| 158 |
0.003862 |
0.1123 |
pa4780 |
N/A |
-10.69 |
0.128339 |
184 -- 207 |
98 -- 122 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________183________________________208\n_____________|__________________________|\n5'-AGG...CCCGA_______C_______A_C_____A__CACCC...UGG-3'\n______________GGAACCG_G__UAGC_C_GAUGA_GA\n______________::|||||_|__||||_|_|||||_||\n______________UUUUGGC_C__AUCG_G_CUACU_CU\n3'-UUU...CCAGU_______A_UA______A_____C__CUAUU...GUU-5'\n_____________|__________________________|\n_____________123________________________97\n |
184 -- 190 |
116 -- 122 |
-18.2775 kcal/mol |
5.33909 kcal/mol |
2.25226 kcal/mol |
183 208@LB@ | |@LB@5'-AGG...CCCGA C A C A CACCC...UGG-3'@LB@ GGAACCG G UAGC C GAUGA GA@LB@ ::||||| | |||| | ||||| ||@LB@ UUUUGGC C AUCG G CUACU CU@LB@3'-UUU...CCAGU A UA A C CUAUU...GUU-5'@LB@ | |@LB@ 123 97@LB@@LB@@LB@Energy -10.69 kcal/mol@LB@Hybridization Energy -18.2775 kcal/mol@LB@Unfolding Energy - mRNA 5.33909 kcal/mol@LB@Unfolding Energy - sRNA 2.25226 kcal/mol@LB@@LB@Position - mRNA 184 -- 207@LB@Position - sRNA 98 -- 122@LB@Position Seed - mRNA 184 -- 190@LB@Position Seed - sRNA 116 -- 122@LB@ |
| 193 |
0.005243 |
0.1243 |
pa3725 |
recJ |
-10.65 |
0.130688 |
184 -- 203 |
102 -- 119 |
single-stranded-DNA-specific exonuclease RecJ |
|
_____________183__________________204\n_____________|____________________|\n5'-CGU...GUCGA____AAC__GUGA_______CGUAU...GCG-3'\n______________GCCG___GA____CCUGAUG\n______________:|||___||____|||||||\n______________UGGC___CU____GGACUAC\n3'-UUU...GUUUU____A____AAUC_______UCCUC...GUU-5'\n_____________|____________________|\n_____________120__________________101\n |
197 -- 203 |
102 -- 108 |
-15.7224 kcal/mol |
2.82992 kcal/mol |
2.24274 kcal/mol |
183 204@LB@ | |@LB@5'-CGU...GUCGA AAC GUGA CGUAU...GCG-3'@LB@ GCCG GA CCUGAUG@LB@ :||| || |||||||@LB@ UGGC CU GGACUAC@LB@3'-UUU...GUUUU A AAUC UCCUC...GUU-5'@LB@ | |@LB@ 120 101@LB@@LB@@LB@Energy -10.65 kcal/mol@LB@Hybridization Energy -15.7224 kcal/mol@LB@Unfolding Energy - mRNA 2.82992 kcal/mol@LB@Unfolding Energy - sRNA 2.24274 kcal/mol@LB@@LB@Position - mRNA 184 -- 203@LB@Position - sRNA 102 -- 119@LB@Position Seed - mRNA 197 -- 203@LB@Position Seed - sRNA 102 -- 108@LB@ |
| 102 |
0.001679 |
0.07499 |
pa2657 |
N/A |
-10.65 |
0.130856 |
243 -- 261 |
104 -- 121 |
two-component response regulator |
|
_____________242_________________262\n_____________|___________________|\n5'-GGU...CCGAC______A___CC_______CCCGC...GCC-3'\n______________GAACUG_UGG__AGCCUGA\n______________:|||:|_||:__|||||||\n______________UUUGGC_ACU__UCGGACU\n3'-UUU...CAGUU__________AA_______ACUCC...GUU-5'\n_____________|___________________|\n_____________122_________________103\n |
255 -- 261 |
104 -- 110 |
-18.2987 kcal/mol |
5.4095 kcal/mol |
2.24203 kcal/mol |
