| 137 |
0.002719 |
0.09122 |
pa5476 |
citA |
-9.77 |
0.199491 |
137 -- 148 |
71 -- 82 |
citrate transporter |
pa0703 pa4343 |
_____________136__________149\n_____________|____________|\n5'-UCG...CGUAC___C________CCAUC...CCG-3'\n______________CCG_CUGCGUGG\n______________|||_||||||||\n______________GGC_GACGCACC\n3'-UUU...UCUCA___U________CAGAG...GUU-5'\n_____________|____________|\n_____________83___________70\n |
142 -- 148 |
71 -- 77 |
-20.5392 kcal/mol |
6.66778 kcal/mol |
4.10469 kcal/mol |
136 149@LB@ | |@LB@5'-UCG...CGUAC C CCAUC...CCG-3'@LB@ CCG CUGCGUGG@LB@ ||| ||||||||@LB@ GGC GACGCACC@LB@3'-UUU...UCUCA U CAGAG...GUU-5'@LB@ | |@LB@ 83 70@LB@@LB@@LB@Energy -9.77 kcal/mol@LB@Hybridization Energy -20.5392 kcal/mol@LB@Unfolding Energy - mRNA 6.66778 kcal/mol@LB@Unfolding Energy - sRNA 4.10469 kcal/mol@LB@@LB@Position - mRNA 137 -- 148@LB@Position - sRNA 71 -- 82@LB@Position Seed - mRNA 142 -- 148@LB@Position Seed - sRNA 71 -- 77@LB@ |
| 68 |
0.0007335 |
0.0493 |
pa0794 |
N/A |
-9.72 |
0.203453 |
182 -- 194 |
107 -- 118 |
aconitate hydratase |
|
_____________181_____________________195\n_____________|_______________________|\n5'-CAU...ACACC________GAGUCCG____A___ACAGC...AGC-3'\n______________CCGUGAUU_______AGCC_UGA\n______________||||||||_______||||_|||\n______________GGCACUAA_______UCGG_ACU\n3'-UUU...UUUUU_______________________ACUCC...GUU-5'\n_____________|_______________________|\n_____________119_____________________106\n |
183 -- 189 |
111 -- 117 |
-17.4679 kcal/mol |
6.47077 kcal/mol |
2.24144 kcal/mol |
181 195@LB@ | |@LB@5'-CAU...ACACC GAGUCCG A ACAGC...AGC-3'@LB@ CCGUGAUU AGCC UGA@LB@ |||||||| |||| |||@LB@ GGCACUAA UCGG ACU@LB@3'-UUU...UUUUU ACUCC...GUU-5'@LB@ | |@LB@ 119 106@LB@@LB@@LB@Energy -9.72 kcal/mol@LB@Hybridization Energy -17.4679 kcal/mol@LB@Unfolding Energy - mRNA 6.47077 kcal/mol@LB@Unfolding Energy - sRNA 2.24144 kcal/mol@LB@@LB@Position - mRNA 182 -- 194@LB@Position - sRNA 107 -- 118@LB@Position Seed - mRNA 183 -- 189@LB@Position Seed - sRNA 111 -- 117@LB@ |
| 74 |
0.0008152 |
0.04991 |
pa3942 |
tesB |
-9.59 |
0.215645 |
1 -- 36 |
40 -- 80 |
acyl-CoA thioesterase II |
|
______________1_________________________________________37\n______________|_________________________________________|\n___________5'-______C____A_______G__________CUA__A______CCCUG...AGC-3'\n______________GGCUGU_UGGG_____CGG__UAUCGGCUG___CU__CGACC\n______________|:|||:_||||_____|:|__||:||||||___||__|||||\n______________CUGACG_ACCC_____GUC__AUGGCCGAC___GA__GCUGG\n3'-UUU...UCAGG______C____AGAGA___GA_________UA___GC_____UCAAC...GUU-5'\n_____________|__________________________________________|\n_____________81_________________________________________39\n |
19 -- 25 |
