| 31 |
8.059e-05 |
0.01177 |
pa5164 |
rmlC |
-15.78 |
0.005968 |
187 -- 204 |
101 -- 122 |
dTDP-4-dehydrorhamnose 3 5-epimerase |
|
_____________186____________________205\n_____________|______________________|\n5'-ACC...UGACC_________UA___________AAGCG...GCG-3'\n______________GAGACCGUG______CUGAUGA\n______________:|:||||||______|||||||\n______________UUUUGGCAC______GACUACU\n3'-UUU...CCAGU_________UAAUCG_______CCUCU...GUU-5'\n_____________|______________________|\n_____________123____________________100\n |
198 -- 204 |
101 -- 107 |
-20.9444 kcal/mol |
2.92213 kcal/mol |
2.24427 kcal/mol |
186 205@LB@ | |@LB@5'-ACC...UGACC UA AAGCG...GCG-3'@LB@ GAGACCGUG CUGAUGA@LB@ :|:|||||| |||||||@LB@ UUUUGGCAC GACUACU@LB@3'-UUU...CCAGU UAAUCG CCUCU...GUU-5'@LB@ | |@LB@ 123 100@LB@@LB@@LB@Energy -15.78 kcal/mol@LB@Hybridization Energy -20.9444 kcal/mol@LB@Unfolding Energy - mRNA 2.92213 kcal/mol@LB@Unfolding Energy - sRNA 2.24427 kcal/mol@LB@@LB@Position - mRNA 187 -- 204@LB@Position - sRNA 101 -- 122@LB@Position Seed - mRNA 198 -- 204@LB@Position Seed - sRNA 101 -- 107@LB@ |
| 115 |
0.001984 |
0.07883 |
pa3002 |
mfd |
-15.72 |
0.006234 |
203 -- 232 |
53 -- 84 |
transcription-repair coupling factor |
|
_____________202_______________________________233\n_____________|_________________________________|\n5'-GAU...CCCGU_____U_______C______C____C_______CAGCG...CCG-3'\n______________GUCCG_ACUGCGU____UUC_CAGC_UGCCGGC\n______________|||||_|||||||____:||_||||_|:|||||\n______________CAGGC_UGACGCA____GAG_GUCG_AUGGCCG\n3'-UUU...CUUCU_____________CCCA___A____A_______ACUAG...GUU-5'\n_____________|_________________________________|\n_____________85________________________________52\n |
226 -- 232 |
53 -- 59 |
-40.2071 kcal/mol |
10.3261 kcal/mol |
14.162 kcal/mol |
202 233@LB@ | |@LB@5'-GAU...CCCGU U C C C CAGCG...CCG-3'@LB@ GUCCG ACUGCGU UUC CAGC UGCCGGC@LB@ ||||| ||||||| :|| |||| |:|||||@LB@ CAGGC UGACGCA GAG GUCG AUGGCCG@LB@3'-UUU...CUUCU CCCA A A ACUAG...GUU-5'@LB@ | |@LB@ 85 52@LB@@LB@@LB@Energy -15.72 kcal/mol@LB@Hybridization Energy -40.2071 kcal/mol@LB@Unfolding Energy - mRNA 10.3261 kcal/mol@LB@Unfolding Energy - sRNA 14.162 kcal/mol@LB@@LB@Position - mRNA 203 -- 232@LB@Position - sRNA 53 -- 84@LB@Position Seed - mRNA 226 -- 232@LB@Position Seed - sRNA 53 -- 59@LB@ |
| 96 |
0.00134 |
0.06355 |
pa1641 |
N/A |
-15.72 |
0.006244 |
223 -- 294 |
34 -- 118 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________222______________________________________________________________________________________295\n_____________|________________________________________________________________________________________|\n5'-CGU...UCUGC____CC___C_____CCCU___________________________CC__CAAGACC__C______GA__A__G__C___________ACGCGG-3'\n______________CCGU__UUG_CCUGA____GG________________CCGGCUGCG__GG_______GC_UACCGG__GA_CU_CG_CGACCAGUUGG\n______