242 262@LB@ | |@LB@5'-GGU...CCGAC A CC CCCGC...GCC-3'@LB@ GAACUG UGG AGCCUGA@LB@ :|||:| ||: |||||||@LB@ UUUGGC ACU UCGGACU@LB@3'-UUU...CAGUU AA ACUCC...GUU-5'@LB@ | |@LB@ 122 103@LB@@LB@@LB@Energy -10.65 kcal/mol@LB@Hybridization Energy -18.2987 kcal/mol@LB@Unfolding Energy - mRNA 5.4095 kcal/mol@LB@Unfolding Energy - sRNA 2.24203 kcal/mol@LB@@LB@Position - mRNA 243 -- 261@LB@Position - sRNA 104 -- 121@LB@Position Seed - mRNA 255 -- 261@LB@Position Seed - sRNA 104 -- 110@LB@ |
| 12 |
1.22e-05 |
0.004211 |
pa3312 |
N/A |
-10.60 |
0.134070 |
231 -- 250 |
100 -- 119 |
3-hydroxyisobutyrate dehydrogenase |
|
_____________230__________________251\n_____________|____________________|\n5'-CGG...CCUUC____GUCUC___________CGUGC...UGU-3'\n______________GCCG_____GGCCUGAUGGG\n______________:|||_____:||||||||:|\n______________UGGC_____UCGGACUACUC\n3'-UUU...GUUUU____ACUAA___________CUCUA...GUU-5'\n_____________|____________________|\n_____________120__________________99\n |
244 -- 250 |
100 -- 106 |
-24.2186 kcal/mol |
11.3713 kcal/mol |
2.24903 kcal/mol |
230 251@LB@ | |@LB@5'-CGG...CCUUC GUCUC CGUGC...UGU-3'@LB@ GCCG GGCCUGAUGGG@LB@ :||| :||||||||:|@LB@ UGGC UCGGACUACUC@LB@3'-UUU...GUUUU ACUAA CUCUA...GUU-5'@LB@ | |@LB@ 120 99@LB@@LB@@LB@Energy -10.60 kcal/mol@LB@Hybridization Energy -24.2186 kcal/mol@LB@Unfolding Energy - mRNA 11.3713 kcal/mol@LB@Unfolding Energy - sRNA 2.24903 kcal/mol@LB@@LB@Position - mRNA 231 -- 250@LB@Position - sRNA 100 -- 119@LB@Position Seed - mRNA 244 -- 250@LB@Position Seed - sRNA 100 -- 106@LB@ |
| 195 |
0.005273 |
0.1243 |
pa4698 |
N/A |
-10.50 |
0.140691 |
227 -- 236 |
35 -- 44 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________226________237\n_____________|__________|\n5'-CUC...CUGGC__________UUGCU...AAG-3'\n______________CGACCAGUUG\n______________||||||||||\n______________GCUGGUCAAC\n3'-UUU...AGAGC__________UCACU...GUU-5'\n_____________|__________|\n_____________45_________34\n |
230 -- 236 |
35 -- 41 |
-16.2278 kcal/mol |
3.48351 kcal/mol |
2.24737 kcal/mol |
226 237@LB@ | |@LB@5'-CUC...CUGGC UUGCU...AAG-3'@LB@ CGACCAGUUG@LB@ ||||||||||@LB@ GCUGGUCAAC@LB@3'-UUU...AGAGC UCACU...GUU-5'@LB@ | |@LB@ 45 34@LB@@LB@@LB@Energy -10.50 kcal/mol@LB@Hybridization Energy -16.2278 kcal/mol@LB@Unfolding Energy - mRNA 3.48351 kcal/mol@LB@Unfolding Energy - sRNA 2.24737 kcal/mol@LB@@LB@Position - mRNA 227 -- 236@LB@Position - sRNA 35 -- 44@LB@Position Seed - mRNA 230 -- 236@LB@Position Seed - sRNA 35 -- 41@LB@ |
| 182 |
0.004765 |
0.1199 |
pa1522 |
N/A |
-10.50 |
0.140829 |
28 -- 41 |
106 -- 119 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________27_____________42\n_____________|______________|\n5'-AUC...AGGAC_______CC_____CGCCG...CCG-3'\n______________GCCGUGG__AGCCU\n______________:|||||:__|||||\n______________UGGCACU__UCGGA\n3'-UUU...GUUUU_______AA_____CUACU...GUU-5'\n_____________|______________|\n_____________120____________105\n |
