@LB@@LB@Energy -10.90 kcal/mol@LB@Hybridization Energy -29.5358 kcal/mol@LB@Unfolding Energy - mRNA 14.0238 kcal/mol@LB@Unfolding Energy - sRNA 4.60935 kcal/mol@LB@@LB@Position - mRNA 59 -- 106@LB@Position - sRNA 1 -- 45@LB@Position Seed - mRNA 86 -- 92@LB@Position Seed - sRNA 16 -- 22@LB@ |
| 157 |
0.007972 |
0.1694 |
b4350 |
hsdR |
-17.86 |
0.001148 |
15 -- 50 |
1 -- 35 |
endonuclease R Type I restriction enzyme |
|
_____________14____________________________________51\n_____________|_____________________________________|\n5'-UAG...UCAUA_____UC__U___GAAUCA____AG____________UACUA...ACA-3'\n______________GUACA__CU_GCA_______GGU__AUGUUUUUCGGC\n______________|||||__||_|||_______|||__|||||||||:||\n______________CAUGU__GA_CGU_______CCA__UACAAAAAGUCG\n3'-UUU...AGGAC_____C___U___AAAAUAC___A_____________-5'\n_____________|____________________________________|\n_____________36___________________________________1\n |
44 -- 50 |
1 -- 7 |
-27.1826 kcal/mol |
7.83025 kcal/mol |
1.49508 kcal/mol |
14 51@LB@ | |@LB@5'-UAG...UCAUA UC U GAAUCA AG UACUA...ACA-3'@LB@ GUACA CU GCA GGU AUGUUUUUCGGC@LB@ ||||| || ||| ||| |||||||||:||@LB@ CAUGU GA CGU CCA UACAAAAAGUCG@LB@3'-UUU...AGGAC C U AAAAUAC A -5'@LB@ | |@LB@ 36 1@LB@@LB@@LB@Energy -17.86 kcal/mol@LB@Hybridization Energy -27.1826 kcal/mol@LB@Unfolding Energy - mRNA 7.83025 kcal/mol@LB@Unfolding Energy - sRNA 1.49508 kcal/mol@LB@@LB@Position - mRNA 15 -- 50@LB@Position - sRNA 1 -- 35@LB@Position Seed - mRNA 44 -- 50@LB@Position Seed - sRNA 1 -- 7@LB@ |