________||||__||:_|||||____||________________|||:|||||__||_______||_||||||__||_||_||_||||||||||:\n______________GGCA__AAU_GGACU____CC________________GGCUGACGC__CC_______CG_AUGGCC__CU_GA_GC_GCUGGUCAACU\n3'-UUU...UUUUU____CU___C_____ACU___UCUAUUAGACUUCUCA_________AC__AGAGAGU__A______GA__A_________________CACUG...GUU-5'\n_____________|________________________________________________________________________________________|\n_____________119______________________________________________________________________________________33\n |
288 -- 294 |
34 -- 40 |
-66.8102 kcal/mol |
27.6932 kcal/mol |
23.4074 kcal/mol |
222 295@LB@ | |@LB@5'-CGU...UCUGC CC C CCCU CC CAAGACC C GA A G C ACGCGG-3'@LB@ CCGU UUG CCUGA GG CCGGCUGCG GG GC UACCGG GA CU CG CGACCAGUUGG@LB@ |||| ||: ||||| || |||:||||| || || |||||| || || || ||||||||||:@LB@ GGCA AAU GGACU CC GGCUGACGC CC CG AUGGCC CU GA GC GCUGGUCAACU@LB@3'-UUU...UUUUU CU C ACU UCUAUUAGACUUCUCA AC AGAGAGU A GA A CACUG...GUU-5'@LB@ | |@LB@ 119 33@LB@@LB@@LB@Energy -15.72 kcal/mol@LB@Hybridization Energy -66.8102 kcal/mol@LB@Unfolding Energy - mRNA 27.6932 kcal/mol@LB@Unfolding Energy - sRNA 23.4074 kcal/mol@LB@@LB@Position - mRNA 223 -- 294@LB@Position - sRNA 34 -- 118@LB@Position Seed - mRNA 288 -- 294@LB@Position Seed - sRNA 34 -- 40@LB@ |
| 120 |
0.002089 |
0.07999 |
pa3670 |
N/A |
-15.68 |
0.006401 |
170 -- 246 |
44 -- 120 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________169________________________________________________________________________________________247\n_____________|__________________________________________________________________________________________|\n5'-GCU...CGGUC________AGAA____GA___________________________GAAAC_____UU_______U___GCCGG____UU_______G___UGGCG...GGC-3'\n______________GACC_UGA____AGCC__AUGAGGGG__________GAGU_CGAU_____GCGUG__GUC_CUC_GGC_____GCUG__GCUGAUC_CGC\n______________:|||_|||____||||__||||||:|__________||||_|||:_____|||||__|||_|||_:||_____:|:|__|||||||_|||\n______________UUGG_ACU____UCGG__UACUCCUC__________CUCA_GCUG_____CGCAC__CAG_GAG_UCG_____UGGC__CGACUAG_GCG\n3'-UUU...AGUUU____C___AA______AC________UAUUAGACUU____G____A_________C____A_______AA________________A___CUGGU...GUU-5'\n_____________|__________________________________________________________________________________________|\n_____________121________________________________________________________________________________________43\n |
236 -- 242 |
48 -- 54 |
-64.9835 kcal/mol |
25.9985 kcal/mol |
23.3102 kcal/mol |
169 247@LB@ | |@LB@5'-GCU...CGGUC AGAA GA GAAAC UU U GCCGG UU G UGGCG...GGC-3'@LB@ GACC UGA AGCC AUGAGGGG GAGU CGAU GCGUG GUC CUC GGC GCUG GCUGAUC CGC@LB@ :||| ||| |||| ||||||:| |||| |||: ||||| ||| ||| :|| :|:| ||||||| |||@LB@ UUGG ACU UCGG UACUCCUC CUCA GCUG CGCAC CAG GAG UCG UGGC CGACUAG GCG@LB@3'-UUU...AGUUU C AA AC UAUUAGACUU G A C A AA A CUGGU...GUU-5'@LB@ | |@LB@ 121 43@LB@@LB@@LB@Energy -15.68 kcal/mol@LB@Hybridization Energy -64.9835 kcal/mol@LB@Unfolding Energy - mRNA 25.9985 kcal/mol@LB@Unfolding Energy - sRNA 23.3102 kcal/mol@LB@@LB@Position - mRNA 170 -- 246@LB@Position - sRNA 44 -- 120@LB@Position Seed - mRNA 236 -- 242@LB@Position Seed - sRNA 48 -- 54@LB@ |
