| 85 |
0.001072 |
0.05733 |
pa4430 |
N/A |
-13.41 |
0.028331 |
184 -- 204 |
101 -- 120 |
cytochrome b |
|
_____________183___________________205\n_____________|_____________________|\n5'-ACC...GCGUG____AG__GAA__________ACAAG...UCU-3'\n______________GACC__GA___AGCCUGAUGA\n______________:|||__||___||||||||||\n______________UUGG__CU___UCGGACUACU\n3'-UUU...AGUUU____CA__AA___________CCUCU...GUU-5'\n_____________|_____________________|\n_____________121___________________100\n |
198 -- 204 |
101 -- 107 |
-22.7142 kcal/mol |
7.05943 kcal/mol |
2.2437 kcal/mol |
183 205@LB@ | |@LB@5'-ACC...GCGUG AG GAA ACAAG...UCU-3'@LB@ GACC GA AGCCUGAUGA@LB@ :||| || ||||||||||@LB@ UUGG CU UCGGACUACU@LB@3'-UUU...AGUUU CA AA CCUCU...GUU-5'@LB@ | |@LB@ 121 100@LB@@LB@@LB@Energy -13.41 kcal/mol@LB@Hybridization Energy -22.7142 kcal/mol@LB@Unfolding Energy - mRNA 7.05943 kcal/mol@LB@Unfolding Energy - sRNA 2.2437 kcal/mol@LB@@LB@Position - mRNA 184 -- 204@LB@Position - sRNA 101 -- 120@LB@Position Seed - mRNA 198 -- 204@LB@Position Seed - sRNA 101 -- 107@LB@ |
| 80 |
0.0008839 |
0.05078 |
pa0353 |
ilvD |
-13.41 |
0.028361 |
174 -- 187 |
107 -- 121 |
dihydroxy-acid dehydratase |
|
_____________173_____________188\n_____________|_______________|\n5'-UUC...AACCC_______________GCAGG...AGA-3'\n______________GAACC_UGAUUAGCC\n______________:||||_|||||||||\n______________UUUGG_ACUAAUCGG\n3'-UUU...CAGUU_____C_________ACUAC...GUU-5'\n_____________|_______________|\n_____________122_____________106\n |
181 -- 187 |
107 -- 113 |
-19.137 kcal/mol |
3.4906 kcal/mol |
2.23534 kcal/mol |
173 188@LB@ | |@LB@5'-UUC...AACCC GCAGG...AGA-3'@LB@ GAACC UGAUUAGCC@LB@ :|||| |||||||||@LB@ UUUGG ACUAAUCGG@LB@3'-UUU...CAGUU C ACUAC...GUU-5'@LB@ | |@LB@ 122 106@LB@@LB@@LB@Energy -13.41 kcal/mol@LB@Hybridization Energy -19.137 kcal/mol@LB@Unfolding Energy - mRNA 3.4906 kcal/mol@LB@Unfolding Energy - sRNA 2.23534 kcal/mol@LB@@LB@Position - mRNA 174 -- 187@LB@Position - sRNA 107 -- 121@LB@Position Seed - mRNA 181 -- 187@LB@Position Seed - sRNA 107 -- 113@LB@ |
| 188 |
0.00503 |
0.1227 |
pa1766 |
N/A |
-13.35 |
0.029524 |
230 -- 250 |
100 -- 120 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________229___________________251\n_____________|_____________________|\n5'-CGA...GACCU_____C__AA___G_______CAUCA...ACC-3'\n______________GACCG_GA__GGC_UGAUGGG\n______________:||||_||__:||_|||||:|\n______________UUGGC_CU__UCG_ACUACUC\n3'-UUU...AGUUU_____A__AA___G_______CUCUA...GUU-5'\n_____________|_____________________|\n_____________121___________________99\n |
244 -- 250 |
100 -- 106 |
-24.1459 kcal/mol |
8.55357 kcal/mol |
2.24919 kcal/mol |
229 251@LB@ | |@LB@5'-CGA...GACCU C AA G CAUCA...ACC-3'@LB@ GACCG GA GGC UGAUGGG@LB@ :|||| || :|| |||||:|@LB@ UUGGC CU UCG ACUACUC@LB@3'-UUU...AGUUU A AA G CUCUA...GUU-5'@LB@ | |@LB@ 121 99@LB@@LB@@LB@Energy -13.35 kcal/mol@LB@Hybridization Energy -24.1459 kcal/mol@LB@Unfolding Energy - mRNA 8.55357 kcal/mol@LB@Unfolding Energy - sRNA 2.24919 kcal/mol@LB@@LB@Position - mRNA 230 -- 250@LB@Position - sRNA 100 -- 120@LB@Position Seed - mRNA 244 -- 250@LB@Position Seed - sRNA 100 -- 106@LB@ |
