| 165 |
0.004162 |
0.1159 |
pa1850 |
N/A |
-12.78 |
0.041348 |
242 -- 255 |
104 -- 117 |
transcriptional regulator |
|
_____________241____________256\n_____________|______________|\n5'-AUA...CCCGA______G_______ACGUG...AAC-3'\n______________CGUGAU_AGCCUGG\n______________||||||_||||||:\n______________GCACUA_UCGGACU\n3'-UUU...UUUUG______A_______ACUCC...GUU-5'\n_____________|______________|\n_____________118____________103\n |
249 -- 255 |
104 -- 110 |
-19.8167 kcal/mol |
4.81117 kcal/mol |
2.2292 kcal/mol |
241 256@LB@ | |@LB@5'-AUA...CCCGA G ACGUG...AAC-3'@LB@ CGUGAU AGCCUGG@LB@ |||||| ||||||:@LB@ GCACUA UCGGACU@LB@3'-UUU...UUUUG A ACUCC...GUU-5'@LB@ | |@LB@ 118 103@LB@@LB@@LB@Energy -12.78 kcal/mol@LB@Hybridization Energy -19.8167 kcal/mol@LB@Unfolding Energy - mRNA 4.81117 kcal/mol@LB@Unfolding Energy - sRNA 2.2292 kcal/mol@LB@@LB@Position - mRNA 242 -- 255@LB@Position - sRNA 104 -- 117@LB@Position Seed - mRNA 249 -- 255@LB@Position Seed - sRNA 104 -- 110@LB@ |
| 100 |
0.001607 |
0.07384 |
pa0607 |
rpe |
-12.76 |
0.041806 |
177 -- 194 |
99 -- 118 |
ribulose-phosphate 3-epimerase |
|
_____________176__________________195\n_____________|____________________|\n5'-CCG...GCCUU_______CC____U______UGCGC...UUC-3'\n______________CCGUGAU___CCU__UGAGG\n______________|||||||___|||__|||||\n______________GGCACUA___GGA__ACUCC\n3'-UUU...UUUUU_______AUC___CU_____UCUAU...GUU-5'\n_____________|____________________|\n_____________119__________________98\n |
177 -- 183 |
112 -- 118 |
-19.2108 kcal/mol |
4.20353 kcal/mol |
2.24947 kcal/mol |
176 195@LB@ | |@LB@5'-CCG...GCCUU CC U UGCGC...UUC-3'@LB@ CCGUGAU CCU UGAGG@LB@ ||||||| ||| |||||@LB@ GGCACUA GGA ACUCC@LB@3'-UUU...UUUUU AUC CU UCUAU...GUU-5'@LB@ | |@LB@ 119 98@LB@@LB@@LB@Energy -12.76 kcal/mol@LB@Hybridization Energy -19.2108 kcal/mol@LB@Unfolding Energy - mRNA 4.20353 kcal/mol@LB@Unfolding Energy - sRNA 2.24947 kcal/mol@LB@@LB@Position - mRNA 177 -- 194@LB@Position - sRNA 99 -- 118@LB@Position Seed - mRNA 177 -- 183@LB@Position Seed - sRNA 112 -- 118@LB@ |
| 48 |
0.0003226 |
0.03063 |
pa2507 |
catA |
-12.73 |
0.042466 |
203 -- 291 |
39 -- 120 |
catechol 1 2-dioxygenase |
|
_____________202_______________________________________________________________________________________________292\n_____________|_________________________________________________________________________________________________|\n5'-AUC...GCCAU________AGAUUUCCCAGACU________UCC__CGCU___UC______G__A______GCCAG______A_GA__G______________C____AGGCC...UGG-3'\n______________GACCGUGA______________GCC_GAUG___AG____UCU__GAAGAG_CC____GCG_______CUCA_C__AC_CGGC_GAUC_CGCG_ACCA\n______________:|||||||______________|||_||||___||____|||__||||||_||____|||_______||||_|__||_||||_||||_||||_||||\n______________UUGGCACU______________CGG_CUAC___UC____AGA__CUUCUC_GG____CGC_______GAGU_G__UG_GCCG_CUAG_GCGC_UGGU\n3'-UUU...AGUUU________AAU______________A____UCC__UAUU___________A__CUGA___ACCCAGA____C_AA_______A____A_________CAACU...GUU-5'\n_____________|_________________________________________________________________________________________________|\n_____________121_______________________________________________________________________________________________38\n |
204 -- 210 |
