| 58 |
0.001429 |
0.08147 |
b0698 |
kdpA |
-14.04 |
0.020858 |
136 -- 172 |
7 -- 35 |
potassium translocating ATPase subunit A |
|
_____________135___________________________________173\n_____________|_____________________________________|\n5'-GCU...CCGGC____U___________UAUUAC________CUG____AUGCC...ACA-3'\n______________GUAU_GCUGGUGUUUU______UGGGUUAU___GUUU\n______________|||:_|||:|::||||______||||||||___||||\n______________CAUG_CGAUCGUAAAA______ACCCAAUA___CAAA\n3'-UUU...AGGAC____U___________U____________________AAGUCG-5'\n_____________|_____________________________________|\n_____________36____________________________________6\n |
159 -- 165 |
11 -- 17 |
-23.8836 kcal/mol |
8.35779 kcal/mol |
1.49058 kcal/mol |
135 173@LB@ | |@LB@5'-GCU...CCGGC U UAUUAC CUG AUGCC...ACA-3'@LB@ GUAU GCUGGUGUUUU UGGGUUAU GUUU@LB@ |||: |||:|::|||| |||||||| ||||@LB@ CAUG CGAUCGUAAAA ACCCAAUA CAAA@LB@3'-UUU...AGGAC U U AAGUCG-5'@LB@ | |@LB@ 36 6@LB@@LB@@LB@Energy -14.04 kcal/mol@LB@Hybridization Energy -23.8836 kcal/mol@LB@Unfolding Energy - mRNA 8.35779 kcal/mol@LB@Unfolding Energy - sRNA 1.49058 kcal/mol@LB@@LB@Position - mRNA 136 -- 172@LB@Position - sRNA 7 -- 35@LB@Position Seed - mRNA 159 -- 165@LB@Position Seed - sRNA 11 -- 17@LB@ |
| 135 |
0.005891 |
0.146 |
b3009 |
yghB |
-12.71 |
0.045213 |
257 -- 299 |
7 -- 46 |
general envelope maintenance protein; DedA family inner membrane protein; putative multidrug efflux transporter |
|
_____________256_________________________________________300\n_____________|___________________________________________|\n5'-UCU...GCGCU__C__A____CA___U_________GUUUACUUU__C______G-3'\n______________GG_GG_UCCU__UAU_GUUAGCGUU_________GU_AUGUUU\n______________||_||_||||__||:_|:||||:||_________||_||||||\n______________CC_CC_AGGA__AUG_CGAUCGUAA_________CA_UACAAA\n3'-UUU...UUCCU__A__A____CC___U_________AAUACC_____A______AAGUCG-5'\n_____________|___________________________________________|\n_____________47__________________________________________6\n |
275 -- 281 |
22 -- 28 |
-27.0814 kcal/mol |
9.76724 kcal/mol |
4.60844 kcal/mol |
256 300@LB@ | |@LB@5'-UCU...GCGCU C A CA U GUUUACUUU C G-3'@LB@ GG GG UCCU UAU GUUAGCGUU GU AUGUUU@LB@ || || |||| ||: |:||||:|| || ||||||@LB@ CC CC AGGA AUG CGAUCGUAA CA UACAAA@LB@3'-UUU...UUCCU A A CC U AAUACC A AAGUCG-5'@LB@ | |@LB@ 47 6@LB@@LB@@LB@Energy -12.71 kcal/mol@LB@Hybridization Energy -27.0814 kcal/mol@LB@Unfolding Energy - mRNA 9.76724 kcal/mol@LB@Unfolding Energy - sRNA 4.60844 kcal/mol@LB@@LB@Position - mRNA 257 -- 299@LB@Position - sRNA 7 -- 46@LB@Position Seed - mRNA 275 -- 281@LB@Position Seed - sRNA 22 -- 28@LB@ |
| 197 |
0.01153 |
0.1967 |
b0610 |
rnk |
-10.49 |
0.135367 |
130 -- 162 |
7 -- 39 |
regulator of nucleoside diphosphate kinase |
|
_____________129__________________________________163\n_____________|____________________________________|\n5'-UCU...CGCCG___________G__G_____CUUU____________AUCUG...CGU-3'\n______________CCUG__ACGGU_AG_GUUUU____UGGG_UAUGUUU\n______________||||__||:|:_||_:||||____||||_|||||||\n______________GGAC__UGUCG_UC_UAAAA____ACCC_AUACAAA\n3'-UUU...ACCAA____CA_____A__G_____U_______A_______AAGUCG-5'\n_____________|____________________________________|\n_____________40___________________________________6\n |
156 -- 162 |
