| 91 |
0.001223 |
0.06177 |
pa3618 |
N/A |
-14.35 |
0.015718 |
191 -- 224 |
76 -- 123 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________190_______________________________________________225\n_____________|_________________________________________________|\n5'-GAG...CCCUG______A_____GAC_______________________________C__ACCGC...CCG-3'\n______________GAGAAC_GUGAU___CCUGAUG_______________GAGUCCGAC_UG\n______________:|:|||_|||||___|||||||_______________|||||||||_||\n______________UUUUUG_CACUA___GGACUAC_______________CUCAGGCUG_AC\n3'-UUU...CCCAG______G_____AUC_______UCCUCUAUUAGACUU____________GCACC...GUU-5'\n_____________|_________________________________________________|\n_____________124_______________________________________________75\n |
215 -- 221 |
78 -- 84 |
-35.9898 kcal/mol |
9.49172 kcal/mol |
12.1513 kcal/mol |
190 225@LB@ | |@LB@5'-GAG...CCCUG A GAC C ACCGC...CCG-3'@LB@ GAGAAC GUGAU CCUGAUG GAGUCCGAC UG@LB@ :|:||| ||||| ||||||| ||||||||| ||@LB@ UUUUUG CACUA GGACUAC CUCAGGCUG AC@LB@3'-UUU...CCCAG G AUC UCCUCUAUUAGACUU GCACC...GUU-5'@LB@ | |@LB@ 124 75@LB@@LB@@LB@Energy -14.35 kcal/mol@LB@Hybridization Energy -35.9898 kcal/mol@LB@Unfolding Energy - mRNA 9.49172 kcal/mol@LB@Unfolding Energy - sRNA 12.1513 kcal/mol@LB@@LB@Position - mRNA 191 -- 224@LB@Position - sRNA 76 -- 123@LB@Position Seed - mRNA 215 -- 221@LB@Position Seed - sRNA 78 -- 84@LB@ |
| 90 |
0.001223 |
0.06177 |
pa1071 |
braF |
-14.34 |
0.015804 |
45 -- 124 |
40 -- 117 |
ABC transporter ATP-binding protein |
|
_____________44______________________________________________________________________________________125\n_____________|_______________________________________________________________________________________|\n5'-AUC...CUCGG______ACUC___GCG__U__U______G___C_______AG__AA____C_____CAAC__AA_____CAU_______________UGACC...UGG-3'\n______________CGUGAU____GCC____G_GG_GAUGGU_CUG_____UCC__GA__UGCG_GGGUU_____G__UACCG___GCUGAUCUU_CGGCC\n______________||||||____|||____|_||_|||::|_|||_____|||__||__||||_||||:_____|__|||||___||||||||:_||:||\n______________GCACUA____CGG____C_CC_CUAUUA_GAC_____AGG__CU__ACGC_CCCAG_____C__AUGGC___CGACUAGAG_GCUGG\n3'-UUU...UUUUG______AU_____ACUA_U__U__________UUCUC_______G_____A_____AGAGU_GA_________________C_____UCAAC...GUU-5'\n_____________|_______________________________________________________________________________________|\n_____________118_____________________________________________________________________________________39\n |
112 -- 118 |
47 -- 53 |
-64.1742 kcal/mol |
26.441 kcal/mol |
23.3958 kcal/mol |
44 125@LB@ | |@LB@5'-AUC...CUCGG ACUC GCG U U G C AG AA C CAAC AA CAU UGACC...UGG-3'@LB@ CGUGAU GCC G GG GAUGGU CUG UCC GA UGCG GGGUU G UACCG GCUGAUCUU CGGCC@LB@ |||||| ||| | || |||::| ||| ||| || |||| ||||: | ||||| ||||||||: ||:||@LB@ GCACUA CGG C CC CUAUUA GAC AGG CU ACGC CCCAG C AUGGC CGACUAGAG GCUGG@LB@3'-UUU...UUUUG AU ACUA U U UUCUC G A AGAGU GA C UCAAC...GUU-5'@LB@ | |@LB@ 118 39@LB@@LB@@LB@Energy -14.34 kcal/mol@LB@Hybridization Energy -64.1742 kcal/mol@LB@Unfolding Energy - mRNA 26.441 kcal/mol@LB@Unfolding Energy - sRNA 23.3958 kcal/mol@LB@@LB@Position - mRNA 45 -- 124@LB@Position - sRNA 40 -- 117@LB@Position Seed - mRNA 112 -- 118@LB@Position Seed - sRNA 47 -- 53@LB@ |
