120 |
0.002089 |
0.07999 |
pa3670 |
N/A |
-15.68 |
0.006401 |
170 -- 246 |
44 -- 120 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________169________________________________________________________________________________________247\n_____________|__________________________________________________________________________________________|\n5'-GCU...CGGUC________AGAA____GA___________________________GAAAC_____UU_______U___GCCGG____UU_______G___UGGCG...GGC-3'\n______________GACC_UGA____AGCC__AUGAGGGG__________GAGU_CGAU_____GCGUG__GUC_CUC_GGC_____GCUG__GCUGAUC_CGC\n______________:|||_|||____||||__||||||:|__________||||_|||:_____|||||__|||_|||_:||_____:|:|__|||||||_|||\n______________UUGG_ACU____UCGG__UACUCCUC__________CUCA_GCUG_____CGCAC__CAG_GAG_UCG_____UGGC__CGACUAG_GCG\n3'-UUU...AGUUU____C___AA______AC________UAUUAGACUU____G____A_________C____A_______AA________________A___CUGGU...GUU-5'\n_____________|__________________________________________________________________________________________|\n_____________121________________________________________________________________________________________43\n |
236 -- 242 |
48 -- 54 |
-64.9835 kcal/mol |
25.9985 kcal/mol |
23.3102 kcal/mol |
169 247@LB@ | |@LB@5'-GCU...CGGUC AGAA GA GAAAC UU U GCCGG UU G UGGCG...GGC-3'@LB@ GACC UGA AGCC AUGAGGGG GAGU CGAU GCGUG GUC CUC GGC GCUG GCUGAUC CGC@LB@ :||| ||| |||| ||||||:| |||| |||: ||||| ||| ||| :|| :|:| ||||||| |||@LB@ UUGG ACU UCGG UACUCCUC CUCA GCUG CGCAC CAG GAG UCG UGGC CGACUAG GCG@LB@3'-UUU...AGUUU C AA AC UAUUAGACUU G A C A AA A CUGGU...GUU-5'@LB@ | |@LB@ 121 43@LB@@LB@@LB@Energy -15.68 kcal/mol@LB@Hybridization Energy -64.9835 kcal/mol@LB@Unfolding Energy - mRNA 25.9985 kcal/mol@LB@Unfolding Energy - sRNA 23.3102 kcal/mol@LB@@LB@Position - mRNA 170 -- 246@LB@Position - sRNA 44 -- 120@LB@Position Seed - mRNA 236 -- 242@LB@Position Seed - sRNA 48 -- 54@LB@ |
23 |
5.711e-05 |
0.01105 |
pa2967 |
fabG |
-15.49 |
0.007349 |
171 -- 236 |
53 -- 111 |
3-oxoacyl-[acyl-carrier-protein] reductase FabG |
|
_____________170__________________________________________________________________237\n_____________|____________________________________________________________________|\n5'-CCC...CGCCC________GAGAGAGAA______G____CCAU_________AAG__AA____GCA_____A_______GCCAG...UCG-3'\n______________UGGCCUGA_________AGGAGA_AAUC____GAGUCUG_C___GU__GGUC___UUGGU__ACCGGC\n______________|:||||||_________||||||_||||____|||||:|_|___||__||||___|::|:__||||||\n______________AUCGGACU_________UCCUCU_UUAG____CUCAGGC_G___CA__CCAG___AGUCG__UGGCCG\n3'-UUU...CACUA________AC_____________A____ACUU_______U_ACG__C_____AG______AA______ACUAG...GUU-5'\n_____________|____________________________________________________________________|\n_____________112__________________________________________________________________52\n |
203 -- 209 |
80 -- 86 |
-53.5207 kcal/mol |
19.3634 kcal/mol |
18.6748 kcal/mol |
170 237@LB@ | |@LB@5'-CCC...CGCCC GAGAGAGAA G CCAU AAG AA GCA A GCCAG...UCG-3'@LB@ UGGCCUGA AGGAGA AAUC GAGUCUG C GU GGUC UUGGU ACCGGC@LB@ |:|||||| |||||| |||| |||||:| | || |||| |::|: ||||||@LB@ AUCGGACU UCCUCU UUAG CUCAGGC G CA CCAG AGUCG UGGCCG@LB@3'-UUU...CACUA AC A ACUU U ACG C AG AA ACUAG...GUU-5'@LB@ | |@LB@ 112 52@LB@@LB@@LB@Energy -15.49 kcal/mol@LB@Hybridization Energy -53.5207 kcal/mol@LB@Unfolding Energy - mRNA 19.3634 kcal/mol@LB@Unfolding Energy - sRNA 18.6748 kcal/mol@LB@@LB@Position - mRNA 171 -- 236@LB@Position - sRNA 53 -- 111@LB@Position Seed - mRNA 203 -- 209@LB@Position Seed - sRNA 80 -- 86@LB@ |
39 |
0.0001834 |
0.02162 |
pa3120 |
leuD |