| 116 |
0.00199 |
0.07883 |
pa4478 |
N/A |
-13.34 |
0.029660 |
177 -- 225 |
39 -- 82 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________176____________________________________________________226\n_____________|______________________________________________________|\n5'-CAA...AUCGC__________UUCCC___AGC______________UC____U_______CU___CCUCG...AGU-3'\n______________CCGAC_GCGU_____GGG___CUC_CA___UGCCG__GCUG_AUCUCGC__CCG\n______________|||||_||||_____|||___|||_||___|:|||__||||_|||||||__||:\n______________GGCUG_CGCA_____CCC___GAG_GU___AUGGC__CGAC_UAGAGCG__GGU\n3'-UUU...UCUCA_____A____________A_____A__CGA___________________CU___CAACU...GUU-5'\n_____________|______________________________________________________|\n_____________83_____________________________________________________38\n |
214 -- 220 |
44 -- 50 |
-46.9389 kcal/mol |
14.7161 kcal/mol |
18.8872 kcal/mol |
176 226@LB@ | |@LB@5'-CAA...AUCGC UUCCC AGC UC U CU CCUCG...AGU-3'@LB@ CCGAC GCGU GGG CUC CA UGCCG GCUG AUCUCGC CCG@LB@ ||||| |||| ||| ||| || |:||| |||| ||||||| ||:@LB@ GGCUG CGCA CCC GAG GU AUGGC CGAC UAGAGCG GGU@LB@3'-UUU...UCUCA A A A CGA CU CAACU...GUU-5'@LB@ | |@LB@ 83 38@LB@@LB@@LB@Energy -13.34 kcal/mol@LB@Hybridization Energy -46.9389 kcal/mol@LB@Unfolding Energy - mRNA 14.7161 kcal/mol@LB@Unfolding Energy - sRNA 18.8872 kcal/mol@LB@@LB@Position - mRNA 177 -- 225@LB@Position - sRNA 39 -- 82@LB@Position Seed - mRNA 214 -- 220@LB@Position Seed - sRNA 44 -- 50@LB@ |
| 44 |
0.0002709 |
0.02829 |
pa1340 |
N/A |
-13.31 |
0.030188 |
17 -- 34 |
101 -- 117 |
amino acid ABC transporter permease |
|
_____________16_________________35\n_____________|__________________|\n5'-AAC...GGCGU__C____C__________AGCUG...UCG-3'\n______________CG_UGAU_GGCCUGAUGG\n______________||_||||_:||||||||:\n______________GC_ACUA_UCGGACUACU\n3'-UUU...UUUUG_______A__________CCUCU...GUU-5'\n_____________|__________________|\n_____________118________________100\n |
28 -- 34 |
101 -- 107 |
-22.4618 kcal/mol |
6.92464 kcal/mol |
2.23144 kcal/mol |
16 35@LB@ | |@LB@5'-AAC...GGCGU C C AGCUG...UCG-3'@LB@ CG UGAU GGCCUGAUGG@LB@ || |||| :||||||||:@LB@ GC ACUA UCGGACUACU@LB@3'-UUU...UUUUG A CCUCU...GUU-5'@LB@ | |@LB@ 118 100@LB@@LB@@LB@Energy -13.31 kcal/mol@LB@Hybridization Energy -22.4618 kcal/mol@LB@Unfolding Energy - mRNA 6.92464 kcal/mol@LB@Unfolding Energy - sRNA 2.23144 kcal/mol@LB@@LB@Position - mRNA 17 -- 34@LB@Position - sRNA 101 -- 117@LB@Position Seed - mRNA 28 -- 34@LB@Position Seed - sRNA 101 -- 107@LB@ |
| 57 |
0.0004766 |
0.03843 |
pa1413 |
N/A |
-13.23 |
0.031643 |
209 -- 220 |
33 -- 44 |
transcriptional regulator |
pa0708 pa4203 |
_____________208__________221\n_____________|____________|\n5'-GGU...GAGUU____________GAUUU...CGA-3'\n______________CGGCCAGUUGAG\n______________||:|||||||||\n______________GCUGGUCAACUC\n3'-UUU...AGAGC____________ACUGU...GUU-5'\n_____________|____________|\n_____________45___________32\n |
214 -- 220 |
