| 16 |
3.003e-05 |
0.008352 |
pa2689 |
N/A |
-17.00 |
0.002414 |
189 -- 205 |
100 -- 117 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________188________________206\n_____________|__________________|\n5'-CGG...CAUAA__A__A____________AACCU...UGG-3'\n______________CG_GA__AGCCUGAUGAG\n______________||_||__|||||||||||\n______________GC_CU__UCGGACUACUC\n3'-UUU...UUUUG__A__AA___________CUCUA...GUU-5'\n_____________|__________________|\n_____________118________________99\n |
199 -- 205 |
100 -- 106 |
-22.2469 kcal/mol |
3.0121 kcal/mol |
2.23711 kcal/mol |
188 206@LB@ | |@LB@5'-CGG...CAUAA A A AACCU...UGG-3'@LB@ CG GA AGCCUGAUGAG@LB@ || || |||||||||||@LB@ GC CU UCGGACUACUC@LB@3'-UUU...UUUUG A AA CUCUA...GUU-5'@LB@ | |@LB@ 118 99@LB@@LB@@LB@Energy -17.00 kcal/mol@LB@Hybridization Energy -22.2469 kcal/mol@LB@Unfolding Energy - mRNA 3.0121 kcal/mol@LB@Unfolding Energy - sRNA 2.23711 kcal/mol@LB@@LB@Position - mRNA 189 -- 205@LB@Position - sRNA 100 -- 117@LB@Position Seed - mRNA 199 -- 205@LB@Position Seed - sRNA 100 -- 106@LB@ |
| 87 |
0.001101 |
0.05816 |
pa1343 |
N/A |
-16.83 |
0.002748 |
192 -- 238 |
44 -- 87 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________191______________________________________________239\n_____________|________________________________________________|\n5'-UCG...CGCCU_______CCA____CUA_____AUCC_____C_______C_UG_____CGCAC...CCC-3'\n______________GGAGUCC___UGCG____UCUC____UCAGC_UGCUGGC_G__CUCGC\n______________:||||||___||||____||||____|||||_|:|:|||_|__|||||\n______________UCUCAGG___ACGC____AGAG____AGUCG_AUGGCCG_C__GAGCG\n3'-UUU...AGACU_______CUG____ACCC_____________A_______A_UA_____CUGGU...GUU-5'\n_____________|________________________________________________|\n_____________88_______________________________________________43\n |
192 -- 198 |
81 -- 87 |
-49.5275 kcal/mol |
13.8321 kcal/mol |
18.8647 kcal/mol |
191 239@LB@ | |@LB@5'-UCG...CGCCU CCA CUA AUCC C C UG CGCAC...CCC-3'@LB@ GGAGUCC UGCG UCUC UCAGC UGCUGGC G CUCGC@LB@ :|||||| |||| |||| ||||| |:|:||| | |||||@LB@ UCUCAGG ACGC AGAG AGUCG AUGGCCG C GAGCG@LB@3'-UUU...AGACU CUG ACCC A A UA CUGGU...GUU-5'@LB@ | |@LB@ 88 43@LB@@LB@@LB@Energy -16.83 kcal/mol@LB@Hybridization Energy -49.5275 kcal/mol@LB@Unfolding Energy - mRNA 13.8321 kcal/mol@LB@Unfolding Energy - sRNA 18.8647 kcal/mol@LB@@LB@Position - mRNA 192 -- 238@LB@Position - sRNA 44 -- 87@LB@Position Seed - mRNA 192 -- 198@LB@Position Seed - sRNA 81 -- 87@LB@ |
| 10 |
1.1e-05 |
0.004211 |
pa5300 |
cycB |
-16.80 |
0.002828 |
155 -- 174 |
99 -- 117 |
cytochrome C5 |
|
_____________154__________________175\n_____________|____________________|\n5'-GGG...CCGGG______A____AC_______GUGUA...GCA-3'\n______________UGUGAU_AGCC__GAUGAGG\n______________:|||||_||||__|||||||\n______________GCACUA_UCGG__CUACUCC\n3'-UUU...UUUUG______A____A________UCUAU...GUU-5'\n_____________|____________________|\n_____________118__________________98\n |
168 -- 174 |
99 -- 105 |
-24.2788 kcal/mol |
5.2486 kcal/mol |
