104 |
0.00171 |
0.07531 |
pa4333 |
N/A |
-8.52 |
0.338548 |
151 -- 157 |
40 -- 46 |
fumarase |
|
_____________150_____158\n_____________|_______|\n5'-UAG...GGCUC_______CUGCC...AUG-3'\n______________CGUGACC\n______________||:||||\n______________GCGCUGG\n3'-UUU...CUAGA_______UCAAC...GUU-5'\n_____________|_______|\n_____________47______39\n |
151 -- 157 |
40 -- 46 |
-12.3245 kcal/mol |
0.149051 kcal/mol |
3.65718 kcal/mol |
150 158@LB@ | |@LB@5'-UAG...GGCUC CUGCC...AUG-3'@LB@ CGUGACC@LB@ ||:||||@LB@ GCGCUGG@LB@3'-UUU...CUAGA UCAAC...GUU-5'@LB@ | |@LB@ 47 39@LB@@LB@@LB@Energy -8.52 kcal/mol@LB@Hybridization Energy -12.3245 kcal/mol@LB@Unfolding Energy - mRNA 0.149051 kcal/mol@LB@Unfolding Energy - sRNA 3.65718 kcal/mol@LB@@LB@Position - mRNA 151 -- 157@LB@Position - sRNA 40 -- 46@LB@Position Seed - mRNA 151 -- 157@LB@Position Seed - sRNA 40 -- 46@LB@ |
159 |
0.003984 |
0.115 |
pa2627 |
N/A |
-8.37 |
0.359084 |
22 -- 39 |
38 -- 59 |
high frequency lysogenization protein HflD |
|
_____________21_____________________40\n_____________|______________________|\n5'-CGC...UGCGC_______A______________GACUG...CCC-3'\n______________UACCGGC_GA____GCGACCAG\n______________|||||||_||____||||||||\n______________AUGGCCG_CU____CGCUGGUC\n3'-UUU...GUCGA_______A__AGAG________AACUC...GUU-5'\n_____________|______________________|\n_____________60_____________________37\n |
33 -- 39 |
38 -- 44 |
-28.3931 kcal/mol |
8.63241 kcal/mol |
11.3994 kcal/mol |
21 40@LB@ | |@LB@5'-CGC...UGCGC A GACUG...CCC-3'@LB@ UACCGGC GA GCGACCAG@LB@ ||||||| || ||||||||@LB@ AUGGCCG CU CGCUGGUC@LB@3'-UUU...GUCGA A AGAG AACUC...GUU-5'@LB@ | |@LB@ 60 37@LB@@LB@@LB@Energy -8.37 kcal/mol@LB@Hybridization Energy -28.3931 kcal/mol@LB@Unfolding Energy - mRNA 8.63241 kcal/mol@LB@Unfolding Energy - sRNA 11.3994 kcal/mol@LB@@LB@Position - mRNA 22 -- 39@LB@Position - sRNA 38 -- 59@LB@Position Seed - mRNA 33 -- 39@LB@Position Seed - sRNA 38 -- 44@LB@ |
17 |
3.089e-05 |
0.008352 |
pa5396 |
N/A |
-7.92 |
0.424136 |
180 -- 186 |
104 -- 110 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________179_____187\n_____________|_______|\n5'-CGC...CGCCC_______AAGGG...GCC-3'\n______________AGCCUGA\n______________|||||||\n______________UCGGACU\n3'-UUU...ACUAA_______ACUCC...GUU-5'\n_____________|_______|\n_____________111_____103\n |
180 -- 186 |
104 -- 110 |
-11.2317 kcal/mol |
1.21017 kcal/mol |
2.10482 kcal/mol |
179 187@LB@ | |@LB@5'-CGC...CGCCC AAGGG...GCC-3'@LB@ AGCCUGA@LB@ |||||||@LB@ UCGGACU@LB@3'-UUU...ACUAA ACUCC...GUU-5'@LB@ | |@LB@ 111 103@LB@@LB@@LB@Energy -7.92 kcal/mol@LB@Hybridization Energy -11.2317 kcal/mol@LB@Unfolding Energy - mRNA 1.21017 kcal/mol@LB@Unfolding Energy - sRNA 2.10482 kcal/mol@LB@@LB@Position - mRNA 180 -- 186@LB@Position - sRNA 104 -- 110@LB@Position Seed - mRNA 180 -- 186@LB@Position Seed - sRNA 104 -- 110@LB@ |
114 |
0.001956 |
0.07883 |
pa1616 |
N/A |
-7.83 |
0.436748 |
16 -- 25 |
101 -- 110 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________15_________26\n_____________|__________|\n5'-GGC...ACGGC__________CUUUC...AGA-3'\n______________AGCCUGAUGG\n______________|||||||||:\n______________UCGGACUACU\n3'-UUU...ACUAA__________CCUCU...GUU-5'\n_____________|__________|\n_____________111________100\n |