113 -- 119 |
-61.825 kcal/mol |
25.692 kcal/mol |
23.4063 kcal/mol |
202 292@LB@ | |@LB@5'-AUC...GCCAU AGAUUUCCCAGACU UCC CGCU UC G A GCCAG A GA G C AGGCC...UGG-3'@LB@ GACCGUGA GCC GAUG AG UCU GAAGAG CC GCG CUCA C AC CGGC GAUC CGCG ACCA@LB@ :||||||| ||| |||| || ||| |||||| || ||| |||| | || |||| |||| |||| ||||@LB@ UUGGCACU CGG CUAC UC AGA CUUCUC GG CGC GAGU G UG GCCG CUAG GCGC UGGU@LB@3'-UUU...AGUUU AAU A UCC UAUU A CUGA ACCCAGA C AA A A CAACU...GUU-5'@LB@ | |@LB@ 121 38@LB@@LB@@LB@Energy -12.73 kcal/mol@LB@Hybridization Energy -61.825 kcal/mol@LB@Unfolding Energy - mRNA 25.692 kcal/mol@LB@Unfolding Energy - sRNA 23.4063 kcal/mol@LB@@LB@Position - mRNA 203 -- 291@LB@Position - sRNA 39 -- 120@LB@Position Seed - mRNA 204 -- 210@LB@Position Seed - sRNA 113 -- 119@LB@ |
| 166 |
0.004233 |
0.117 |
pa2585 |
uvrC |
-12.59 |
0.046141 |
89 -- 105 |
106 -- 123 |
excinuclease ABC subunit C |
|
_____________88_________________106\n_____________|__________________|\n5'-CGC...UCGCC___________A______AUCGC...UGG-3'\n______________GAAGACCGUGA_UA_CCU\n______________:||:|||||||_||_|||\n______________UUUUUGGCACU_AU_GGA\n3'-UUU...CCCAG___________A__C___CUACU...GUU-5'\n_____________|__________________|\n_____________124________________105\n |
93 -- 99 |
113 -- 119 |
-17.5883 kcal/mol |
2.75927 kcal/mol |
2.24138 kcal/mol |
88 106@LB@ | |@LB@5'-CGC...UCGCC A AUCGC...UGG-3'@LB@ GAAGACCGUGA UA CCU@LB@ :||:||||||| || |||@LB@ UUUUUGGCACU AU GGA@LB@3'-UUU...CCCAG A C CUACU...GUU-5'@LB@ | |@LB@ 124 105@LB@@LB@@LB@Energy -12.59 kcal/mol@LB@Hybridization Energy -17.5883 kcal/mol@LB@Unfolding Energy - mRNA 2.75927 kcal/mol@LB@Unfolding Energy - sRNA 2.24138 kcal/mol@LB@@LB@Position - mRNA 89 -- 105@LB@Position - sRNA 106 -- 123@LB@Position Seed - mRNA 93 -- 99@LB@Position Seed - sRNA 113 -- 119@LB@ |
| 178 |
0.004573 |
0.1181 |
pa0900 |
N/A |
-12.48 |
0.049102 |
209 -- 242 |
75 -- 111 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________208___________________________________243\n_____________|_____________________________________|\n5'-UCC...UCCGA_______CAACU_____CC________UA_____G__ACCCA...UGU-3'\n______________UAGCCUG_______GAU__UC_GAAGA__CCGAC_GC\n______________|||||||_______|||__||_|||||__|||||_||\n______________AUCGGAC_______CUA__AG_CUUCU__GGCUG_CG\n3'-UUU...CACUA_______UACUCCU___UU__A_____CA_____A__CACCC...GUU-5'\n_____________|_____________________________________|\n_____________112___________________________________74\n |
209 -- 215 |
105 -- 111 |
-29.9732 kcal/mol |
5.9478 kcal/mol |
11.5432 kcal/mol |
208 243@LB@ | |@LB@5'-UCC...UCCGA CAACU CC UA G ACCCA...UGU-3'@LB@ UAGCCUG GAU UC GAAGA CCGAC GC@LB@ ||||||| ||| || ||||| ||||| ||@LB@ AUCGGAC CUA AG CUUCU GGCUG CG@LB@3'-UUU...CACUA UACUCCU UU A CA A CACCC...GUU-5'@LB@ | |@LB@ 112 74@LB@@LB@@LB@Energy -12.48 kcal/mol@LB@Hybridization Energy -29.9732 kcal/mol@LB@Unfolding Energy - mRNA 5.9478 kcal/mol@LB@Unfolding Energy - sRNA 11.5432 kcal/mol@LB@@LB@Position - mRNA 209 -- 242@LB@Position - sRNA 75 -- 111@LB@Position Seed - mRNA 209 -- 215@LB@Position Seed - sRNA 105 -- 111@LB@ |