7 -- 13 |
-25.6411 kcal/mol |
10.5512 kcal/mol |
4.60345 kcal/mol |
129 163@LB@ | |@LB@5'-UCU...CGCCG G G CUUU AUCUG...CGU-3'@LB@ CCUG ACGGU AG GUUUU UGGG UAUGUUU@LB@ |||| ||:|: || :|||| |||| |||||||@LB@ GGAC UGUCG UC UAAAA ACCC AUACAAA@LB@3'-UUU...ACCAA CA A G U A AAGUCG-5'@LB@ | |@LB@ 40 6@LB@@LB@@LB@Energy -10.49 kcal/mol@LB@Hybridization Energy -25.6411 kcal/mol@LB@Unfolding Energy - mRNA 10.5512 kcal/mol@LB@Unfolding Energy - sRNA 4.60345 kcal/mol@LB@@LB@Position - mRNA 130 -- 162@LB@Position - sRNA 7 -- 39@LB@Position Seed - mRNA 156 -- 162@LB@Position Seed - sRNA 7 -- 13@LB@ |
| 73 |
0.002141 |
0.09621 |
b0740 |
tolB |
-11.17 |
0.098836 |
117 -- 150 |
8 -- 46 |
periplasmic protein |
|
_____________116______________________________________151\n_____________|________________________________________|\n5'-UCC...GCCAC______________GUUUUGU___________________AACAU...CCG-3'\n______________GG_GGUU_CUGGUA_______GUAUUUUA___GUU_UGUU\n______________||_||||_||||||_______|:||||||___|||_||||\n______________CC_CCAA_GACCAU_______CGUAAAAU___CAA_ACAA\n3'-UUU...UUCCU__A____G______GUCGAU_________ACC___U____AAAGUCG-5'\n_____________|________________________________________|\n_____________47_______________________________________7\n |
137 -- 143 |
19 -- 25 |
-23.6895 kcal/mol |
7.90884 kcal/mol |
4.60831 kcal/mol |
116 151@LB@ | |@LB@5'-UCC...GCCAC GUUUUGU AACAU...CCG-3'@LB@ GG GGUU CUGGUA GUAUUUUA GUU UGUU@LB@ || |||| |||||| |:|||||| ||| ||||@LB@ CC CCAA GACCAU CGUAAAAU CAA ACAA@LB@3'-UUU...UUCCU A G GUCGAU ACC U AAAGUCG-5'@LB@ | |@LB@ 47 7@LB@@LB@@LB@Energy -11.17 kcal/mol@LB@Hybridization Energy -23.6895 kcal/mol@LB@Unfolding Energy - mRNA 7.90884 kcal/mol@LB@Unfolding Energy - sRNA 4.60831 kcal/mol@LB@@LB@Position - mRNA 117 -- 150@LB@Position - sRNA 8 -- 46@LB@Position Seed - mRNA 137 -- 143@LB@Position Seed - sRNA 19 -- 25@LB@ |
| 100 |
0.003656 |
0.1229 |
b2287 |
nuoB |
-12.04 |
0.064387 |
31 -- 70 |
8 -- 47 |
NADH:ubiquinone oxidoreductase chain B |
|
_____________30___________________________________________71\n_____________|____________________________________________|\n5'-CAU...CGGCU____A__C___G___A__________AU______UU________ACUGG...UUA-3'\n______________GGGU_GG_UUU_UGG___AGCU_GCA__UUUUAU___UUGUGUU\n______________:|||_||_||:_|||___||||_|||__||||||___||:||||\n______________UCCA_CC_AAG_ACC___UCGA_CGU__AAAAUA___AAUACAA\n3'-UUU...AUUCC___________G___AUG____U___________CCC_______AAAGUCG-5'\n_____________|____________________________________________|\n_____________48___________________________________________7\n |
64 -- 70 |
8 -- 14 |
-25.7516 kcal/mol |
9.10307 kcal/mol |
4.60908 kcal/mol |
30 71@LB@ | |@LB@5'-CAU...CGGCU A C G A AU UU ACUGG...UUA-3'@LB@ GGGU GG UUU UGG AGCU GCA UUUUAU UUGUGUU@LB@ :||| || ||: ||| |||| ||| |||||| ||:||||@LB@ UCCA CC AAG ACC UCGA CGU AAAAUA AAUACAA@LB@3'-UUU...AUUCC G AUG U CCC AAAGUCG-5'@LB@ | |@LB@ 48 7@LB@@LB@@LB@Energy -12.04 kcal/mol@LB@Hybridization Energy -25.7516 kcal/mol@LB@Unfolding Energy - mRNA 9.10307 kcal/mol@LB@Unfolding Energy - sRNA 4.60908 kcal/mol@LB@@LB@Position - mRNA 31 -- 70@LB@Position - sRNA 8 -- 47@LB@Position Seed - mRNA 64 -- 70@LB@Position Seed - sRNA 8 -- 14@LB@ |