| 72 |
0.0007723 |
0.0493 |
pa2659 |
N/A |
-15.67 |
0.006436 |
157 -- 217 |
75 -- 121 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________156____________________________________________________________218\n_____________|______________________________________________________________|\n5'-UUG...UCUGC_______C__A____AACAC__U___UUCCCAC_____GAU__CCA______AA________CCUGU...UGC-3'\n______________AAACCGU_GA__AGC_____GA_UGA_______GGAGA___UC___UGAAGA__CUGACUGC\n______________|||||||_||__|||_____||_|||_______|||||___||___||||||__|:||||||\n______________UUUGGCA_CU__UCG_____CU_ACU_______CCUCU___AG___ACUUCU__GGCUGACG\n3'-UUU...CAGUU__________AA___GA_____________________AUU___________CA________CACCC...GUU-5'\n_____________|______________________________________________________________|\n_____________122____________________________________________________________74\n |
211 -- 217 |
75 -- 81 |
-37.728 kcal/mol |
9.87154 kcal/mol |
12.1884 kcal/mol |
156 218@LB@ | |@LB@5'-UUG...UCUGC C A AACAC U UUCCCAC GAU CCA AA CCUGU...UGC-3'@LB@ AAACCGU GA AGC GA UGA GGAGA UC UGAAGA CUGACUGC@LB@ ||||||| || ||| || ||| ||||| || |||||| |:||||||@LB@ UUUGGCA CU UCG CU ACU CCUCU AG ACUUCU GGCUGACG@LB@3'-UUU...CAGUU AA GA AUU CA CACCC...GUU-5'@LB@ | |@LB@ 122 74@LB@@LB@@LB@Energy -15.67 kcal/mol@LB@Hybridization Energy -37.728 kcal/mol@LB@Unfolding Energy - mRNA 9.87154 kcal/mol@LB@Unfolding Energy - sRNA 12.1884 kcal/mol@LB@@LB@Position - mRNA 157 -- 217@LB@Position - sRNA 75 -- 121@LB@Position Seed - mRNA 211 -- 217@LB@Position Seed - sRNA 75 -- 81@LB@ |
| 184 |
0.004799 |
0.1199 |
pa1298 |
N/A |
-15.65 |
0.006528 |
2 -- 21 |
39 -- 58 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________1_____________________22\n_____________|_____________________|\n__________5'-C____________C________UCAUG...GCG-3'\n______________GCCGGC_GAUUU_CGCGACCA\n______________:|||||_|||:|_||||||||\n______________UGGCCG_CUAGA_GCGCUGGU\n3'-UUU...UCGAA______A______________CAACU...GUU-5'\n_____________|_____________________|\n_____________59____________________38\n |
15 -- 21 |
39 -- 45 |
-31.6445 kcal/mol |
4.93108 kcal/mol |
11.0618 kcal/mol |
1 22@LB@ | |@LB@ 5'-C C UCAUG...GCG-3'@LB@ GCCGGC GAUUU CGCGACCA@LB@ :||||| |||:| ||||||||@LB@ UGGCCG CUAGA GCGCUGGU@LB@3'-UUU...UCGAA A CAACU...GUU-5'@LB@ | |@LB@ 59 38@LB@@LB@@LB@Energy -15.65 kcal/mol@LB@Hybridization Energy -31.6445 kcal/mol@LB@Unfolding Energy - mRNA 4.93108 kcal/mol@LB@Unfolding Energy - sRNA 11.0618 kcal/mol@LB@@LB@Position - mRNA 2 -- 21@LB@Position - sRNA 39 -- 58@LB@Position Seed - mRNA 15 -- 21@LB@Position Seed - sRNA 39 -- 45@LB@ |