| 61 |
0.0005242 |
0.0395 |
pa4564 |
N/A |
-14.31 |
0.016198 |
190 -- 242 |
35 -- 89 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________189______________________________________________________243\n_____________|________________________________________________________|\n5'-AGC...UCUGA______GG___A____CAAG____GCG__G_______G_________U________CCGGC...UCG-3'\n______________GGAGAG__CGA_UGCG_____CUC___GG_UUGCUGG_UGGUCU_GC_GCU_GUUG\n______________|:||||__|||_||||_____|||___:|_||:|:||_||:|||_||_:|:_||||\n______________CUUCUC__GCU_ACGC_____GAG___UC_AAUGGCC_ACUAGA_CG_UGG_CAAC\n3'-UUU...UUAGA______AG___G____ACCCA___AG___G_______G______G__C___U____UCACU...GUU-5'\n_____________|________________________________________________________|\n_____________90_______________________________________________________34\n |
219 -- 225 |
54 -- 60 |
-52.8641 kcal/mol |
19.5279 kcal/mol |
19.034 kcal/mol |
189 243@LB@ | |@LB@5'-AGC...UCUGA GG A CAAG GCG G G U CCGGC...UCG-3'@LB@ GGAGAG CGA UGCG CUC GG UUGCUGG UGGUCU GC GCU GUUG@LB@ |:|||| ||| |||| ||| :| ||:|:|| ||:||| || :|: ||||@LB@ CUUCUC GCU ACGC GAG UC AAUGGCC ACUAGA CG UGG CAAC@LB@3'-UUU...UUAGA AG G ACCCA AG G G G C U UCACU...GUU-5'@LB@ | |@LB@ 90 34@LB@@LB@@LB@Energy -14.31 kcal/mol@LB@Hybridization Energy -52.8641 kcal/mol@LB@Unfolding Energy - mRNA 19.5279 kcal/mol@LB@Unfolding Energy - sRNA 19.034 kcal/mol@LB@@LB@Position - mRNA 190 -- 242@LB@Position - sRNA 35 -- 89@LB@Position Seed - mRNA 219 -- 225@LB@Position Seed - sRNA 54 -- 60@LB@ |
| 50 |
0.0003784 |
0.03426 |
pa2805 |
N/A |
-14.24 |
0.016920 |
210 -- 223 |
74 -- 88 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________209_____________224\n_____________|_______________|\n5'-GCG...CGAAA_______________CGAAC...UCC-3'\n______________GAGAGUCUG_CUGCG\n______________:||||||:|_|||||\n______________UUCUCAGGC_GACGC\n3'-UUU...UAGAC_________U_____ACCCA...GUU-5'\n_____________|_______________|\n_____________89______________73\n |
212 -- 218 |
80 -- 86 |
-22.4876 kcal/mol |
2.4453 kcal/mol |
5.80631 kcal/mol |
209 224@LB@ | |@LB@5'-GCG...CGAAA CGAAC...UCC-3'@LB@ GAGAGUCUG CUGCG@LB@ :||||||:| |||||@LB@ UUCUCAGGC GACGC@LB@3'-UUU...UAGAC U ACCCA...GUU-5'@LB@ | |@LB@ 89 73@LB@@LB@@LB@Energy -14.24 kcal/mol@LB@Hybridization Energy -22.4876 kcal/mol@LB@Unfolding Energy - mRNA 2.4453 kcal/mol@LB@Unfolding Energy - sRNA 5.80631 kcal/mol@LB@@LB@Position - mRNA 210 -- 223@LB@Position - sRNA 74 -- 88@LB@Position Seed - mRNA 212 -- 218@LB@Position Seed - sRNA 80 -- 86@LB@ |
| 133 |
0.002661 |
0.0912 |
pa2511 |
N/A |
-14.22 |
0.017134 |
181 -- 210 |
98 -- 119 |
transcriptional regulator |
|
_____________180____________________________211\n_____________|______________________________|\n5'-CGG...GCCUU______UCGAGU___GAACCA_________CCCAU...CGC-3'\n______________GCCGUG______GCC______UGAUGAGGA\n______________:|||||______|||______|||||||||\n______________UGGCAC______CGG______ACUACUCCU\n3'-UUU...GUUUU______UAAU____________________CUAUU...GUU-5'\n_____________|______________________________|\n_____________120____________________________97\n |
204 -- 210 |