51 -- 57 |
-37.7037 kcal/mol |
9.97985 kcal/mol |
18.133 kcal/mol |
1 37@LB@ | |@LB@ 5'- C A G CUA A CCCUG...AGC-3'@LB@ GGCUGU UGGG CGG UAUCGGCUG CU CGACC@LB@ |:|||: |||| |:| ||:|||||| || |||||@LB@ CUGACG ACCC GUC AUGGCCGAC GA GCUGG@LB@3'-UUU...UCAGG C AGAGA GA UA GC UCAAC...GUU-5'@LB@ | |@LB@ 81 39@LB@@LB@@LB@Energy -9.59 kcal/mol@LB@Hybridization Energy -37.7037 kcal/mol@LB@Unfolding Energy - mRNA 9.97985 kcal/mol@LB@Unfolding Energy - sRNA 18.133 kcal/mol@LB@@LB@Position - mRNA 1 -- 36@LB@Position - sRNA 40 -- 80@LB@Position Seed - mRNA 19 -- 25@LB@Position Seed - sRNA 51 -- 57@LB@ |
| 113 |
0.001932 |
0.07857 |
pa1964 |
N/A |
-9.53 |
0.221537 |
258 -- 274 |
103 -- 120 |
ABC-F family ATPase |
|
_____________257________________275\n_____________|__________________|\n5'-GCA...ACGGC_____CUAC_________CGGCG...CGA-3'\n______________AACCG_____GGCCUGAU\n______________|||||_____:|||||||\n______________UUGGC_____UCGGACUA\n3'-UUU...AGUUU_____ACUAA________CUCCU...GUU-5'\n_____________|__________________|\n_____________121________________102\n |
268 -- 274 |
103 -- 109 |
-16.8873 kcal/mol |
5.11311 kcal/mol |
2.24268 kcal/mol |
257 275@LB@ | |@LB@5'-GCA...ACGGC CUAC CGGCG...CGA-3'@LB@ AACCG GGCCUGAU@LB@ ||||| :|||||||@LB@ UUGGC UCGGACUA@LB@3'-UUU...AGUUU ACUAA CUCCU...GUU-5'@LB@ | |@LB@ 121 102@LB@@LB@@LB@Energy -9.53 kcal/mol@LB@Hybridization Energy -16.8873 kcal/mol@LB@Unfolding Energy - mRNA 5.11311 kcal/mol@LB@Unfolding Energy - sRNA 2.24268 kcal/mol@LB@@LB@Position - mRNA 258 -- 274@LB@Position - sRNA 103 -- 120@LB@Position Seed - mRNA 268 -- 274@LB@Position Seed - sRNA 103 -- 109@LB@ |
| 152 |
0.003562 |
0.1073 |
pa3096 |
xcpY |
-9.37 |
0.238148 |
248 -- 259 |
98 -- 110 |
type II secretion system protein L |
|
_____________247___________260\n_____________|_____________|\n5'-ACC...GCGGG_____________ACUGG...GCG-3'\n______________GGCC_GAUGGGGA\n______________:|||_||||:|||\n______________UCGG_CUACUCCU\n3'-UUU...ACUAA____A________CUAUU...GUU-5'\n_____________|_____________|\n_____________111___________97\n |
253 -- 259 |
98 -- 104 |
-17.5774 kcal/mol |
6.04509 kcal/mol |
2.16105 kcal/mol |
247 260@LB@ | |@LB@5'-ACC...GCGGG ACUGG...GCG-3'@LB@ GGCC GAUGGGGA@LB@ :||| ||||:|||@LB@ UCGG CUACUCCU@LB@3'-UUU...ACUAA A CUAUU...GUU-5'@LB@ | |@LB@ 111 97@LB@@LB@@LB@Energy -9.37 kcal/mol@LB@Hybridization Energy -17.5774 kcal/mol@LB@Unfolding Energy - mRNA 6.04509 kcal/mol@LB@Unfolding Energy - sRNA 2.16105 kcal/mol@LB@@LB@Position - mRNA 248 -- 259@LB@Position - sRNA 98 -- 110@LB@Position Seed - mRNA 253 -- 259@LB@Position Seed - sRNA 98 -- 104@LB@ |
| 124 |
0.002337 |
0.08662 |
pa3949 |
N/A |
-9.36 |
0.238904 |
5 -- 33 |
