| 75 |
0.0008154 |
0.04991 |
pa4367 |
bifA |
-16.44 |
0.003694 |
124 -- 142 |
99 -- 118 |
protein BifA |
|
_____________123__________________143\n_____________|____________________|\n5'-CGA...UUCGC_____________CU_____UAAAC...UCG-3'\n______________UCGUGAU_AGCCU__UGAGG\n______________:||||||_|||||__|||||\n______________GGCACUA_UCGGA__ACUCC\n3'-UUU...UUUUU_______A_____CU_____UCUAU...GUU-5'\n_____________|____________________|\n_____________119__________________98\n |
124 -- 130 |
112 -- 118 |
-25.0523 kcal/mol |
6.36496 kcal/mol |
2.24947 kcal/mol |
123 143@LB@ | |@LB@5'-CGA...UUCGC CU UAAAC...UCG-3'@LB@ UCGUGAU AGCCU UGAGG@LB@ :|||||| ||||| |||||@LB@ GGCACUA UCGGA ACUCC@LB@3'-UUU...UUUUU A CU UCUAU...GUU-5'@LB@ | |@LB@ 119 98@LB@@LB@@LB@Energy -16.44 kcal/mol@LB@Hybridization Energy -25.0523 kcal/mol@LB@Unfolding Energy - mRNA 6.36496 kcal/mol@LB@Unfolding Energy - sRNA 2.24947 kcal/mol@LB@@LB@Position - mRNA 124 -- 142@LB@Position - sRNA 99 -- 118@LB@Position Seed - mRNA 124 -- 130@LB@Position Seed - sRNA 112 -- 118@LB@ |
| 187 |
0.004933 |
0.1213 |
pa0613 |
N/A |
-16.40 |
0.003821 |
197 -- 220 |
101 -- 120 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________196______________________221\n_____________|________________________|\n5'-GAC...GACAC_________CAA____AUC_____AAUGC...CCA-3'\n______________GACCGUGAU___AGCC___GAUGA\n______________:||||||||___||||___|||||\n______________UUGGCACUA___UCGG___CUACU\n3'-UUU...AGUUU_________A______A_______CCUCU...GUU-5'\n_____________|________________________|\n_____________121______________________100\n |
199 -- 205 |
112 -- 118 |
-24.1405 kcal/mol |
5.50451 kcal/mol |
2.2437 kcal/mol |
196 221@LB@ | |@LB@5'-GAC...GACAC CAA AUC AAUGC...CCA-3'@LB@ GACCGUGAU AGCC GAUGA@LB@ :|||||||| |||| |||||@LB@ UUGGCACUA UCGG CUACU@LB@3'-UUU...AGUUU A A CCUCU...GUU-5'@LB@ | |@LB@ 121 100@LB@@LB@@LB@Energy -16.40 kcal/mol@LB@Hybridization Energy -24.1405 kcal/mol@LB@Unfolding Energy - mRNA 5.50451 kcal/mol@LB@Unfolding Energy - sRNA 2.2437 kcal/mol@LB@@LB@Position - mRNA 197 -- 220@LB@Position - sRNA 101 -- 120@LB@Position Seed - mRNA 199 -- 205@LB@Position Seed - sRNA 112 -- 118@LB@ |
| 180 |
0.004705 |
0.1199 |
pa3616 |
N/A |
-16.34 |
0.003989 |
120 -- 132 |
35 -- 47 |
recombination regulator RecX |
|
_____________119___________133\n_____________|_____________|\n5'-GUC...ACCAU_____________CUGGC...UGC-3'\n______________UCGCGACCAGUUG\n______________|||||||||||||\n______________AGCGCUGGUCAAC\n3'-UUU...ACUAG_____________UCACU...GUU-5'\n_____________|_____________|\n_____________48____________34\n |
126 -- 132 |
35 -- 41 |
-23.7921 kcal/mol |
3.77419 kcal/mol |
3.68501 kcal/mol |
119 133@LB@ | |@LB@5'-GUC...ACCAU CUGGC...UGC-3'@LB@ UCGCGACCAGUUG@LB@ |||||||||||||@LB@ AGCGCUGGUCAAC@LB@3'-UUU...ACUAG UCACU...GUU-5'@LB@ | |@LB@ 48 34@LB@@LB@@LB@Energy -16.34 kcal/mol@LB@Hybridization Energy -23.7921 kcal/mol@LB@Unfolding Energy - mRNA 3.77419 kcal/mol@LB@Unfolding Energy - sRNA 3.68501 kcal/mol@LB@@LB@Position - mRNA 120 -- 132@LB@Position - sRNA 35 -- 47@LB@Position Seed - mRNA 126 -- 132@LB@Position Seed - sRNA 35 -- 41@LB@ |