| 23 |
5.711e-05 |
0.01105 |
pa2967 |
fabG |
-15.49 |
0.007349 |
171 -- 236 |
53 -- 111 |
3-oxoacyl-[acyl-carrier-protein] reductase FabG |
|
_____________170__________________________________________________________________237\n_____________|____________________________________________________________________|\n5'-CCC...CGCCC________GAGAGAGAA______G____CCAU_________AAG__AA____GCA_____A_______GCCAG...UCG-3'\n______________UGGCCUGA_________AGGAGA_AAUC____GAGUCUG_C___GU__GGUC___UUGGU__ACCGGC\n______________|:||||||_________||||||_||||____|||||:|_|___||__||||___|::|:__||||||\n______________AUCGGACU_________UCCUCU_UUAG____CUCAGGC_G___CA__CCAG___AGUCG__UGGCCG\n3'-UUU...CACUA________AC_____________A____ACUU_______U_ACG__C_____AG______AA______ACUAG...GUU-5'\n_____________|____________________________________________________________________|\n_____________112__________________________________________________________________52\n |
203 -- 209 |
80 -- 86 |
-53.5207 kcal/mol |
19.3634 kcal/mol |
18.6748 kcal/mol |
170 237@LB@ | |@LB@5'-CCC...CGCCC GAGAGAGAA G CCAU AAG AA GCA A GCCAG...UCG-3'@LB@ UGGCCUGA AGGAGA AAUC GAGUCUG C GU GGUC UUGGU ACCGGC@LB@ |:|||||| |||||| |||| |||||:| | || |||| |::|: ||||||@LB@ AUCGGACU UCCUCU UUAG CUCAGGC G CA CCAG AGUCG UGGCCG@LB@3'-UUU...CACUA AC A ACUU U ACG C AG AA ACUAG...GUU-5'@LB@ | |@LB@ 112 52@LB@@LB@@LB@Energy -15.49 kcal/mol@LB@Hybridization Energy -53.5207 kcal/mol@LB@Unfolding Energy - mRNA 19.3634 kcal/mol@LB@Unfolding Energy - sRNA 18.6748 kcal/mol@LB@@LB@Position - mRNA 171 -- 236@LB@Position - sRNA 53 -- 111@LB@Position Seed - mRNA 203 -- 209@LB@Position Seed - sRNA 80 -- 86@LB@ |
| 28 |
7.532e-05 |
0.01177 |
pa2865 |
N/A |
-15.38 |
0.007930 |
179 -- 247 |
40 -- 110 |
glycosylase |
|
_____________178__________________________________________________________________________248\n_____________|____________________________________________________________________________|\n5'-CCG...CAUCG_______CCUCU_____CCUGGA___C_C________________________U_____U______G_________CUUGC...AAC-3'\n______________AGCCUGG_____GGAGA______UGA_G_GUCUG_UUGC_UG___CUUUC_GC_UUGCC_GCUGGU_CUCGC_ACC\n______________||||||:_____|||||______|||_|_|||:|_:|||_||___||:||_||_||:||_||||:|_|||||_|||\n______________UCGGACU_____CCUCU______ACU_C_CAGGC_GACG_AC___GAGAG_CG_AAUGG_CGACUA_GAGCG_UGG\n3'-UUU...ACUAA_______ACU_______AUUAG____U_U_____U____C__CCA_____U________C____________C___UCAAC...GUU-5'\n_____________|____________________________________________________________________________|\n_____________111__________________________________________________________________________39\n |
179 -- 185 |
104 -- 110 |
-64.7758 kcal/mol |
26.0418 kcal/mol |
23.3621 kcal/mol |
