| 97 |
0.001341 |
0.06355 |
pa3929 |
cioB |
-12.35 |
0.052798 |
141 -- 190 |
33 -- 89 |
cyanide insensitive terminal oxidase |
|
_____________140____________________________________________________________191\n_____________|______________________________________________________________|\n5'-UCG...UCGAC______CA____G______________C__GCA_G____C______________GACAA___GAACU...UCU-3'\n______________GAAGAG__CGAC_GC__________CA_GC___A_CGGC_GA_C_CGCGACCAG_____GAG\n______________||||||__||||_||__________||_||___|_||||_||_|_|||||||||_____|||\n______________CUUCUC__GCUG_CG__________GU_CG___U_GCCG_CU_G_GCGCUGGUC_____CUC\n3'-UUU...UUAGA______AG____A__CACCCAGAGA_____AA__G____A__A_A_________AA______ACUGU...GUU-5'\n_____________|______________________________________________________________|\n_____________90_____________________________________________________________32\n |
176 -- 182 |
38 -- 44 |
-47.0211 kcal/mol |
15.6367 kcal/mol |
19.0341 kcal/mol |
140 191@LB@ | |@LB@5'-UCG...UCGAC CA G C GCA G C GACAA GAACU...UCU-3'@LB@ GAAGAG CGAC GC CA GC A CGGC GA C CGCGACCAG GAG@LB@ |||||| |||| || || || | |||| || | ||||||||| |||@LB@ CUUCUC GCUG CG GU CG U GCCG CU G GCGCUGGUC CUC@LB@3'-UUU...UUAGA AG A CACCCAGAGA AA G A A A AA ACUGU...GUU-5'@LB@ | |@LB@ 90 32@LB@@LB@@LB@Energy -12.35 kcal/mol@LB@Hybridization Energy -47.0211 kcal/mol@LB@Unfolding Energy - mRNA 15.6367 kcal/mol@LB@Unfolding Energy - sRNA 19.0341 kcal/mol@LB@@LB@Position - mRNA 141 -- 190@LB@Position - sRNA 33 -- 89@LB@Position Seed - mRNA 176 -- 182@LB@Position Seed - sRNA 38 -- 44@LB@ |
| 6 |
4.972e-06 |
0.003808 |
pa1336 |
N/A |
-12.31 |
0.054230 |
242 -- 253 |
107 -- 120 |
two-component sensor |
|
_____________241____________254\n_____________|______________|\n5'-GUC...UCACU______________CCGCC...UGA-3'\n______________GACCGUGA__AGCC\n______________:|||||||__||||\n______________UUGGCACU__UCGG\n3'-UUU...AGUUU________AA____ACUAC...GUU-5'\n_____________|______________|\n_____________121____________106\n |
243 -- 249 |
113 -- 119 |
-17.7907 kcal/mol |
3.25304 kcal/mol |
2.2351 kcal/mol |
241 254@LB@ | |@LB@5'-GUC...UCACU CCGCC...UGA-3'@LB@ GACCGUGA AGCC@LB@ :||||||| ||||@LB@ UUGGCACU UCGG@LB@3'-UUU...AGUUU AA ACUAC...GUU-5'@LB@ | |@LB@ 121 106@LB@@LB@@LB@Energy -12.31 kcal/mol@LB@Hybridization Energy -17.7907 kcal/mol@LB@Unfolding Energy - mRNA 3.25304 kcal/mol@LB@Unfolding Energy - sRNA 2.2351 kcal/mol@LB@@LB@Position - mRNA 242 -- 253@LB@Position - sRNA 107 -- 120@LB@Position Seed - mRNA 243 -- 249@LB@Position Seed - sRNA 113 -- 119@LB@ |
| 103 |
0.001681 |
0.07499 |
pa3587 |
metR |
-12.26 |
0.055812 |
244 -- 261 |
101 -- 121 |
transcriptional regulator MetR |
|
_____________243___________________262\n_____________|_____________________|\n5'-CAG...GCGCG______AC_____________AAGCC...UGU-3'\n______________AAGCCG_____AGCCUGGUGG\n______________||:|||_____||||||:||:\n______________UUUGGC_____UCGGACUACU\n3'-UUU...CAGUU______ACUAA__________CCUCU...GUU-5'\n_____________|_____________________|\n_____________122___________________100\n |
255 -- 261 |