38 -- 61 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________4_____________________________34\n_____________|_____________________________|\n_______5'-UGGC_____GA_________AGU__C_______GCGCA...GCA-3'\n______________CUUGC__CGGUUGAUC___UC_UGACCAG\n______________|||:|__|||:|||||___||_:||||||\n______________GAAUG__GCCGACUAG___AG_GCUGGUC\n3'-UUU...GAGUC_____________________C_______AACUC...GUU-5'\n_____________|_____________________________|\n_____________62____________________________37\n |
27 -- 33 |
38 -- 44 |
-29.1049 kcal/mol |
8.08568 kcal/mol |
11.6624 kcal/mol |
4 34@LB@ | |@LB@ 5'-UGGC GA AGU C GCGCA...GCA-3'@LB@ CUUGC CGGUUGAUC UC UGACCAG@LB@ |||:| |||:||||| || :||||||@LB@ GAAUG GCCGACUAG AG GCUGGUC@LB@3'-UUU...GAGUC C AACUC...GUU-5'@LB@ | |@LB@ 62 37@LB@@LB@@LB@Energy -9.36 kcal/mol@LB@Hybridization Energy -29.1049 kcal/mol@LB@Unfolding Energy - mRNA 8.08568 kcal/mol@LB@Unfolding Energy - sRNA 11.6624 kcal/mol@LB@@LB@Position - mRNA 5 -- 33@LB@Position - sRNA 38 -- 61@LB@Position Seed - mRNA 27 -- 33@LB@Position Seed - sRNA 38 -- 44@LB@ |
| 127 |
0.002525 |
0.0912 |
pa3976 |
thiE |
-9.31 |
0.244259 |
189 -- 204 |
101 -- 123 |
thiamine-phosphate pyrophosphorylase |
|
_____________188_____________________205\n_____________|_______________________|\n5'-GCC...UCACU_______________________AACUG...GCC-3'\n______________GAGAGCC______AGCC_GAUGA\n______________:|:|:||______||||_|||||\n______________UUUUUGG______UCGG_CUACU\n3'-UUU...CCCAG_______CACUAA____A_____CCUCU...GUU-5'\n_____________|_______________________|\n_____________124_____________________100\n |
189 -- 195 |
117 -- 123 |
-15.9836 kcal/mol |
4.42969 kcal/mol |
2.24445 kcal/mol |
188 205@LB@ | |@LB@5'-GCC...UCACU AACUG...GCC-3'@LB@ GAGAGCC AGCC GAUGA@LB@ :|:|:|| |||| |||||@LB@ UUUUUGG UCGG CUACU@LB@3'-UUU...CCCAG CACUAA A CCUCU...GUU-5'@LB@ | |@LB@ 124 100@LB@@LB@@LB@Energy -9.31 kcal/mol@LB@Hybridization Energy -15.9836 kcal/mol@LB@Unfolding Energy - mRNA 4.42969 kcal/mol@LB@Unfolding Energy - sRNA 2.24445 kcal/mol@LB@@LB@Position - mRNA 189 -- 204@LB@Position - sRNA 101 -- 123@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 117 -- 123@LB@ |
| 18 |
3.753e-05 |
0.009449 |
pa5036 |
gltB |
-9.24 |
0.251750 |
240 -- 259 |
103 -- 120 |
glutamate synthase subunit alpha |
|
_____________239__________________260\n_____________|____________________|\n5'-GAA...AGGAU_____CG__U__________CGCCC...AAA-3'\n______________AACUG__GA_UUGGCCUGAU\n______________|||:|__||_||:|||||||\n______________UUGGC__CU_AAUCGGACUA\n3'-UUU...AGUUU_____A______________CUCCU...GUU-5'\n_____________|____________________|\n_____________121__________________102\n |
253 -- 259 |
103 -- 109 |
-18.8705 kcal/mol |
7.38825 kcal/mol |
2.24268 kcal/mol |