| 169 |
0.004373 |
0.117 |
pa4102 |
bfmS |
-16.20 |
0.004411 |
15 -- 27 |
35 -- 47 |
protein BfmS |
|
_____________14____________28\n_____________|_____________|\n5'-CAA...CUCAG_____________CUCAA...CGC-3'\n______________UCGCGACCAGUUG\n______________|||||||||||||\n______________AGCGCUGGUCAAC\n3'-UUU...ACUAG_____________UCACU...GUU-5'\n_____________|_____________|\n_____________48____________34\n |
21 -- 27 |
35 -- 41 |
-23.806 kcal/mol |
3.92504 kcal/mol |
3.68501 kcal/mol |
14 28@LB@ | |@LB@5'-CAA...CUCAG CUCAA...CGC-3'@LB@ UCGCGACCAGUUG@LB@ |||||||||||||@LB@ AGCGCUGGUCAAC@LB@3'-UUU...ACUAG UCACU...GUU-5'@LB@ | |@LB@ 48 34@LB@@LB@@LB@Energy -16.20 kcal/mol@LB@Hybridization Energy -23.806 kcal/mol@LB@Unfolding Energy - mRNA 3.92504 kcal/mol@LB@Unfolding Energy - sRNA 3.68501 kcal/mol@LB@@LB@Position - mRNA 15 -- 27@LB@Position - sRNA 35 -- 47@LB@Position Seed - mRNA 21 -- 27@LB@Position Seed - sRNA 35 -- 41@LB@ |
| 149 |
0.003414 |
0.1053 |
pa3109 |
N/A |
-16.06 |
0.004890 |
59 -- 72 |
33 -- 46 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________58_____________73\n_____________|______________|\n5'-CGG...GCCUG______________CAAGC...UGC-3'\n______________CGCGACCAGUUGAG\n______________||||||||||||||\n______________GCGCUGGUCAACUC\n3'-UUU...CUAGA______________ACUGU...GUU-5'\n_____________|______________|\n_____________47_____________32\n |
66 -- 72 |
33 -- 39 |
-27.0742 kcal/mol |
7.33982 kcal/mol |
3.68029 kcal/mol |
58 73@LB@ | |@LB@5'-CGG...GCCUG CAAGC...UGC-3'@LB@ CGCGACCAGUUGAG@LB@ ||||||||||||||@LB@ GCGCUGGUCAACUC@LB@3'-UUU...CUAGA ACUGU...GUU-5'@LB@ | |@LB@ 47 32@LB@@LB@@LB@Energy -16.06 kcal/mol@LB@Hybridization Energy -27.0742 kcal/mol@LB@Unfolding Energy - mRNA 7.33982 kcal/mol@LB@Unfolding Energy - sRNA 3.68029 kcal/mol@LB@@LB@Position - mRNA 59 -- 72@LB@Position - sRNA 33 -- 46@LB@Position Seed - mRNA 66 -- 72@LB@Position Seed - sRNA 33 -- 39@LB@ |
| 154 |
0.003595 |
0.1073 |
pa3974 |
ladS |
-15.87 |
0.005612 |
181 -- 233 |
43 -- 89 |
lost adherence sensor LadS |
|
_____________180_________________________________________________________234\n_____________|___________________________________________________________|\n5'-CUU...CGUUC____________________CA__AUG_______________UUCUCUUUCU_______UUGCC...CCA-3'\n______________GAGGAG_C__ACUGCG_GGG__UC___CGGC__ACUGGCUGA__________UCUUGCG\n______________||:|||_|__||||||_|||__||___|:||__||:||||||__________|||:|||\n______________CUUCUC_G__UGACGC_CCC__AG___GUCG__UGGCCGACU__________AGAGCGC\n3'-UUU...UUAGA______A_GC______A___AG__A______AA__________________________UGGUC...GUU-5'\n_____________|___________________________________________________________|\n_____________90__________________________________________________________42\n |
227 -- 233 |
43 -- 49 |