101 -- 107 |
-20.5431 kcal/mol |
6.04584 kcal/mol |
2.24386 kcal/mol |
243 262@LB@ | |@LB@5'-CAG...GCGCG AC AAGCC...UGU-3'@LB@ AAGCCG AGCCUGGUGG@LB@ ||:||| ||||||:||:@LB@ UUUGGC UCGGACUACU@LB@3'-UUU...CAGUU ACUAA CCUCU...GUU-5'@LB@ | |@LB@ 122 100@LB@@LB@@LB@Energy -12.26 kcal/mol@LB@Hybridization Energy -20.5431 kcal/mol@LB@Unfolding Energy - mRNA 6.04584 kcal/mol@LB@Unfolding Energy - sRNA 2.24386 kcal/mol@LB@@LB@Position - mRNA 244 -- 261@LB@Position - sRNA 101 -- 121@LB@Position Seed - mRNA 255 -- 261@LB@Position Seed - sRNA 101 -- 107@LB@ |
| 130 |
0.002619 |
0.0912 |
pa1320 |
cyoD |
-12.20 |
0.057664 |
172 -- 192 |
99 -- 119 |
cytochrome o ubiquinol oxidase subunit IV |
|
_____________171____________________193\n_____________|______________________|\n5'-UUC...UCUUC_____C_UC_____________GCCCU...CGU-3'\n______________ACCGU_G__UA_CCUGAUGGGG\n______________|||||_|__||_|||||||:||\n______________UGGCA_C__AU_GGACUACUCC\n3'-UUU...GUUUU_______UA__C__________UCUAU...GUU-5'\n_____________|______________________|\n_____________120____________________98\n |
186 -- 192 |
99 -- 105 |
-23.5184 kcal/mol |
9.07359 kcal/mol |
2.24961 kcal/mol |
171 193@LB@ | |@LB@5'-UUC...UCUUC C UC GCCCU...CGU-3'@LB@ ACCGU G UA CCUGAUGGGG@LB@ ||||| | || |||||||:||@LB@ UGGCA C AU GGACUACUCC@LB@3'-UUU...GUUUU UA C UCUAU...GUU-5'@LB@ | |@LB@ 120 98@LB@@LB@@LB@Energy -12.20 kcal/mol@LB@Hybridization Energy -23.5184 kcal/mol@LB@Unfolding Energy - mRNA 9.07359 kcal/mol@LB@Unfolding Energy - sRNA 2.24961 kcal/mol@LB@@LB@Position - mRNA 172 -- 192@LB@Position - sRNA 99 -- 119@LB@Position Seed - mRNA 186 -- 192@LB@Position Seed - sRNA 99 -- 105@LB@ |
| 160 |
0.004014 |
0.115 |
pa3736 |
hom |
-12.18 |
0.058138 |
179 -- 203 |
72 -- 98 |
homoserine dehydrogenase |
|
_____________178_________________________204\n_____________|___________________________|\n5'-GAA...GUCGU______GA__________CA_______AAACC...CCG-3'\n______________AGGUGA__UGGGGAGUUC____GCGUG\n______________||:|:|__||::||||:|____|||||\n______________UCUAUU__ACUUCUCAGG____CGCAC\n3'-UUU...ACUCC______AG__________CUGA_____CCAGA...GUU-5'\n_____________|___________________________|\n_____________99__________________________71\n |
190 -- 196 |
81 -- 87 |
-26.8 kcal/mol |
8.47001 kcal/mol |
6.1492 kcal/mol |
178 204@LB@ | |@LB@5'-GAA...GUCGU GA CA AAACC...CCG-3'@LB@ AGGUGA UGGGGAGUUC GCGUG@LB@ ||:|:| ||::||||:| |||||@LB@ UCUAUU ACUUCUCAGG CGCAC@LB@3'-UUU...ACUCC AG CUGA CCAGA...GUU-5'@LB@ | |@LB@ 99 71@LB@@LB@@LB@Energy -12.18 kcal/mol@LB@Hybridization Energy -26.8 kcal/mol@LB@Unfolding Energy - mRNA 8.47001 kcal/mol@LB@Unfolding Energy - sRNA 6.1492 kcal/mol@LB@@LB@Position - mRNA 179 -- 203@LB@Position - sRNA 72 -- 98@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 81 -- 87@LB@ |
| 141 |