| 116 |
0.004845 |
0.1404 |
b2277 |
nuoM |
-9.49 |
0.205960 |
1 -- 40 |
8 -- 43 |
NADH:ubiquinone oxidoreductase membrane subunit M |
|
______________1___________________________________________41\n______________|___________________________________________|\n___________5'-_____G______________CUGUUG____UACUGC____A___AAGGA...UGA-3'\n______________GG_UC_UGGU___GCUGGCA______AUGG______GUUG_GUU\n______________||_||_||||___|||:|||______||||______|||:_|||\n______________CC_AG_ACCA___CGAUCGU______UACC______CAAU_CAA\n3'-UUU...CUCCA__A__G____UGU_______AAAA________________A___AAAGUCG-5'\n_____________|____________________________________________|\n_____________44___________________________________________7\n |
10 -- 16 |
24 -- 30 |
-25.9982 kcal/mol |
11.9029 kcal/mol |
4.60748 kcal/mol |
1 41@LB@ | |@LB@ 5'- G CUGUUG UACUGC A AAGGA...UGA-3'@LB@ GG UC UGGU GCUGGCA AUGG GUUG GUU@LB@ || || |||| |||:||| |||| |||: |||@LB@ CC AG ACCA CGAUCGU UACC CAAU CAA@LB@3'-UUU...CUCCA A G UGU AAAA A AAAGUCG-5'@LB@ | |@LB@ 44 7@LB@@LB@@LB@Energy -9.49 kcal/mol@LB@Hybridization Energy -25.9982 kcal/mol@LB@Unfolding Energy - mRNA 11.9029 kcal/mol@LB@Unfolding Energy - sRNA 4.60748 kcal/mol@LB@@LB@Position - mRNA 1 -- 40@LB@Position - sRNA 8 -- 43@LB@Position Seed - mRNA 10 -- 16@LB@Position Seed - sRNA 24 -- 30@LB@ |
| 52 |
0.001222 |
0.07744 |
b2217 |
rcsB |
-14.74 |
0.013297 |
68 -- 91 |
9 -- 38 |
response regulator in two-component regulatory system with RcsC and YojN |
|
_____________67_______________________________92\n_____________|________________________________|\n5'-AAC...UAAAU_______CC___A___________________GAAAC...GCG-3'\n______________CUGGUAC__GGC_AGCA________GUUAUGU\n______________|||||||__:||_||||________|||||||\n______________GACCAUG__UCG_UCGU________CAAUACA\n3'-UUU...CCAAG____________A____AAAAUACC_______AAAAGUCG-5'\n_____________|________________________________|\n_____________39_______________________________8\n |
85 -- 91 |
9 -- 15 |
-24.0406 kcal/mol |
4.76673 kcal/mol |
4.53501 kcal/mol |
67 92@LB@ | |@LB@5'-AAC...UAAAU CC A GAAAC...GCG-3'@LB@ CUGGUAC GGC AGCA GUUAUGU@LB@ ||||||| :|| |||| |||||||@LB@ GACCAUG UCG UCGU CAAUACA@LB@3'-UUU...CCAAG A AAAAUACC AAAAGUCG-5'@LB@ | |@LB@ 39 8@LB@@LB@@LB@Energy -14.74 kcal/mol@LB@Hybridization Energy -24.0406 kcal/mol@LB@Unfolding Energy - mRNA 4.76673 kcal/mol@LB@Unfolding Energy - sRNA 4.53501 kcal/mol@LB@@LB@Position - mRNA 68 -- 91@LB@Position - sRNA 9 -- 38@LB@Position Seed - mRNA 85 -- 91@LB@Position Seed - sRNA 9 -- 15@LB@ |
| 89 |
0.002865 |
0.1082 |
b2378 |
lpxP |
-9.84 |
0.178666 |
41 -- 76 |
9 -- 35 |
palmitoleoyl-acyl carrier protein (ACP)-dependent acyltransferase |
|