33 -- 39 |
-19.8607 kcal/mol |
4.38796 kcal/mol |
2.24787 kcal/mol |
208 221@LB@ | |@LB@5'-GGU...GAGUU GAUUU...CGA-3'@LB@ CGGCCAGUUGAG@LB@ ||:|||||||||@LB@ GCUGGUCAACUC@LB@3'-UUU...AGAGC ACUGU...GUU-5'@LB@ | |@LB@ 45 32@LB@@LB@@LB@Energy -13.23 kcal/mol@LB@Hybridization Energy -19.8607 kcal/mol@LB@Unfolding Energy - mRNA 4.38796 kcal/mol@LB@Unfolding Energy - sRNA 2.24787 kcal/mol@LB@@LB@Position - mRNA 209 -- 220@LB@Position - sRNA 33 -- 44@LB@Position Seed - mRNA 214 -- 220@LB@Position Seed - sRNA 33 -- 39@LB@ |
| 163 |
0.004151 |
0.1159 |
pa3263 |
N/A |
-13.17 |
0.032863 |
133 -- 150 |
104 -- 121 |
recombination associated protein RdgC |
|
_____________132________________151\n_____________|__________________|\n5'-GUA...GCGAC______G___________GCCGC...CCU-3'\n______________GGACCG_GGUUGGCCUGA\n______________::||||_|:||:||||||\n______________UUUGGC_CUAAUCGGACU\n3'-UUU...CAGUU______A___________ACUCC...GUU-5'\n_____________|__________________|\n_____________122________________103\n |
144 -- 150 |
104 -- 110 |
-25.1519 kcal/mol |
9.74439 kcal/mol |
2.24203 kcal/mol |
132 151@LB@ | |@LB@5'-GUA...GCGAC G GCCGC...CCU-3'@LB@ GGACCG GGUUGGCCUGA@LB@ ::|||| |:||:||||||@LB@ UUUGGC CUAAUCGGACU@LB@3'-UUU...CAGUU A ACUCC...GUU-5'@LB@ | |@LB@ 122 103@LB@@LB@@LB@Energy -13.17 kcal/mol@LB@Hybridization Energy -25.1519 kcal/mol@LB@Unfolding Energy - mRNA 9.74439 kcal/mol@LB@Unfolding Energy - sRNA 2.24203 kcal/mol@LB@@LB@Position - mRNA 133 -- 150@LB@Position - sRNA 104 -- 121@LB@Position Seed - mRNA 144 -- 150@LB@Position Seed - sRNA 104 -- 110@LB@ |
| 92 |
0.001266 |
0.06327 |
pa1307 |
N/A |
-13.15 |
0.033214 |
250 -- 278 |
41 -- 65 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________249___________________________279\n_____________|_____________________________|\n5'-UGC...CGUCU_______C_____A_____GCAG______GGCGG...GCG-3'\n______________UCAGCUU_ACCGG_CUGAU____CGCGGC\n______________|||||||_|||||_|||||____||||:|\n______________AGUCGAA_UGGCC_GACUA____GCGCUG\n3'-UUU...CAGAG___________________GA________GUCAA...GUU-5'\n_____________|_____________________________|\n_____________66____________________________40\n |
250 -- 256 |
59 -- 65 |
-34.6223 kcal/mol |
8.37343 kcal/mol |
13.1048 kcal/mol |
249 279@LB@ | |@LB@5'-UGC...CGUCU C A GCAG GGCGG...GCG-3'@LB@ UCAGCUU ACCGG CUGAU CGCGGC@LB@ ||||||| ||||| ||||| ||||:|@LB@ AGUCGAA UGGCC GACUA GCGCUG@LB@3'-UUU...CAGAG GA GUCAA...GUU-5'@LB@ | |@LB@ 66 40@LB@@LB@@LB@Energy -13.15 kcal/mol@LB@Hybridization Energy -34.6223 kcal/mol@LB@Unfolding Energy - mRNA 8.37343 kcal/mol@LB@Unfolding Energy - sRNA 13.1048 kcal/mol@LB@@LB@Position - mRNA 250 -- 278@LB@Position - sRNA 41 -- 65@LB@Position Seed - mRNA 250 -- 256@LB@Position Seed - sRNA 59 -- 65@LB@ |
| 88 |
0.001191 |
0.06151 |
pa1669 |
N/A |
-13.12 |
0.033789 |
66 -- 116 |
61 -- 119 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
pa0077 |