0.002959 |
0.09644 |
pa5519 |
N/A |
-12.18 |
0.058415 |
260 -- 272 |
100 -- 118 |
acyl-CoA thioesterase |
pa2693 |
_____________259_________________273\n_____________|___________________|\n5'-GGG...CCCGC___________________AGAAA...ACA-3'\n______________CCGU______CCUGAUGAG\n______________||||______|||||||||\n______________GGCA______GGACUACUC\n3'-UUU...UUUUU____CUAAUC_________CUCUA...GUU-5'\n_____________|___________________|\n_____________119_________________99\n |
266 -- 272 |
100 -- 106 |
-18.4857 kcal/mol |
4.06476 kcal/mol |
2.24889 kcal/mol |
259 273@LB@ | |@LB@5'-GGG...CCCGC AGAAA...ACA-3'@LB@ CCGU CCUGAUGAG@LB@ |||| |||||||||@LB@ GGCA GGACUACUC@LB@3'-UUU...UUUUU CUAAUC CUCUA...GUU-5'@LB@ | |@LB@ 119 99@LB@@LB@@LB@Energy -12.18 kcal/mol@LB@Hybridization Energy -18.4857 kcal/mol@LB@Unfolding Energy - mRNA 4.06476 kcal/mol@LB@Unfolding Energy - sRNA 2.24889 kcal/mol@LB@@LB@Position - mRNA 260 -- 272@LB@Position - sRNA 100 -- 118@LB@Position Seed - mRNA 266 -- 272@LB@Position Seed - sRNA 100 -- 106@LB@ |
| 27 |
6.94e-05 |
0.01177 |
pa5535 |
N/A |
-11.95 |
0.066023 |
197 -- 251 |
53 -- 120 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________196______________________________________________________________________252\n_____________|________________________________________________________________________|\n5'-GAG...UUACC________ACCAAC____AC_______________UCA______U_____CC__C_________________AAGAG...GGG-3'\n______________AACCGUGA______GCCU______________CUG______CCG_GCUGU__GG_UUUCUCGGC__GCCGGC\n______________||||||||______||||______________|||______|||_:|||:__||_|:||||:||__:|||||\n______________UUGGCACU______CGGA______________GAC______GGC_UGACG__CC_AGAGAGUCG__UGGCCG\n3'-UUU...AGUUU________AAU_______CUACUCCUCUAUUA___UUCUCA_________CA__C_________AA______ACUAG...GUU-5'\n_____________|________________________________________________________________________|\n_____________121______________________________________________________________________52\n |
239 -- 245 |
61 -- 67 |
-49.0988 kcal/mol |
18.4451 kcal/mol |
18.7053 kcal/mol |
196 252@LB@ | |@LB@5'-GAG...UUACC ACCAAC AC UCA U CC C AAGAG...GGG-3'@LB@ AACCGUGA GCCU CUG CCG GCUGU GG UUUCUCGGC GCCGGC@LB@ |||||||| |||| ||| ||| :|||: || |:||||:|| :|||||@LB@ UUGGCACU CGGA GAC GGC UGACG CC AGAGAGUCG UGGCCG@LB@3'-UUU...AGUUU AAU CUACUCCUCUAUUA UUCUCA CA C AA ACUAG...GUU-5'@LB@ | |@LB@ 121 52@LB@@LB@@LB@Energy -11.95 kcal/mol@LB@Hybridization Energy -49.0988 kcal/mol@LB@Unfolding Energy - mRNA 18.4451 kcal/mol@LB@Unfolding Energy - sRNA 18.7053 kcal/mol@LB@@LB@Position - mRNA 197 -- 251@LB@Position - sRNA 53 -- 120@LB@Position Seed - mRNA 239 -- 245@LB@Position Seed - sRNA 61 -- 67@LB@ |
| 138 |
0.002776 |
0.09245 |
pa0440 |
N/A |
-11.93 |
0.067049 |
197 -- 216 |
104 -- 120 |
oxidoreductase |
|