-49.9041 kcal/mol |
15.1092 kcal/mol |
18.9299 kcal/mol |
180 234@LB@ | |@LB@5'-CUU...CGUUC CA AUG UUCUCUUUCU UUGCC...CCA-3'@LB@ GAGGAG C ACUGCG GGG UC CGGC ACUGGCUGA UCUUGCG@LB@ ||:||| | |||||| ||| || |:|| ||:|||||| |||:|||@LB@ CUUCUC G UGACGC CCC AG GUCG UGGCCGACU AGAGCGC@LB@3'-UUU...UUAGA A GC A AG A AA UGGUC...GUU-5'@LB@ | |@LB@ 90 42@LB@@LB@@LB@Energy -15.87 kcal/mol@LB@Hybridization Energy -49.9041 kcal/mol@LB@Unfolding Energy - mRNA 15.1092 kcal/mol@LB@Unfolding Energy - sRNA 18.9299 kcal/mol@LB@@LB@Position - mRNA 181 -- 233@LB@Position - sRNA 43 -- 89@LB@Position Seed - mRNA 227 -- 233@LB@Position Seed - sRNA 43 -- 49@LB@ |
| 107 |
0.001753 |
0.07531 |
pa3707 |
N/A |
-15.86 |
0.005654 |
190 -- 241 |
38 -- 85 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________189____________________________________________________242\n_____________|______________________________________________________|\n5'-GCC...UUCAA_____GA_______ACC__G____C___CC___________A___A__C_____CAAGC...AAG-3'\n______________AGUCU__GGCUGUG___GU_UC_C_GCU__ACCGGC_GAUC_UCG_CG_ACCAG\n______________||||:__|:|||:|___||_||_|_|||__||||||_||||_|||_||_|||||\n______________UCAGG__CUGACGC___CA_AG_G_CGA__UGGCCG_CUAG_AGC_GC_UGGUC\n3'-UUU...ACUUC______________ACC__G__A_U___A_______A_________________AACUC...GUU-5'\n_____________|______________________________________________________|\n_____________86_____________________________________________________37\n |
197 -- 203 |
74 -- 80 |
-51.3304 kcal/mol |
16.52 kcal/mol |
18.9581 kcal/mol |
189 242@LB@ | |@LB@5'-GCC...UUCAA GA ACC G C CC A A C CAAGC...AAG-3'@LB@ AGUCU GGCUGUG GU UC C GCU ACCGGC GAUC UCG CG ACCAG@LB@ ||||: |:|||:| || || | ||| |||||| |||| ||| || |||||@LB@ UCAGG CUGACGC CA AG G CGA UGGCCG CUAG AGC GC UGGUC@LB@3'-UUU...ACUUC ACC G A U A A AACUC...GUU-5'@LB@ | |@LB@ 86 37@LB@@LB@@LB@Energy -15.86 kcal/mol@LB@Hybridization Energy -51.3304 kcal/mol@LB@Unfolding Energy - mRNA 16.52 kcal/mol@LB@Unfolding Energy - sRNA 18.9581 kcal/mol@LB@@LB@Position - mRNA 190 -- 241@LB@Position - sRNA 38 -- 85@LB@Position Seed - mRNA 197 -- 203@LB@Position Seed - sRNA 74 -- 80@LB@ |
| 132 |
0.002652 |
0.0912 |
pa0364 |
N/A |
-15.84 |
0.005742 |
174 -- 193 |
100 -- 122 |
oxidoreductase |
|
_____________173_____________________194\n_____________|_______________________|\n5'-AUU...AGCCC_______CC______________UGCAU...UGG-3'\n______________GAAGCCG____UAGCCUGA_GAG\n______________:||:|||____||||||||_|||\n______________UUUUGGC____AUCGGACU_CUC\n3'-UUU...CCAGU_______ACUA________A___CUCUA...GUU-5'\n_____________|_______________________|\n_____________123_____________________99\n |
184 -- 190 |
104 -- 110 |
-22.8122 kcal/mol |
4.73034 kcal/mol |
2.24976 kcal/mol |