28 -- 34 |
113 -- 119 |
-17.7026 kcal/mol |
4.96349 kcal/mol |
2.24014 kcal/mol |
27 42@LB@ | |@LB@5'-AUC...AGGAC CC CGCCG...CCG-3'@LB@ GCCGUGG AGCCU@LB@ :|||||: |||||@LB@ UGGCACU UCGGA@LB@3'-UUU...GUUUU AA CUACU...GUU-5'@LB@ | |@LB@ 120 105@LB@@LB@@LB@Energy -10.50 kcal/mol@LB@Hybridization Energy -17.7026 kcal/mol@LB@Unfolding Energy - mRNA 4.96349 kcal/mol@LB@Unfolding Energy - sRNA 2.24014 kcal/mol@LB@@LB@Position - mRNA 28 -- 41@LB@Position - sRNA 106 -- 119@LB@Position Seed - mRNA 28 -- 34@LB@Position Seed - sRNA 113 -- 119@LB@ |
| 129 |
0.002597 |
0.0912 |
pa2983 |
N/A |
-10.36 |
0.150975 |
196 -- 207 |
70 -- 82 |
translocation protein TolQ |
|
_____________195___________208\n_____________|_____________|\n5'-AGC...AUAUG_____________AACUG...UGC-3'\n______________CC_ACUGUGUGGG\n______________||_||||:|||||\n______________GG_UGACGCACCC\n3'-UUU...UCUCA__C__________AGAGA...GUU-5'\n_____________|_____________|\n_____________83____________69\n |
201 -- 207 |
70 -- 76 |
-20.9892 kcal/mol |
6.52553 kcal/mol |
4.10497 kcal/mol |
195 208@LB@ | |@LB@5'-AGC...AUAUG AACUG...UGC-3'@LB@ CC ACUGUGUGGG@LB@ || ||||:|||||@LB@ GG UGACGCACCC@LB@3'-UUU...UCUCA C AGAGA...GUU-5'@LB@ | |@LB@ 83 69@LB@@LB@@LB@Energy -10.36 kcal/mol@LB@Hybridization Energy -20.9892 kcal/mol@LB@Unfolding Energy - mRNA 6.52553 kcal/mol@LB@Unfolding Energy - sRNA 4.10497 kcal/mol@LB@@LB@Position - mRNA 196 -- 207@LB@Position - sRNA 70 -- 82@LB@Position Seed - mRNA 201 -- 207@LB@Position Seed - sRNA 70 -- 76@LB@ |
| 144 |
0.003137 |
0.1001 |
pa1516 |
N/A |
-10.35 |
0.151671 |
51 -- 72 |
44 -- 62 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________50_____________________73\n_____________|______________________|\n5'-GUG...GGCCU__A_____________GG____CCGGC...AGA-3'\n______________GC_UUGCCGGUUGAUC__UCGC\n______________||_||:||||:|||||__||||\n______________CG_AAUGGCCGACUAG__AGCG\n3'-UUU...AGAGU______________________CUGGU...GUU-5'\n_____________|______________________|\n_____________63_____________________43\n |
57 -- 63 |
51 -- 57 |
-28.648 kcal/mol |
8.16614 kcal/mol |
10.1396 kcal/mol |
50 73@LB@ | |@LB@5'-GUG...GGCCU A GG CCGGC...AGA-3'@LB@ GC UUGCCGGUUGAUC UCGC@LB@ || ||:||||:||||| ||||@LB@ CG AAUGGCCGACUAG AGCG@LB@3'-UUU...AGAGU CUGGU...GUU-5'@LB@ | |@LB@ 63 43@LB@@LB@@LB@Energy -10.35 kcal/mol@LB@Hybridization Energy -28.648 kcal/mol@LB@Unfolding Energy - mRNA 8.16614 kcal/mol@LB@Unfolding Energy - sRNA 10.1396 kcal/mol@LB@@LB@Position - mRNA 51 -- 72@LB@Position - sRNA 44 -- 62@LB@Position Seed - mRNA 57 -- 63@LB@Position Seed - sRNA 51 -- 57@LB@ |
| 52 |
0.0004019 |
0.03518 |
pa4012 |
N/A |
-10.34 |
0.152385 |
122 -- 132 |