98 -- 104 |
-24.6889 kcal/mol |
8.22136 kcal/mol |
2.25153 kcal/mol |
180 211@LB@ | |@LB@5'-CGG...GCCUU UCGAGU GAACCA CCCAU...CGC-3'@LB@ GCCGUG GCC UGAUGAGGA@LB@ :||||| ||| |||||||||@LB@ UGGCAC CGG ACUACUCCU@LB@3'-UUU...GUUUU UAAU CUAUU...GUU-5'@LB@ | |@LB@ 120 97@LB@@LB@@LB@Energy -14.22 kcal/mol@LB@Hybridization Energy -24.6889 kcal/mol@LB@Unfolding Energy - mRNA 8.22136 kcal/mol@LB@Unfolding Energy - sRNA 2.25153 kcal/mol@LB@@LB@Position - mRNA 181 -- 210@LB@Position - sRNA 98 -- 119@LB@Position Seed - mRNA 204 -- 210@LB@Position Seed - sRNA 98 -- 104@LB@ |
| 156 |
0.00379 |
0.1117 |
pa3495 |
nth |
-14.09 |
0.018638 |
94 -- 117 |
105 -- 123 |
endonuclease III |
|
_____________93_______________________118\n_____________|________________________|\n5'-UGG...CCCUG_________AUC___GAA______GCGGA...UCA-3'\n______________AAGAACCGU___GAU___AGCCUG\n______________||:||||||___|||___||||||\n______________UUUUUGGCA___CUA___UCGGAC\n3'-UUU...CCCAG_______________A________UACUC...GUU-5'\n_____________|________________________|\n_____________124______________________104\n |
96 -- 102 |
115 -- 121 |
-18.312 kcal/mol |
1.98459 kcal/mol |
2.24275 kcal/mol |
93 118@LB@ | |@LB@5'-UGG...CCCUG AUC GAA GCGGA...UCA-3'@LB@ AAGAACCGU GAU AGCCUG@LB@ ||:|||||| ||| ||||||@LB@ UUUUUGGCA CUA UCGGAC@LB@3'-UUU...CCCAG A UACUC...GUU-5'@LB@ | |@LB@ 124 104@LB@@LB@@LB@Energy -14.09 kcal/mol@LB@Hybridization Energy -18.312 kcal/mol@LB@Unfolding Energy - mRNA 1.98459 kcal/mol@LB@Unfolding Energy - sRNA 2.24275 kcal/mol@LB@@LB@Position - mRNA 94 -- 117@LB@Position - sRNA 105 -- 123@LB@Position Seed - mRNA 96 -- 102@LB@Position Seed - sRNA 115 -- 121@LB@ |
| 161 |
0.004027 |
0.115 |
pa0009 |
glyQ |
-13.96 |
0.020216 |
43 -- 68 |
95 -- 119 |
glycine--tRNA ligase subunit alpha |
|
_____________42_________________________69\n_____________|__________________________|\n5'-GAA...UCCUC________A____A__UA________CGUCG...ACG-3'\n______________AUCGUGGU_GGCC_UG__GAGGGGAU\n______________|:||||:|_:|||_||__||||:|||\n______________UGGCACUA_UCGG_AC__CUCCUCUA\n3'-UUU...GUUUU________A_______UA________UUAGA...GUU-5'\n_____________|__________________________|\n_____________120________________________94\n |
62 -- 68 |
95 -- 101 |
-28.6932 kcal/mol |
8.89956 kcal/mol |
5.83995 kcal/mol |
42 69@LB@ | |@LB@5'-GAA...UCCUC A A UA CGUCG...ACG-3'@LB@ AUCGUGGU GGCC UG GAGGGGAU@LB@ |:||||:| :||| || ||||:|||@LB@ UGGCACUA UCGG AC CUCCUCUA@LB@3'-UUU...GUUUU A UA UUAGA...GUU-5'@LB@ | |@LB@ 120 94@LB@@LB@@LB@Energy -13.96 kcal/mol@LB@Hybridization Energy -28.6932 kcal/mol@LB@Unfolding Energy - mRNA 8.89956 kcal/mol@LB@Unfolding Energy - sRNA 5.83995 kcal/mol@LB@@LB@Position - mRNA 43 -- 68@LB@Position - sRNA 95 -- 119@LB@Position Seed - mRNA 62 -- 68@LB@Position Seed - sRNA 95 -- 101@LB@ |
| 78 |
0.000864 |
0.05078 |
pa4263 |
rplC |
-13.85 |
0.021626 |
50 -- 71 |
101 -- 122 |
50S ribosomal protein L3 |
|