2.23779 kcal/mol |
154 175@LB@ | |@LB@5'-GGG...CCGGG A AC GUGUA...GCA-3'@LB@ UGUGAU AGCC GAUGAGG@LB@ :||||| |||| |||||||@LB@ GCACUA UCGG CUACUCC@LB@3'-UUU...UUUUG A A UCUAU...GUU-5'@LB@ | |@LB@ 118 98@LB@@LB@@LB@Energy -16.80 kcal/mol@LB@Hybridization Energy -24.2788 kcal/mol@LB@Unfolding Energy - mRNA 5.2486 kcal/mol@LB@Unfolding Energy - sRNA 2.23779 kcal/mol@LB@@LB@Position - mRNA 155 -- 174@LB@Position - sRNA 99 -- 117@LB@Position Seed - mRNA 168 -- 174@LB@Position Seed - sRNA 99 -- 105@LB@ |
| 197 |
0.005405 |
0.1261 |
pa2580 |
N/A |
-16.79 |
0.002834 |
13 -- 30 |
70 -- 88 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________12__________________31\n_____________|___________________|\n5'-GUG...UCAUC___________________GGCGC...ACC-3'\n______________GAGGG_CUGGCUGCGUGGG\n______________:||:|_|:|:|||||||||\n______________UUCUC_GGCUGACGCACCC\n3'-UUU...UAGAC_____A_____________AGAGA...GUU-5'\n_____________|___________________|\n_____________89__________________69\n |
24 -- 30 |
70 -- 76 |
-30.7983 kcal/mol |
8.14478 kcal/mol |
5.86376 kcal/mol |
12 31@LB@ | |@LB@5'-GUG...UCAUC GGCGC...ACC-3'@LB@ GAGGG CUGGCUGCGUGGG@LB@ :||:| |:|:|||||||||@LB@ UUCUC GGCUGACGCACCC@LB@3'-UUU...UAGAC A AGAGA...GUU-5'@LB@ | |@LB@ 89 69@LB@@LB@@LB@Energy -16.79 kcal/mol@LB@Hybridization Energy -30.7983 kcal/mol@LB@Unfolding Energy - mRNA 8.14478 kcal/mol@LB@Unfolding Energy - sRNA 5.86376 kcal/mol@LB@@LB@Position - mRNA 13 -- 30@LB@Position - sRNA 70 -- 88@LB@Position Seed - mRNA 24 -- 30@LB@Position Seed - sRNA 70 -- 76@LB@ |
| 70 |
0.0007568 |
0.0493 |
pa3767 |
N/A |
-16.77 |
0.002880 |
160 -- 178 |
98 -- 122 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________159_______________________179\n_____________|_________________________|\n5'-CAU...AUAUG_________________________CCAUC...GCG-3'\n______________GAGACCG______GCCUGAUGGGGA\n______________:|:||||______||||||||:|||\n______________UUUUGGC______CGGACUACUCCU\n3'-UUU...CCAGU_______ACUAAU____________CUAUU...GUU-5'\n_____________|_________________________|\n_____________123_______________________97\n |
172 -- 178 |
98 -- 104 |
-28.0357 kcal/mol |
9.01481 kcal/mol |
2.25226 kcal/mol |
159 179@LB@ | |@LB@5'-CAU...AUAUG CCAUC...GCG-3'@LB@ GAGACCG GCCUGAUGGGGA@LB@ :|:|||| ||||||||:|||@LB@ UUUUGGC CGGACUACUCCU@LB@3'-UUU...CCAGU ACUAAU CUAUU...GUU-5'@LB@ | |@LB@ 123 97@LB@@LB@@LB@Energy -16.77 kcal/mol@LB@Hybridization Energy -28.0357 kcal/mol@LB@Unfolding Energy - mRNA 9.01481 kcal/mol@LB@Unfolding Energy - sRNA 2.25226 kcal/mol@LB@@LB@Position - mRNA 160 -- 178@LB@Position - sRNA 98 -- 122@LB@Position Seed - mRNA 172 -- 178@LB@Position Seed - sRNA 98 -- 104@LB@ |
| 73 |
0.0008061 |
0.04991 |
pa0112 |
N/A |
-16.64 |
0.003170 |
93 -- 149 |