_____________196__________________217\n_____________|____________________|\n5'-CGA...GCUAC_________CGAUUC_____ACCAC...AGG-3'\n______________AACCGUGAU______CCUGA\n______________|||||||||______|||||\n______________UUGGCACUA______GGACU\n3'-UUU...AGUUU_________AUC________ACUCC...GUU-5'\n_____________|____________________|\n_____________121__________________103\n |
199 -- 205 |
112 -- 118 |
-17.8806 kcal/mol |
3.71535 kcal/mol |
2.24182 kcal/mol |
196 217@LB@ | |@LB@5'-CGA...GCUAC CGAUUC ACCAC...AGG-3'@LB@ AACCGUGAU CCUGA@LB@ ||||||||| |||||@LB@ UUGGCACUA GGACU@LB@3'-UUU...AGUUU AUC ACUCC...GUU-5'@LB@ | |@LB@ 121 103@LB@@LB@@LB@Energy -11.93 kcal/mol@LB@Hybridization Energy -17.8806 kcal/mol@LB@Unfolding Energy - mRNA 3.71535 kcal/mol@LB@Unfolding Energy - sRNA 2.24182 kcal/mol@LB@@LB@Position - mRNA 197 -- 216@LB@Position - sRNA 104 -- 120@LB@Position Seed - mRNA 199 -- 205@LB@Position Seed - sRNA 112 -- 118@LB@ |
| 47 |
0.0003012 |
0.02946 |
pa1776 |
sigX |
-11.73 |
0.074706 |
90 -- 102 |
103 -- 115 |
RNA polymerase sigma factor SigX |
|
_____________89____________103\n_____________|_____________|\n5'-CGU...CGAUA___C_________CUCAC...UGU-3'\n______________UGA_UGGCCUGAU\n______________|||_|:|||||||\n______________ACU_AUCGGACUA\n3'-UUU...UUGGC___A_________CUCCU...GUU-5'\n_____________|_____________|\n_____________116___________102\n |
96 -- 102 |
103 -- 109 |
-16.1519 kcal/mol |
2.30076 kcal/mol |
2.12156 kcal/mol |
89 103@LB@ | |@LB@5'-CGU...CGAUA C CUCAC...UGU-3'@LB@ UGA UGGCCUGAU@LB@ ||| |:|||||||@LB@ ACU AUCGGACUA@LB@3'-UUU...UUGGC A CUCCU...GUU-5'@LB@ | |@LB@ 116 102@LB@@LB@@LB@Energy -11.73 kcal/mol@LB@Hybridization Energy -16.1519 kcal/mol@LB@Unfolding Energy - mRNA 2.30076 kcal/mol@LB@Unfolding Energy - sRNA 2.12156 kcal/mol@LB@@LB@Position - mRNA 90 -- 102@LB@Position - sRNA 103 -- 115@LB@Position Seed - mRNA 96 -- 102@LB@Position Seed - sRNA 103 -- 109@LB@ |
| 185 |
0.004884 |
0.1213 |
pa2528 |
N/A |
-11.72 |
0.074904 |
177 -- 197 |
98 -- 118 |
resistance-nodulation-cell division (RND) efflux membrane fusion protein |
|
_____________176___________________198\n_____________|_____________________|\n5'-CUU...CGCCU____UCUA_______A__A__ACCAU...UGG-3'\n______________CCGU____AGCCUGA_GA_GA\n______________||||____|||||||_||_||\n______________GGCA____UCGGACU_CU_CU\n3'-UUU...UUUUU____CUAA_______A__C__CUAUU...GUU-5'\n_____________|_____________________|\n_____________119___________________97\n |
185 -- 191 |
104 -- 110 |
-18.0515 kcal/mol |
4.07956 kcal/mol |
2.25139 kcal/mol |
176 198@LB@ | |@LB@5'-CUU...CGCCU UCUA A A ACCAU...UGG-3'@LB@ CCGU AGCCUGA GA GA@LB@ |||| ||||||| || ||@LB@ GGCA UCGGACU CU CU@LB@3'-UUU...UUUUU CUAA A C CUAUU...GUU-5'@LB@ | |@LB@ 119 97@LB@@LB@@LB@Energy -11.72 kcal/mol@LB@Hybridization Energy -18.0515 kcal/mol@LB@Unfolding Energy - mRNA 4.07956 kcal/mol@LB@Unfolding Energy - sRNA 2.25139 kcal/mol@LB@@LB@Position - mRNA 177 -- 197@LB@Position - sRNA 98 -- 118@LB@Position Seed - mRNA 185 -- 191@LB@Position Seed - sRNA 104 -- 110@LB@ |