239 260@LB@ | |@LB@5'-GAA...AGGAU CG U CGCCC...AAA-3'@LB@ AACUG GA UUGGCCUGAU@LB@ |||:| || ||:|||||||@LB@ UUGGC CU AAUCGGACUA@LB@3'-UUU...AGUUU A CUCCU...GUU-5'@LB@ | |@LB@ 121 102@LB@@LB@@LB@Energy -9.24 kcal/mol@LB@Hybridization Energy -18.8705 kcal/mol@LB@Unfolding Energy - mRNA 7.38825 kcal/mol@LB@Unfolding Energy - sRNA 2.24268 kcal/mol@LB@@LB@Position - mRNA 240 -- 259@LB@Position - sRNA 103 -- 120@LB@Position Seed - mRNA 253 -- 259@LB@Position Seed - sRNA 103 -- 109@LB@ |
| 135 |
0.002679 |
0.0912 |
pa0035 |
trpA |
-9.18 |
0.258333 |
240 -- 261 |
101 -- 123 |
tryptophan synthase subunit alpha |
|
_____________239_____________________262\n_____________|_______________________|\n5'-GAC...AGCAG________C_CCGC_________CCUUC...CCC-3'\n______________GAAAACCG_G_____CCUGGUGA\n______________:|||||||_|_____||||:|||\n______________UUUUUGGC_C_____GGACUACU\n3'-UUU...CCCAG________A_UAAUC________CCUCU...GUU-5'\n_____________|_______________________|\n_____________124_____________________100\n |
255 -- 261 |
101 -- 107 |
-19.6747 kcal/mol |
8.2509 kcal/mol |
2.24445 kcal/mol |
239 262@LB@ | |@LB@5'-GAC...AGCAG C CCGC CCUUC...CCC-3'@LB@ GAAAACCG G CCUGGUGA@LB@ :||||||| | ||||:|||@LB@ UUUUUGGC C GGACUACU@LB@3'-UUU...CCCAG A UAAUC CCUCU...GUU-5'@LB@ | |@LB@ 124 100@LB@@LB@@LB@Energy -9.18 kcal/mol@LB@Hybridization Energy -19.6747 kcal/mol@LB@Unfolding Energy - mRNA 8.2509 kcal/mol@LB@Unfolding Energy - sRNA 2.24445 kcal/mol@LB@@LB@Position - mRNA 240 -- 261@LB@Position - sRNA 101 -- 123@LB@Position Seed - mRNA 255 -- 261@LB@Position Seed - sRNA 101 -- 107@LB@ |
| 145 |
0.003161 |
0.1002 |
pa4147 |
acoR |
-9.16 |
0.260996 |
230 -- 255 |
98 -- 121 |
transcriptional regulator AcoR |
pa4021 |
_____________229_________________________256\n_____________|___________________________|\n5'-UAG...CAUGU________UC_____G__UCC______ACGCC...UCG-3'\n______________GGACUGUG___AGCC_UG___UGAGGA\n______________::||:|||___||||_||___||||||\n______________UUUGGCAC___UCGG_AC___ACUCCU\n3'-UUU...CAGUU________UAA_______U________CUAUU...GUU-5'\n_____________|___________________________|\n_____________122_________________________97\n |
231 -- 237 |
114 -- 120 |
-22.6885 kcal/mol |
11.2814 kcal/mol |
2.25186 kcal/mol |
229 256@LB@ | |@LB@5'-UAG...CAUGU UC G UCC ACGCC...UCG-3'@LB@ GGACUGUG AGCC UG UGAGGA@LB@ ::||:||| |||| || ||||||@LB@ UUUGGCAC UCGG AC ACUCCU@LB@3'-UUU...CAGUU UAA U CUAUU...GUU-5'@LB@ | |@LB@ 122 97@LB@@LB@@LB@Energy -9.16 kcal/mol@LB@Hybridization Energy -22.6885 kcal/mol@LB@Unfolding Energy - mRNA 11.2814 kcal/mol@LB@Unfolding Energy - sRNA 2.25186 kcal/mol@LB@@LB@Position - mRNA 230 -- 255@LB@Position - sRNA 98 -- 121@LB@Position Seed - mRNA 231 -- 237@LB@Position Seed - sRNA 114 -- 120@LB@ |