173 194@LB@ | |@LB@5'-AUU...AGCCC CC UGCAU...UGG-3'@LB@ GAAGCCG UAGCCUGA GAG@LB@ :||:||| |||||||| |||@LB@ UUUUGGC AUCGGACU CUC@LB@3'-UUU...CCAGU ACUA A CUCUA...GUU-5'@LB@ | |@LB@ 123 99@LB@@LB@@LB@Energy -15.84 kcal/mol@LB@Hybridization Energy -22.8122 kcal/mol@LB@Unfolding Energy - mRNA 4.73034 kcal/mol@LB@Unfolding Energy - sRNA 2.24976 kcal/mol@LB@@LB@Position - mRNA 174 -- 193@LB@Position - sRNA 100 -- 122@LB@Position Seed - mRNA 184 -- 190@LB@Position Seed - sRNA 104 -- 110@LB@ |
| 64 |
0.000634 |
0.04553 |
pa1832 |
N/A |
-15.82 |
0.005823 |
184 -- 249 |
39 -- 110 |
protease |
|
_____________183________________________________________________________________________250\n_____________|__________________________________________________________________________|\n5'-GUA...UCAAC___A____________UG____U_____________CGAAUAUGCG______U_____CAG_____________UGCUG...GCC-3'\n______________AGU__GA_GAGGGGGU____UG_GGAGUUC_AUUGC___________GGCUU_CUGGC___GA_C_CGUGACCG\n______________||:__||_||||:|:|____||_:||||:|_|:|||___________:||||_|:|||___||_|_||:||||:\n______________UCG__CU_CUCCUCUA____AC_UCUCAGG_UGACG___________UCGAA_GGCCG___CU_G_GCGCUGGU\n3'-UUU...ACUAA___GA__A________UUAG__U_______C_____CACCCAGAGAG_____U_____A____A_A________CAACU...GUU-5'\n_____________|__________________________________________________________________________|\n_____________111________________________________________________________________________38\n |
243 -- 249 |
39 -- 45 |
-57.1706 kcal/mol |
17.9919 kcal/mol |
23.3669 kcal/mol |
183 250@LB@ | |@LB@5'-GUA...UCAAC A UG U CGAAUAUGCG U CAG UGCUG...GCC-3'@LB@ AGU GA GAGGGGGU UG GGAGUUC AUUGC GGCUU CUGGC GA C CGUGACCG@LB@ ||: || ||||:|:| || :||||:| |:||| :|||| |:||| || | ||:||||:@LB@ UCG CU CUCCUCUA AC UCUCAGG UGACG UCGAA GGCCG CU G GCGCUGGU@LB@3'-UUU...ACUAA GA A UUAG U C CACCCAGAGAG U A A A CAACU...GUU-5'@LB@ | |@LB@ 111 38@LB@@LB@@LB@Energy -15.82 kcal/mol@LB@Hybridization Energy -57.1706 kcal/mol@LB@Unfolding Energy - mRNA 17.9919 kcal/mol@LB@Unfolding Energy - sRNA 23.3669 kcal/mol@LB@@LB@Position - mRNA 184 -- 249@LB@Position - sRNA 39 -- 110@LB@Position Seed - mRNA 243 -- 249@LB@Position Seed - sRNA 39 -- 45@LB@ |
| 63 |
0.0005567 |
0.04061 |
pa4538 |
ndh |
-15.78 |
0.005953 |
57 -- 71 |
102 -- 118 |
NADH dehydrogenase |
|
_____________56________________72\n_____________|_________________|\n5'-AGG...UCCGC_________________UUCGU...UCA-3'\n______________CCGUGGUU__CCUGAUG\n______________|||||:||__|||||||\n______________GGCACUAA__GGACUAC\n3'-UUU...UUUUU________UC_______UCCUC...GUU-5'\n_____________|_________________|\n_____________119_______________101\n |
65 -- 71 |
102 -- 108 |
-20.7877 kcal/mol |
2.76363 kcal/mol |
2.2426 kcal/mol |
56 72@LB@ | |@LB@5'-AGG...UCCGC UUCGU...UCA-3'@LB@ CCGUGGUU CCUGAUG@LB@ |||||:|| |||||||@LB@ GGCACUAA GGACUAC@LB@3'-UUU...UUUUU UC UCCUC...GUU-5'@LB@ | |@LB@ 119 101@LB@@LB@@LB@Energy -15.78 kcal/mol@LB@Hybridization Energy -20.7877 kcal/mol@LB@Unfolding Energy - mRNA 2.76363 kcal/mol@LB@Unfolding Energy - sRNA 2.2426 kcal/mol@LB@@LB@Position - mRNA 57 -- 71@LB@Position - sRNA 102 -- 118@LB@Position Seed - mRNA 65 -- 71@LB@Position Seed - sRNA 102 -- 108@LB@ |