_____________65___________________________________________________________117\n_____________|____________________________________________________________|\n5'-AGG...UGUUC___C____CU_________U__U___U__GG____________C__C_____________GAACA...UCG-3'\n______________ACC_UGGU__GCCUGGUGG_GA_GUA_UC__________GAUU_GC_UGGG_UUCUCGGC\n______________|||_||:|__|||||:||:_||_:||_||__________||:|_||_||||_:||||:||\n______________UGG_ACUA__CGGACUACU_CU_UAU_AG__________CUGA_CG_ACCC_GAGAGUCG\n3'-UUU...GUUUU___C____AU_________C__C___U__ACUUCUCAGG_______C____A________AAUGG...GUU-5'\n_____________|____________________________________________________________|\n_____________120__________________________________________________________60\n |
78 -- 84 |
101 -- 107 |
-47.9471 kcal/mol |
19.2589 kcal/mol |
15.5734 kcal/mol |
65 117@LB@ | |@LB@5'-AGG...UGUUC C CU U U U GG C C GAACA...UCG-3'@LB@ ACC UGGU GCCUGGUGG GA GUA UC GAUU GC UGGG UUCUCGGC@LB@ ||| ||:| |||||:||: || :|| || ||:| || |||| :||||:||@LB@ UGG ACUA CGGACUACU CU UAU AG CUGA CG ACCC GAGAGUCG@LB@3'-UUU...GUUUU C AU C C U ACUUCUCAGG C A AAUGG...GUU-5'@LB@ | |@LB@ 120 60@LB@@LB@@LB@Energy -13.12 kcal/mol@LB@Hybridization Energy -47.9471 kcal/mol@LB@Unfolding Energy - mRNA 19.2589 kcal/mol@LB@Unfolding Energy - sRNA 15.5734 kcal/mol@LB@@LB@Position - mRNA 66 -- 116@LB@Position - sRNA 61 -- 119@LB@Position Seed - mRNA 78 -- 84@LB@Position Seed - sRNA 101 -- 107@LB@ |
| 89 |
0.001191 |
0.06151 |
pa1669 |
N/A |
-13.12 |
0.033789 |
66 -- 116 |
61 -- 119 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
pa0077 |
_____________65___________________________________________________________117\n_____________|____________________________________________________________|\n5'-AGG...UGUUC___C____CU_________U__U___U__GG____________C__C_____________GAACA...UCG-3'\n______________ACC_UGGU__GCCUGGUGG_GA_GUA_UC__________GAUU_GC_UGGG_UUCUCGGC\n______________|||_||:|__|||||:||:_||_:||_||__________||:|_||_||||_:||||:||\n______________UGG_ACUA__CGGACUACU_CU_UAU_AG__________CUGA_CG_ACCC_GAGAGUCG\n3'-UUU...GUUUU___C____AU_________C__C___U__ACUUCUCAGG_______C____A________AAUGG...GUU-5'\n_____________|____________________________________________________________|\n_____________120__________________________________________________________60\n |
78 -- 84 |
101 -- 107 |
-47.9471 kcal/mol |
19.2589 kcal/mol |
15.5734 kcal/mol |
65 117@LB@ | |@LB@5'-AGG...UGUUC C CU U U U GG C C GAACA...UCG-3'@LB@ ACC UGGU GCCUGGUGG GA GUA UC GAUU GC UGGG UUCUCGGC@LB@ ||| ||:| |||||:||: || :|| || ||:| || |||| :||||:||@LB@ UGG ACUA CGGACUACU CU UAU AG CUGA CG ACCC GAGAGUCG@LB@3'-UUU...GUUUU C AU C C U ACUUCUCAGG C A AAUGG...GUU-5'@LB@ | |@LB@ 120 60@LB@@LB@@LB@Energy -13.12 kcal/mol@LB@Hybridization Energy -47.9471 kcal/mol@LB@Unfolding Energy - mRNA 19.2589 kcal/mol@LB@Unfolding Energy - sRNA 15.5734 kcal/mol@LB@@LB@Position - mRNA 66 -- 116@LB@Position - sRNA 61 -- 119@LB@Position Seed - mRNA 78 -- 84@LB@Position Seed - sRNA 101 -- 107@LB@ |