19 -- 25 |
101 -- 107 |
-16.0192 kcal/mol |
6.07491 kcal/mol |
2.11196 kcal/mol |
15 26@LB@ | |@LB@5'-GGC...ACGGC CUUUC...AGA-3'@LB@ AGCCUGAUGG@LB@ |||||||||:@LB@ UCGGACUACU@LB@3'-UUU...ACUAA CCUCU...GUU-5'@LB@ | |@LB@ 111 100@LB@@LB@@LB@Energy -7.83 kcal/mol@LB@Hybridization Energy -16.0192 kcal/mol@LB@Unfolding Energy - mRNA 6.07491 kcal/mol@LB@Unfolding Energy - sRNA 2.11196 kcal/mol@LB@@LB@Position - mRNA 16 -- 25@LB@Position - sRNA 101 -- 110@LB@Position Seed - mRNA 19 -- 25@LB@Position Seed - sRNA 101 -- 107@LB@ |
109 |
0.001808 |
0.07562 |
pa0202 |
N/A |
-7.70 |
0.456423 |
178 -- 185 |
75 -- 82 |
amidase |
pa4342 |
_____________177______186\n_____________|________|\n5'-CCC...CCUUC________CAAGG...UGC-3'\n______________UCGACUGC\n______________:|||||||\n______________GGCUGACG\n3'-UUU...UCUCA________CACCC...GUU-5'\n_____________|________|\n_____________83_______74\n |
179 -- 185 |
75 -- 81 |
-13.4138 kcal/mol |
1.61599 kcal/mol |
4.09516 kcal/mol |
177 186@LB@ | |@LB@5'-CCC...CCUUC CAAGG...UGC-3'@LB@ UCGACUGC@LB@ :|||||||@LB@ GGCUGACG@LB@3'-UUU...UCUCA CACCC...GUU-5'@LB@ | |@LB@ 83 74@LB@@LB@@LB@Energy -7.70 kcal/mol@LB@Hybridization Energy -13.4138 kcal/mol@LB@Unfolding Energy - mRNA 1.61599 kcal/mol@LB@Unfolding Energy - sRNA 4.09516 kcal/mol@LB@@LB@Position - mRNA 178 -- 185@LB@Position - sRNA 75 -- 82@LB@Position Seed - mRNA 179 -- 185@LB@Position Seed - sRNA 75 -- 81@LB@ |
175 |
0.004467 |
0.1171 |
pa2047 |
N/A |
-7.63 |
0.467709 |
171 -- 177 |
103 -- 109 |
transcriptional regulator |
|
_____________170_____178\n_____________|_______|\n5'-CCC...UGCUU_______CCUGC...CCG-3'\n______________GCCUGAU\n______________|||||||\n______________CGGACUA\n3'-UUU...CUAAU_______CUCCU...GUU-5'\n_____________|_______|\n_____________110_____102\n |
171 -- 177 |
103 -- 109 |
-11.5321 kcal/mol |
1.79595 kcal/mol |
2.10421 kcal/mol |
170 178@LB@ | |@LB@5'-CCC...UGCUU CCUGC...CCG-3'@LB@ GCCUGAU@LB@ |||||||@LB@ CGGACUA@LB@3'-UUU...CUAAU CUCCU...GUU-5'@LB@ | |@LB@ 110 102@LB@@LB@@LB@Energy -7.63 kcal/mol@LB@Hybridization Energy -11.5321 kcal/mol@LB@Unfolding Energy - mRNA 1.79595 kcal/mol@LB@Unfolding Energy - sRNA 2.10421 kcal/mol@LB@@LB@Position - mRNA 171 -- 177@LB@Position - sRNA 103 -- 109@LB@Position Seed - mRNA 171 -- 177@LB@Position Seed - sRNA 103 -- 109@LB@ |
128 |
0.00255 |
0.0912 |
pa3463 |
N/A |
-7.51 |
0.486845 |
225 -- 240 |
104 -- 122 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________224_________________241\n_____________|___________________|\n5'-UCG...UGCUC_______ACAC________ACAAC...CGC-3'\n______________GAAGCCG_______CCUGA\n______________:||:|||_______|||||\n______________UUUUGGC_______GGACU\n3'-UUU...CCAGU_______ACUAAUC_____ACUCC...GUU-5'\n_____________|___________________|\n_____________123_________________103\n |
225 -- 231 |
116 -- 122 |
-12.6194 kcal/mol |
2.87159 kcal/mol |
2.24249 kcal/mol |