38 -- 90 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________92__________________________________________________________150\n_____________|___________________________________________________________|\n5'-CGG...GCUGC______AC__G_A________CUCAAG________A____________GG_________CGCGG...CCC-3'\n______________UGAAGG__GU_C_ACUGC_UG______CUCUC_GC_UAUCGGUUGAUC__CGUGGCCGG\n______________|||||:__||_|_|||||_||______|||||_||_||:|||:|||||__||:|:||:|\n______________ACUUCU__CA_G_UGACG_AC______GAGAG_CG_AUGGCCGACUAG__GCGCUGGUC\n3'-UUU...AUUAG__________G_C_____C__CCA________U__A____________A__________AACUC...GUU-5'\n_____________|___________________________________________________________|\n_____________91__________________________________________________________37\n |
141 -- 147 |
40 -- 46 |
-57.3106 kcal/mol |
21.635 kcal/mol |
19.0336 kcal/mol |
92 150@LB@ | |@LB@5'-CGG...GCUGC AC G A CUCAAG A GG CGCGG...CCC-3'@LB@ UGAAGG GU C ACUGC UG CUCUC GC UAUCGGUUGAUC CGUGGCCGG@LB@ |||||: || | ||||| || ||||| || ||:|||:||||| ||:|:||:|@LB@ ACUUCU CA G UGACG AC GAGAG CG AUGGCCGACUAG GCGCUGGUC@LB@3'-UUU...AUUAG G C C CCA U A A AACUC...GUU-5'@LB@ | |@LB@ 91 37@LB@@LB@@LB@Energy -16.64 kcal/mol@LB@Hybridization Energy -57.3106 kcal/mol@LB@Unfolding Energy - mRNA 21.635 kcal/mol@LB@Unfolding Energy - sRNA 19.0336 kcal/mol@LB@@LB@Position - mRNA 93 -- 149@LB@Position - sRNA 38 -- 90@LB@Position Seed - mRNA 141 -- 147@LB@Position Seed - sRNA 40 -- 46@LB@ |
| 55 |
0.0004353 |
0.03637 |
pa0086 |
N/A |
-16.64 |
0.003171 |
21 -- 37 |
100 -- 117 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________20_________________38\n_____________|__________________|\n5'-GGC...CAGAA____CA____________CCGGC...ACG-3'\n______________CGUG___GGCCUGAUGAG\n______________||||___:||||||||||\n______________GCAC___UCGGACUACUC\n3'-UUU...UUUUG____UAA___________CUCUA...GUU-5'\n_____________|__________________|\n_____________118________________99\n |
31 -- 37 |
100 -- 106 |
-24.5052 kcal/mol |
5.62761 kcal/mol |
2.23711 kcal/mol |
20 38@LB@ | |@LB@5'-GGC...CAGAA CA CCGGC...ACG-3'@LB@ CGUG GGCCUGAUGAG@LB@ |||| :||||||||||@LB@ GCAC UCGGACUACUC@LB@3'-UUU...UUUUG UAA CUCUA...GUU-5'@LB@ | |@LB@ 118 99@LB@@LB@@LB@Energy -16.64 kcal/mol@LB@Hybridization Energy -24.5052 kcal/mol@LB@Unfolding Energy - mRNA 5.62761 kcal/mol@LB@Unfolding Energy - sRNA 2.23711 kcal/mol@LB@@LB@Position - mRNA 21 -- 37@LB@Position - sRNA 100 -- 117@LB@Position Seed - mRNA 31 -- 37@LB@Position Seed - sRNA 100 -- 106@LB@ |
| 22 |
5.562e-05 |
0.01105 |
pa2264 |
N/A |
-16.58 |
0.003334 |
170 -- 193 |
98 -- 122 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________169_______________________194\n_____________|_________________________|\n5'-CCU...AAGAC___________GAU__A________CCCCA...AUG-3'\n______________GAAACCGUGAU___CC_GA_GAGGA\n______________:||||||||||___||_||_|||||\n______________UUUUGGCACUA___GG_CU_CUCCU\n3'-UUU...CCAGU___________AUC__A__A_____CUAUU...GUU-5'\n_____________|_________________________|\n_____________123_______________________97\n |
174 -- 180 |
112 -- 118 |
-25.8581 kcal/mol |
7.03089 kcal/mol |
2.25226 kcal/mol |