178 248@LB@ | |@LB@5'-CCG...CAUCG CCUCU CCUGGA C C U U G CUUGC...AAC-3'@LB@ AGCCUGG GGAGA UGA G GUCUG UUGC UG CUUUC GC UUGCC GCUGGU CUCGC ACC@LB@ ||||||: ||||| ||| | |||:| :||| || ||:|| || ||:|| ||||:| ||||| |||@LB@ UCGGACU CCUCU ACU C CAGGC GACG AC GAGAG CG AAUGG CGACUA GAGCG UGG@LB@3'-UUU...ACUAA ACU AUUAG U U U C CCA U C C UCAAC...GUU-5'@LB@ | |@LB@ 111 39@LB@@LB@@LB@Energy -15.38 kcal/mol@LB@Hybridization Energy -64.7758 kcal/mol@LB@Unfolding Energy - mRNA 26.0418 kcal/mol@LB@Unfolding Energy - sRNA 23.3621 kcal/mol@LB@@LB@Position - mRNA 179 -- 247@LB@Position - sRNA 40 -- 110@LB@Position Seed - mRNA 179 -- 185@LB@Position Seed - sRNA 104 -- 110@LB@ |
| 190 |
0.005086 |
0.123 |
pa0591 |
N/A |
-15.37 |
0.007942 |
156 -- 173 |
100 -- 120 |
protein ApaG |
|
_____________155___________________174\n_____________|_____________________|\n5'-UCA...CAGGC_____________________ACACU...CGG-3'\n______________AAUCGU___UAGUCUGAUGAG\n______________||:|||___|||:||||||||\n______________UUGGCA___AUCGGACUACUC\n3'-UUU...AGUUU______CUA____________CUCUA...GUU-5'\n_____________|_____________________|\n_____________121___________________99\n |
167 -- 173 |
100 -- 106 |
-22.6098 kcal/mol |
4.99015 kcal/mol |
2.24919 kcal/mol |
155 174@LB@ | |@LB@5'-UCA...CAGGC ACACU...CGG-3'@LB@ AAUCGU UAGUCUGAUGAG@LB@ ||:||| |||:||||||||@LB@ UUGGCA AUCGGACUACUC@LB@3'-UUU...AGUUU CUA CUCUA...GUU-5'@LB@ | |@LB@ 121 99@LB@@LB@@LB@Energy -15.37 kcal/mol@LB@Hybridization Energy -22.6098 kcal/mol@LB@Unfolding Energy - mRNA 4.99015 kcal/mol@LB@Unfolding Energy - sRNA 2.24919 kcal/mol@LB@@LB@Position - mRNA 156 -- 173@LB@Position - sRNA 100 -- 120@LB@Position Seed - mRNA 167 -- 173@LB@Position Seed - sRNA 100 -- 106@LB@ |
| 36 |
0.0001485 |
0.01896 |
pa2147 |
katE |
-15.32 |
0.008256 |
177 -- 207 |
74 -- 109 |
catalase HPII |
|
_____________176_____________________________________208\n_____________|_______________________________________|\n5'-CGU...UUCAU___CAG_____________________AA_____GA___AGCAG...AUC-3'\n______________GCC___GAUGAGGAGA________GGA__CCGAU__GCG\n______________|||___||||||||||________:||__||||:__|||\n______________CGG___CUACUCCUCU________UCU__GGCUG__CGC\n3'-UUU...CUAAU___A____________AUUAGACU___CA_____A____ACCCA...GUU-5'\n_____________|_______________________________________|\n_____________110_____________________________________73\n |
186 -- 192 |
96 -- 102 |
-32.3599 kcal/mol |
5.50185 kcal/mol |
11.5406 kcal/mol |
176 208@LB@ | |@LB@5'-CGU...UUCAU CAG AA GA AGCAG...AUC-3'@LB@ GCC GAUGAGGAGA GGA CCGAU GCG@LB@ ||| |||||||||| :|| ||||: |||@LB@ CGG CUACUCCUCU UCU GGCUG CGC@LB@3'-UUU...CUAAU A AUUAGACU CA A ACCCA...GUU-5'@LB@ | |@LB@ 110 73@LB@@LB@@LB@Energy -15.32 kcal/mol@LB@Hybridization Energy -32.3599 kcal/mol@LB@Unfolding Energy - mRNA 5.50185 kcal/mol@LB@Unfolding Energy - sRNA 11.5406 kcal/mol@LB@@LB@Position - mRNA 177 -- 207@LB@Position - sRNA 74 -- 109@LB@Position Seed - mRNA 186 -- 192@LB@Position Seed - sRNA 96 -- 102@LB@ |