100 -- 110 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________121_________133\n_____________|___________|\n5'-CAU...CGAUG___________CGUUG...GCU-3'\n______________AGCCUGAUGGG\n______________|||||||||:|\n______________UCGGACUACUC\n3'-UUU...ACUAA___________CUCUA...GUU-5'\n_____________|___________|\n_____________111_________99\n |
126 -- 132 |
100 -- 106 |
-17.6316 kcal/mol |
5.13362 kcal/mol |
2.15723 kcal/mol |
121 133@LB@ | |@LB@5'-CAU...CGAUG CGUUG...GCU-3'@LB@ AGCCUGAUGGG@LB@ |||||||||:|@LB@ UCGGACUACUC@LB@3'-UUU...ACUAA CUCUA...GUU-5'@LB@ | |@LB@ 111 99@LB@@LB@@LB@Energy -10.34 kcal/mol@LB@Hybridization Energy -17.6316 kcal/mol@LB@Unfolding Energy - mRNA 5.13362 kcal/mol@LB@Unfolding Energy - sRNA 2.15723 kcal/mol@LB@@LB@Position - mRNA 122 -- 132@LB@Position - sRNA 100 -- 110@LB@Position Seed - mRNA 126 -- 132@LB@Position Seed - sRNA 100 -- 106@LB@ |
| 123 |
0.00223 |
0.08331 |
pa0552 |
pgk |
-10.33 |
0.153234 |
163 -- 259 |
42 -- 119 |
phosphoglycerate kinase |
|
_____________162________________________________________________________________________________________________________260\n_____________|__________________________________________________________________________________________________________|\n5'-CAC...GCGCC_________________CAACAAGUACCCA____CU___U___AUGACCGUGU_______________ACCUCGAC___AAA___AA__G__U_____________GGACC...GCG-3'\n______________GCCGU_____GCCUGAU_____________AGGA__GAU_GUC__________UGAAGA___UGACUG________CUC___GGU__GC_CG_GCUGAUC_CGCGA\n______________:||||_____|||||||_____________||||__|||_:||__________||||||___:|||||________|||___:|:__:|_||_|||||||_|||||\n______________UGGCA_____CGGACUA_____________UCCU__CUA_UAG__________ACUUCU___GCUGAC________GAG___UCG__UG_GC_CGACUAG_GCGCU\n3'-UUU...GUUUU_____CUAAU_______C_____________________U___________________CAG______GCACCCA____AG____AA_____________A_____GGUCA...GUU-5'\n_____________|__________________________________________________________________________________________________________|\n_____________120________________________________________________________________________________________________________41\n |
248 -- 254 |
48 -- 54 |
-58.6651 kcal/mol |
25.0123 kcal/mol |
23.3319 kcal/mol |
162 260@LB@ | |@LB@5'-CAC...GCGCC CAACAAGUACCCA CU U AUGACCGUGU ACCUCGAC AAA AA G U GGACC...GCG-3'@LB@ GCCGU GCCUGAU AGGA GAU GUC UGAAGA UGACUG CUC GGU GC CG GCUGAUC CGCGA@LB@ :|||| ||||||| |||| ||| :|| |||||| :||||| ||| :|: :| || ||||||| |||||@LB@ UGGCA CGGACUA UCCU CUA UAG ACUUCU GCUGAC GAG UCG UG GC CGACUAG GCGCU@LB@3'-UUU...GUUUU CUAAU C U CAG GCACCCA AG AA A GGUCA...GUU-5'@LB@ | |@LB@ 120 41@LB@@LB@@LB@Energy -10.33 kcal/mol@LB@Hybridization Energy -58.6651 kcal/mol@LB@Unfolding Energy - mRNA 25.0123 kcal/mol@LB@Unfolding Energy - sRNA 23.3319 kcal/mol@LB@@LB@Position - mRNA 163 -- 259@LB@Position - sRNA 42 -- 119@LB@Position Seed - mRNA 248 -- 254@LB@Position Seed - sRNA 48 -- 54@LB@ |