169 194@LB@ | |@LB@5'-CCU...AAGAC GAU A CCCCA...AUG-3'@LB@ GAAACCGUGAU CC GA GAGGA@LB@ :|||||||||| || || |||||@LB@ UUUUGGCACUA GG CU CUCCU@LB@3'-UUU...CCAGU AUC A A CUAUU...GUU-5'@LB@ | |@LB@ 123 97@LB@@LB@@LB@Energy -16.58 kcal/mol@LB@Hybridization Energy -25.8581 kcal/mol@LB@Unfolding Energy - mRNA 7.03089 kcal/mol@LB@Unfolding Energy - sRNA 2.25226 kcal/mol@LB@@LB@Position - mRNA 170 -- 193@LB@Position - sRNA 98 -- 122@LB@Position Seed - mRNA 174 -- 180@LB@Position Seed - sRNA 112 -- 118@LB@ |
| 56 |
0.0004529 |
0.03717 |
pa2678 |
N/A |
-16.50 |
0.003530 |
187 -- 235 |
44 -- 90 |
ABC transporter permease |
|
_____________186_________________________________________________236\n_____________|___________________________________________________|\n5'-GGU...CGCCG__________UU_____A_U___UCC________________CA_______CAGUC...CCA-3'\n______________UGGAGAGUUU__CUGUG_G_GGU___CUCUUGGU__ACCGGC__GUCUCGC\n______________||:|||||::__|||:|_|_|||___||||::|:__||||||__:||||||\n______________ACUUCUCAGG__GACGC_C_CCA___GAGAGUCG__UGGCCG__UAGAGCG\n3'-UUU...AUUAG__________CU_____A________________AA______AC_______CUGGU...GUU-5'\n_____________|___________________________________________________|\n_____________91__________________________________________________43\n |
229 -- 235 |
44 -- 50 |
-54.3997 kcal/mol |
18.981 kcal/mol |
18.9194 kcal/mol |
186 236@LB@ | |@LB@5'-GGU...CGCCG UU A U UCC CA CAGUC...CCA-3'@LB@ UGGAGAGUUU CUGUG G GGU CUCUUGGU ACCGGC GUCUCGC@LB@ ||:|||||:: |||:| | ||| ||||::|: |||||| :||||||@LB@ ACUUCUCAGG GACGC C CCA GAGAGUCG UGGCCG UAGAGCG@LB@3'-UUU...AUUAG CU A AA AC CUGGU...GUU-5'@LB@ | |@LB@ 91 43@LB@@LB@@LB@Energy -16.50 kcal/mol@LB@Hybridization Energy -54.3997 kcal/mol@LB@Unfolding Energy - mRNA 18.981 kcal/mol@LB@Unfolding Energy - sRNA 18.9194 kcal/mol@LB@@LB@Position - mRNA 187 -- 235@LB@Position - sRNA 44 -- 90@LB@Position Seed - mRNA 229 -- 235@LB@Position Seed - sRNA 44 -- 50@LB@ |
| 66 |
0.0006609 |
0.04603 |
pa1980 |
eraR |
-16.49 |
0.003558 |
189 -- 219 |
71 -- 102 |
response regulator EraR |
|
_____________188_______________________________220\n_____________|_________________________________|\n5'-GUG...ACUGA_______GGACGA__________U_________ACGAU...GCG-3'\n______________GAGGAGA______UGAAG_GUCC_GCUG_GUGG\n______________|||||||______|||||_||||_:|||_||||\n______________CUCCUCU______ACUUC_CAGG_UGAC_CACC\n3'-UUU...GACUA_______AUUAG______U____C____G____CAGAG...GUU-5'\n_____________|_________________________________|\n_____________103_______________________________70\n |
189 -- 195 |
96 -- 102 |
-37.796 kcal/mol |
12.0241 kcal/mol |
9.28371 kcal/mol |
188 220@LB@ | |@LB@5'-GUG...ACUGA GGACGA U ACGAU...GCG-3'@LB@ GAGGAGA UGAAG GUCC GCUG GUGG@LB@ ||||||| ||||| |||| :||| ||||@LB@ CUCCUCU ACUUC CAGG UGAC CACC@LB@3'-UUU...GACUA AUUAG U C G CAGAG...GUU-5'@LB@ | |@LB@ 103 70@LB@@LB@@LB@Energy -16.49 kcal/mol@LB@Hybridization Energy -37.796 kcal/mol@LB@Unfolding Energy - mRNA 12.0241 kcal/mol@LB@Unfolding Energy - sRNA 9.28371 kcal/mol@LB@@LB@Position - mRNA 189 -- 219@LB@Position - sRNA 71 -- 102@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 96 -- 102@LB@ |