| 134 |
0.002678 |
0.0912 |
pa1421 |
gbuA |
-12.45 |
0.050008 |
184 -- 195 |
107 -- 120 |
guanidinobutyrase |
|
_____________183____________196\n_____________|______________|\n5'-UCC...ACAAC______________ACCCC...CCG-3'\n______________GACCGUGA__GGCC\n______________:|||||||__:|||\n______________UUGGCACU__UCGG\n3'-UUU...AGUUU________AA____ACUAC...GUU-5'\n_____________|______________|\n_____________121____________106\n |
185 -- 191 |
113 -- 119 |
-18.3112 kcal/mol |
3.63401 kcal/mol |
2.2351 kcal/mol |
183 196@LB@ | |@LB@5'-UCC...ACAAC ACCCC...CCG-3'@LB@ GACCGUGA GGCC@LB@ :||||||| :|||@LB@ UUGGCACU UCGG@LB@3'-UUU...AGUUU AA ACUAC...GUU-5'@LB@ | |@LB@ 121 106@LB@@LB@@LB@Energy -12.45 kcal/mol@LB@Hybridization Energy -18.3112 kcal/mol@LB@Unfolding Energy - mRNA 3.63401 kcal/mol@LB@Unfolding Energy - sRNA 2.2351 kcal/mol@LB@@LB@Position - mRNA 184 -- 195@LB@Position - sRNA 107 -- 120@LB@Position Seed - mRNA 185 -- 191@LB@Position Seed - sRNA 113 -- 119@LB@ |
| 181 |
0.004727 |
0.1199 |
pa2509 |
catB |
-12.44 |
0.050225 |
208 -- 226 |
106 -- 121 |
muconate cycloisomerase I |
|
_____________207_________________227\n_____________|___________________|\n5'-GGC...GAGCC__________CCAA_____CGAGU...CCC-3'\n______________AAGCCGUGAU____AGCCU\n______________||:|||||||____|||||\n______________UUUGGCACUA____UCGGA\n3'-UUU...CAGUU__________A________CUACU...GUU-5'\n_____________|___________________|\n_____________122_________________105\n |
211 -- 217 |
112 -- 118 |
-19.0549 kcal/mol |
4.37421 kcal/mol |
2.24058 kcal/mol |
207 227@LB@ | |@LB@5'-GGC...GAGCC CCAA CGAGU...CCC-3'@LB@ AAGCCGUGAU AGCCU@LB@ ||:||||||| |||||@LB@ UUUGGCACUA UCGGA@LB@3'-UUU...CAGUU A CUACU...GUU-5'@LB@ | |@LB@ 122 105@LB@@LB@@LB@Energy -12.44 kcal/mol@LB@Hybridization Energy -19.0549 kcal/mol@LB@Unfolding Energy - mRNA 4.37421 kcal/mol@LB@Unfolding Energy - sRNA 2.24058 kcal/mol@LB@@LB@Position - mRNA 208 -- 226@LB@Position - sRNA 106 -- 121@LB@Position Seed - mRNA 211 -- 217@LB@Position Seed - sRNA 112 -- 118@LB@ |
| 118 |
0.002082 |
0.07999 |
pa5066 |
hisI |
-12.42 |
0.050876 |
194 -- 221 |
100 -- 123 |
phosphoribosyl-AMP cyclohydrolase |
|
_____________193__________________________222\n_____________|____________________________|\n5'-CGA...CGUGG_______A___AAGAC_____G______AUUCA...GGA-3'\n______________AAAGACC_UGA_____UGGCU_GAUGAG\n______________|||:|||_|||_____|:||:_||||||\n______________UUUUUGG_ACU_____AUCGG_CUACUC\n3'-UUU...CCCAG_______C___A_________A______CUCUA...GUU-5'\n_____________|____________________________|\n_____________124__________________________99\n |
194 -- 200 |
117 -- 123 |
-21.0853 kcal/mol |
6.41847 kcal/mol |
2.24995 kcal/mol |