_____________40____________________________________77\n_____________|_____________________________________|\n5'-AUU...AUAAA______AUACC_____C____CUCCUCGU________CCUGA...CUU-3'\n______________GUACAG_____GCAUU__AUG________GGUUAUGU\n______________||||||_____|||||__|||________||||||||\n______________CAUGUC_____CGUAA__UAC________CCAAUACA\n3'-UUU...AGGAC______GAU_______AA___________________AAAAGUCG-5'\n_____________|_____________________________________|\n_____________36____________________________________8\n |
70 -- 76 |
9 -- 15 |
-19.6308 kcal/mol |
8.30521 kcal/mol |
1.48708 kcal/mol |
40 77@LB@ | |@LB@5'-AUU...AUAAA AUACC C CUCCUCGU CCUGA...CUU-3'@LB@ GUACAG GCAUU AUG GGUUAUGU@LB@ |||||| ||||| ||| ||||||||@LB@ CAUGUC CGUAA UAC CCAAUACA@LB@3'-UUU...AGGAC GAU AA AAAAGUCG-5'@LB@ | |@LB@ 36 8@LB@@LB@@LB@Energy -9.84 kcal/mol@LB@Hybridization Energy -19.6308 kcal/mol@LB@Unfolding Energy - mRNA 8.30521 kcal/mol@LB@Unfolding Energy - sRNA 1.48708 kcal/mol@LB@@LB@Position - mRNA 41 -- 76@LB@Position - sRNA 9 -- 35@LB@Position Seed - mRNA 70 -- 76@LB@Position Seed - sRNA 9 -- 15@LB@ |
| 146 |
0.006865 |
0.158 |
b2701 |
mltB |
-8.70 |
0.277719 |
77 -- 106 |
9 -- 36 |
membrane-bound lytic murein transglycosylase B |
|
_____________76______________________________107\n_____________|_______________________________|\n5'-AGA...UAAAA________G__G_GAAUGAGU__A_______AAAGU...GAA-3'\n______________GG_AUAGC_AG_G________UG_GUUAUGU\n______________||_|:|||_||_:________||_|||||||\n______________CC_UGUCG_UC_U________AC_CAAUACA\n3'-UUU...AAGGA__A_____A__G_AAAAU_____C_______AAAAGUCG-5'\n_____________|_______________________________|\n_____________37______________________________8\n |
100 -- 106 |
9 -- 15 |
-15.8871 kcal/mol |
5.69864 kcal/mol |
1.48926 kcal/mol |
76 107@LB@ | |@LB@5'-AGA...UAAAA G G GAAUGAGU A AAAGU...GAA-3'@LB@ GG AUAGC AG G UG GUUAUGU@LB@ || |:||| || : || |||||||@LB@ CC UGUCG UC U AC CAAUACA@LB@3'-UUU...AAGGA A A G AAAAU C AAAAGUCG-5'@LB@ | |@LB@ 37 8@LB@@LB@@LB@Energy -8.70 kcal/mol@LB@Hybridization Energy -15.8871 kcal/mol@LB@Unfolding Energy - mRNA 5.69864 kcal/mol@LB@Unfolding Energy - sRNA 1.48926 kcal/mol@LB@@LB@Position - mRNA 77 -- 106@LB@Position - sRNA 9 -- 36@LB@Position Seed - mRNA 100 -- 106@LB@Position Seed - sRNA 9 -- 15@LB@ |
| 164 |
0.008548 |
0.1748 |
b0461 |
tomB |
-9.85 |
0.177976 |
15 -- 39 |
9 -- 30 |
Hha toxicity attenuator; conjugation-related protein |
|
_____________14________________________40\n_____________|_________________________|\n5'-UGC...UUAGU________GAAAAA___A__CC___CCCGC...AUC-3'\n______________GCUAGUAU______GUG_GU__UGU\n______________|||||:||______:||_||__|||\n______________CGAUCGUA______UAC_CA__ACA\n3'-UUU...CAUGU________AAA______C__AU___AAAAGUCG-5'\n_____________|_________________________|\n_____________31________________________8\n |
16 -- 22 |
23 -- 29 |
-13.2091 kcal/mol |
1.89111 kcal/mol |
1.4702 kcal/mol |
14 40@LB@ | |@LB@5'-UGC...UUAGU GAAAAA A CC CCCGC...AUC-3'@LB@ GCUAGUAU GUG GU UGU@LB@ |||||:|| :|| || |||@LB@ CGAUCGUA UAC CA ACA@LB@3'-UUU...CAUGU AAA C AU AAAAGUCG-5'@LB@ | |@LB@ 31 8@LB@@LB@@LB@Energy -9.85 kcal/mol@LB@Hybridization Energy -13.2091 kcal/mol@LB@Unfolding Energy - mRNA 1.89111 kcal/mol@LB@Unfolding Energy - sRNA 1.4702 kcal/mol@LB@@LB@Position - mRNA 15 -- 39@LB@Position - sRNA 9 -- 30@LB@Position Seed - mRNA 16 -- 22@LB@Position Seed - sRNA 23 -- 29@LB@ |