_____________49_______________________72\n_____________|________________________|\n5'-CGA...CGGAU________C_______G_______AGCUC...AUC-3'\n______________AAAACCGU_GAU__GC_CUGAUGA\n______________||||||||_|||__||_|||||||\n______________UUUUGGCA_CUA__CG_GACUACU\n3'-UUU...CCAGU____________AU__________CCUCU...GUU-5'\n_____________|________________________|\n_____________123______________________100\n |
65 -- 71 |
101 -- 107 |
-22.5702 kcal/mol |
6.47727 kcal/mol |
2.24427 kcal/mol |
49 72@LB@ | |@LB@5'-CGA...CGGAU C G AGCUC...AUC-3'@LB@ AAAACCGU GAU GC CUGAUGA@LB@ |||||||| ||| || |||||||@LB@ UUUUGGCA CUA CG GACUACU@LB@3'-UUU...CCAGU AU CCUCU...GUU-5'@LB@ | |@LB@ 123 100@LB@@LB@@LB@Energy -13.85 kcal/mol@LB@Hybridization Energy -22.5702 kcal/mol@LB@Unfolding Energy - mRNA 6.47727 kcal/mol@LB@Unfolding Energy - sRNA 2.24427 kcal/mol@LB@@LB@Position - mRNA 50 -- 71@LB@Position - sRNA 101 -- 122@LB@Position Seed - mRNA 65 -- 71@LB@Position Seed - sRNA 101 -- 107@LB@ |
| 146 |
0.003267 |
0.1028 |
pa0918 |
N/A |
-13.83 |
0.021920 |
192 -- 207 |
107 -- 122 |
cytochrome b561 |
|
_____________191______________208\n_____________|________________|\n5'-CCA...GAGAA___________G____GGAAA...AAC-3'\n______________GGAACCGUGAU_AGCU\n______________::|||||||||_|||:\n______________UUUUGGCACUA_UCGG\n3'-UUU...CCAGU___________A____ACUAC...GUU-5'\n_____________|________________|\n_____________123______________106\n |
196 -- 202 |
112 -- 118 |
-20.0543 kcal/mol |
3.98833 kcal/mol |
2.23582 kcal/mol |
191 208@LB@ | |@LB@5'-CCA...GAGAA G GGAAA...AAC-3'@LB@ GGAACCGUGAU AGCU@LB@ ::||||||||| |||:@LB@ UUUUGGCACUA UCGG@LB@3'-UUU...CCAGU A ACUAC...GUU-5'@LB@ | |@LB@ 123 106@LB@@LB@@LB@Energy -13.83 kcal/mol@LB@Hybridization Energy -20.0543 kcal/mol@LB@Unfolding Energy - mRNA 3.98833 kcal/mol@LB@Unfolding Energy - sRNA 2.23582 kcal/mol@LB@@LB@Position - mRNA 192 -- 207@LB@Position - sRNA 107 -- 122@LB@Position Seed - mRNA 196 -- 202@LB@Position Seed - sRNA 112 -- 118@LB@ |
| 194 |
0.005258 |
0.1243 |
pa3808 |
N/A |
-13.66 |
0.024437 |
189 -- 216 |
98 -- 123 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________188__________________________217\n_____________|____________________________|\n5'-CGC...UAGUA_____G____CAAUG_______AAU___CCGAU...GGC-3'\n______________GAGGA_CGUG_____AGCCUGA___GGA\n______________:|::|_||||_____|||||||___|||\n______________UUUUU_GCAC_____UCGGACU___CCU\n3'-UUU...CCCAG_____G____UAA_________ACU___CUAUU...GUU-5'\n_____________|____________________________|\n_____________124__________________________97\n |
204 -- 210 |
104 -- 110 |
-22.3129 kcal/mol |
6.40825 kcal/mol |
2.25245 kcal/mol |
188 217@LB@ | |@LB@5'-CGC...UAGUA G CAAUG AAU CCGAU...GGC-3'@LB@ GAGGA CGUG AGCCUGA GGA@LB@ :|::| |||| ||||||| |||@LB@ UUUUU GCAC UCGGACU CCU@LB@3'-UUU...CCCAG G UAA ACU CUAUU...GUU-5'@LB@ | |@LB@ 124 97@LB@@LB@@LB@Energy -13.66 kcal/mol@LB@Hybridization Energy -22.3129 kcal/mol@LB@Unfolding Energy - mRNA 6.40825 kcal/mol@LB@Unfolding Energy - sRNA 2.25245 kcal/mol@LB@@LB@Position - mRNA 189 -- 216@LB@Position - sRNA 98 -- 123@LB@Position Seed - mRNA 204 -- 210@LB@Position Seed - sRNA 104 -- 110@LB@ |