224 241@LB@ | |@LB@5'-UCG...UGCUC ACAC ACAAC...CGC-3'@LB@ GAAGCCG CCUGA@LB@ :||:||| |||||@LB@ UUUUGGC GGACU@LB@3'-UUU...CCAGU ACUAAUC ACUCC...GUU-5'@LB@ | |@LB@ 123 103@LB@@LB@@LB@Energy -7.51 kcal/mol@LB@Hybridization Energy -12.6194 kcal/mol@LB@Unfolding Energy - mRNA 2.87159 kcal/mol@LB@Unfolding Energy - sRNA 2.24249 kcal/mol@LB@@LB@Position - mRNA 225 -- 240@LB@Position - sRNA 104 -- 122@LB@Position Seed - mRNA 225 -- 231@LB@Position Seed - sRNA 116 -- 122@LB@ |
1 |
0 |
0 |
pa3775 |
N/A |
-6.65 |
0.627514 |
32 -- 38 |
50 -- 56 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________31______39\n_____________|_______|\n5'-CGA...CGGCA_______AGCCG...UGU-3'\n______________CGGCUGA\n______________|||||||\n______________GCCGACU\n3'-UUU...GAAUG_______AGAGC...GUU-5'\n_____________|_______|\n_____________57______49\n |
32 -- 38 |
50 -- 56 |
-12.177 kcal/mol |
0.20262 kcal/mol |
5.33178 kcal/mol |
31 39@LB@ | |@LB@5'-CGA...CGGCA AGCCG...UGU-3'@LB@ CGGCUGA@LB@ |||||||@LB@ GCCGACU@LB@3'-UUU...GAAUG AGAGC...GUU-5'@LB@ | |@LB@ 57 49@LB@@LB@@LB@Energy -6.65 kcal/mol@LB@Hybridization Energy -12.177 kcal/mol@LB@Unfolding Energy - mRNA 0.20262 kcal/mol@LB@Unfolding Energy - sRNA 5.33178 kcal/mol@LB@@LB@Position - mRNA 32 -- 38@LB@Position - sRNA 50 -- 56@LB@Position Seed - mRNA 32 -- 38@LB@Position Seed - sRNA 50 -- 56@LB@ |
192 |
0.005234 |
0.1243 |
pa1840 |
N/A |
-6.31 |
0.681723 |
125 -- 149 |
99 -- 122 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________124_________________________150\n_____________|___________________________|\n5'-GCA...GCGCC_______GC_______G_____G____UCUUG...ACG-3'\n______________GAGAUCG__GA__GGC_CUGGU_GAGG\n______________:|:|:||__||__:||_|||:|_||||\n______________UUUUGGC__CU__UCG_GACUA_CUCC\n3'-UUU...CCAGU_______A___AA______________UCUAU...GUU-5'\n_____________|___________________________|\n_____________123_________________________98\n |
125 -- 131 |
116 -- 122 |
-20.2979 kcal/mol |
11.7389 kcal/mol |
2.25034 kcal/mol |
124 150@LB@ | |@LB@5'-GCA...GCGCC GC G G UCUUG...ACG-3'@LB@ GAGAUCG GA GGC CUGGU GAGG@LB@ :|:|:|| || :|| |||:| ||||@LB@ UUUUGGC CU UCG GACUA CUCC@LB@3'-UUU...CCAGU A AA UCUAU...GUU-5'@LB@ | |@LB@ 123 98@LB@@LB@@LB@Energy -6.31 kcal/mol@LB@Hybridization Energy -20.2979 kcal/mol@LB@Unfolding Energy - mRNA 11.7389 kcal/mol@LB@Unfolding Energy - sRNA 2.25034 kcal/mol@LB@@LB@Position - mRNA 125 -- 149@LB@Position - sRNA 99 -- 122@LB@Position Seed - mRNA 125 -- 131@LB@Position Seed - sRNA 116 -- 122@LB@ |
77 |
0.0008517 |
0.05078 |
pa4366 |
sodB |
-3.26 |
0.982782 |
263 -- 269 |
117 -- 123 |
superoxide dismutase |
|
_____________262_____270\n_____________|_______|\n5'-GAC...UCCGC_______CUGGA...ACA-3'\n______________AGAAACC\n______________|:|||||\n______________UUUUUGG\n3'-UUU...CCCAG_______CACUA...GUU-5'\n_____________|_______|\n_____________124_____116\n |
263 -- 269 |
117 -- 123 |
-5.6152 kcal/mol |
1.17222 kcal/mol |
1.17573 kcal/mol |
262 270@LB@ | |@LB@5'-GAC...UCCGC CUGGA...ACA-3'@LB@ AGAAACC@LB@ |:|||||@LB@ UUUUUGG@LB@3'-UUU...CCCAG CACUA...GUU-5'@LB@ | |@LB@ 124 116@LB@@LB@@LB@Energy -3.26 kcal/mol@LB@Hybridization Energy -5.6152 kcal/mol@LB@Unfolding Energy - mRNA 1.17222 kcal/mol@LB@Unfolding Energy - sRNA 1.17573 kcal/mol@LB@@LB@Position - mRNA 263 -- 269@LB@Position - sRNA 117 -- 123@LB@Position Seed - mRNA 263 -- 269@LB@Position Seed - sRNA 117 -- 123@LB@ |