193 222@LB@ | |@LB@5'-CGA...CGUGG A AAGAC G AUUCA...GGA-3'@LB@ AAAGACC UGA UGGCU GAUGAG@LB@ |||:||| ||| |:||: ||||||@LB@ UUUUUGG ACU AUCGG CUACUC@LB@3'-UUU...CCCAG C A A CUCUA...GUU-5'@LB@ | |@LB@ 124 99@LB@@LB@@LB@Energy -12.42 kcal/mol@LB@Hybridization Energy -21.0853 kcal/mol@LB@Unfolding Energy - mRNA 6.41847 kcal/mol@LB@Unfolding Energy - sRNA 2.24995 kcal/mol@LB@@LB@Position - mRNA 194 -- 221@LB@Position - sRNA 100 -- 123@LB@Position Seed - mRNA 194 -- 200@LB@Position Seed - sRNA 117 -- 123@LB@ |
| 136 |
0.00271 |
0.09122 |
pa0516 |
nirF |
-12.42 |
0.050980 |
176 -- 250 |
51 -- 109 |
heme d1 biosynthesis protein NirF |
pa0519 pa0509 |
_____________175___________________________________________________________________________251\n_____________|_____________________________________________________________________________|\n5'-UCC...GGACC_______C_A___________GCCCCA____CCU_C____C___C___CC_CU___C____CCCU___C________UAGCC...UCG-3'\n______________GCCUGAU_G_AGGAGA_GAUC______UGAA___G_GUCC__CU_GCG__G__UCU_CUCA____GCU_GCCGGCUG\n______________|||||||_|_||||||_:|||______||||___|_||||__||_|||__|__|||_||||____|||_:|||||||\n______________CGGACUA_C_UCCUCU_UUAG______ACUU___C_CAGG__GA_CGC__C__AGA_GAGU____CGA_UGGCCGAC\n3'-UUU...CUAAU________________A__________________U____CU______A__CC_______________A________UAGAG...GUU-5'\n_____________|_____________________________________________________________________________|\n_____________110___________________________________________________________________________50\n |
244 -- 250 |
51 -- 57 |
-56.426 kcal/mol |
22.2414 kcal/mol |
21.7733 kcal/mol |
175 251@LB@ | |@LB@5'-UCC...GGACC C A GCCCCA CCU C C C CC CU C CCCU C UAGCC...UCG-3'@LB@ GCCUGAU G AGGAGA GAUC UGAA G GUCC CU GCG G UCU CUCA GCU GCCGGCUG@LB@ ||||||| | |||||| :||| |||| | |||| || ||| | ||| |||| ||| :|||||||@LB@ CGGACUA C UCCUCU UUAG ACUU C CAGG GA CGC C AGA GAGU CGA UGGCCGAC@LB@3'-UUU...CUAAU A U CU A CC A UAGAG...GUU-5'@LB@ | |@LB@ 110 50@LB@@LB@@LB@Energy -12.42 kcal/mol@LB@Hybridization Energy -56.426 kcal/mol@LB@Unfolding Energy - mRNA 22.2414 kcal/mol@LB@Unfolding Energy - sRNA 21.7733 kcal/mol@LB@@LB@Position - mRNA 176 -- 250@LB@Position - sRNA 51 -- 109@LB@Position Seed - mRNA 244 -- 250@LB@Position Seed - sRNA 51 -- 57@LB@ |
| 86 |
0.001073 |
0.05733 |
pa0916 |
N/A |
-12.39 |
0.051807 |
188 -- 200 |
107 -- 119 |
ribosomal protein S12 methylthiotransferase RimO |
|
_____________187___________201\n_____________|_____________|\n5'-GUC...CGCCU____A________AUGUC...GCU-3'\n______________ACCG_GGUUAGCC\n______________||||_|:||||||\n______________UGGC_CUAAUCGG\n3'-UUU...GUUUU____A________ACUAC...GUU-5'\n_____________|_____________|\n_____________120___________106\n |
194 -- 200 |
107 -- 113 |
-18.1643 kcal/mol |
3.54951 kcal/mol |
2.23484 kcal/mol |
187 201@LB@ | |@LB@5'-GUC...CGCCU A AUGUC...GCU-3'@LB@ ACCG GGUUAGCC@LB@ |||| |:||||||@LB@ UGGC CUAAUCGG@LB@3'-UUU...GUUUU A ACUAC...GUU-5'@LB@ | |@LB@ 120 106@LB@@LB@@LB@Energy -12.39 kcal/mol@LB@Hybridization Energy -18.1643 kcal/mol@LB@Unfolding Energy - mRNA 3.54951 kcal/mol@LB@Unfolding Energy - sRNA 2.23484 kcal/mol@LB@@LB@Position - mRNA 188 -- 200@LB@Position - sRNA 107 -- 119@LB@Position Seed - mRNA 194 -- 200@LB@Position Seed - sRNA 107 -- 113@LB@ |