-14.73 |
0.012246 |
171 -- 252 |
39 -- 118 |
isopropylmalate isomerase small subunit |
|
_____________170________________________________________________________________________________________253\n_____________|__________________________________________________________________________________________|\n5'-GGC...GAUGU___C_A____CUC______G___AACC_______AACCCUAUAC__A___GA_C________G________________A__________ACGUC...UCA-3'\n______________CCG_G_AUUG___GCCUGA_GAG____GAGAUGA__________CC_GAC__C___GGUCUC_UC_GCU__CC_GCUGG__UCGCG_CCA\n______________|||_|_|||:___||||||_|||____|||||:|__________||_|||__|___||||||_||_|||__||_||||:__|||||_|||\n______________GGC_C_UAAU___CGGACU_CUC____CUCUAUU__________GG_CUG__G___CCAGAG_AG_CGA__GG_CGACU__AGCGC_GGU\n3'-UUU...UUUUU___A_______________A______________AGACUUCUCA______AC_CAC_________U___AU__C_____AG_____U___CAACU...GUU-5'\n_____________|__________________________________________________________________________________________|\n_____________119________________________________________________________________________________________38\n |
198 -- 204 |
93 -- 99 |
-62.4738 kcal/mol |
24.3406 kcal/mol |
23.4063 kcal/mol |
170 253@LB@ | |@LB@5'-GGC...GAUGU C A CUC G AACC AACCCUAUAC A GA C G A ACGUC...UCA-3'@LB@ CCG G AUUG GCCUGA GAG GAGAUGA CC GAC C GGUCUC UC GCU CC GCUGG UCGCG CCA@LB@ ||| | |||: |||||| ||| |||||:| || ||| | |||||| || ||| || ||||: ||||| |||@LB@ GGC C UAAU CGGACU CUC CUCUAUU GG CUG G CCAGAG AG CGA GG CGACU AGCGC GGU@LB@3'-UUU...UUUUU A A AGACUUCUCA AC CAC U AU C AG U CAACU...GUU-5'@LB@ | |@LB@ 119 38@LB@@LB@@LB@Energy -14.73 kcal/mol@LB@Hybridization Energy -62.4738 kcal/mol@LB@Unfolding Energy - mRNA 24.3406 kcal/mol@LB@Unfolding Energy - sRNA 23.4063 kcal/mol@LB@@LB@Position - mRNA 171 -- 252@LB@Position - sRNA 39 -- 118@LB@Position Seed - mRNA 198 -- 204@LB@Position Seed - sRNA 93 -- 99@LB@ |
122 |
0.002226 |
0.08331 |
pa4286 |
N/A |
-14.46 |
0.014621 |
171 -- 194 |
98 -- 121 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________170_______________________195\n_____________|_________________________|\n5'-GGU...GAGCC________CC________AA_____AGAAU...GGC-3'\n______________GAGCCGUG___AGCCUGG__GAGGA\n______________:|:|||||___||||||:__|||||\n______________UUUGGCAC___UCGGACU__CUCCU\n3'-UUU...CAGUU________UAA_______A______CUAUU...GUU-5'\n_____________|_________________________|\n_____________122_______________________97\n |
181 -- 187 |
104 -- 110 |
-28.256 kcal/mol |
11.5428 kcal/mol |
2.25186 kcal/mol |
170 195@LB@ | |@LB@5'-GGU...GAGCC CC AA AGAAU...GGC-3'@LB@ GAGCCGUG AGCCUGG GAGGA@LB@ :|:||||| ||||||: |||||@LB@ UUUGGCAC UCGGACU CUCCU@LB@3'-UUU...CAGUU UAA A CUAUU...GUU-5'@LB@ | |@LB@ 122 97@LB@@LB@@LB@Energy -14.46 kcal/mol@LB@Hybridization Energy -28.256 kcal/mol@LB@Unfolding Energy - mRNA 11.5428 kcal/mol@LB@Unfolding Energy - sRNA 2.25186 kcal/mol@LB@@LB@Position - mRNA 171 -- 194@LB@Position - sRNA 98 -- 121@LB@Position Seed - mRNA 181 -- 187@LB@Position Seed - sRNA 104 -- 110@LB@ |
175 |
0.004467 |
0.1171 |
pa2047 |
N/A |
-7.63 |
0.467709 |
171 -- 177 |
103 -- 109 |
transcriptional regulator |
|
_____________170_____178\n_____________|_______|\n5'-CCC...UGCUU_______CCUGC...CCG-3'\n______________GCCUGAU\n______________|||||||\n______________CGGACUA\n3'-UUU...CUAAU_______CUCCU...GUU-5'\n_____________|_______|\n_____________110_____102\n |
171 -- 177 |
103 -- 109 |
-11.5321 kcal/mol |
1.79595 kcal/mol |
2.10421 kcal/mol |
170 178@LB@ | |@LB@5'-CCC...UGCUU CCUGC...CCG-3'@LB@ GCCUGAU@LB@ |||||||@LB@ CGGACUA@LB@3'-UUU...CUAAU CUCCU...GUU-5'@LB@ | |@LB@ 110 102@LB@@LB@@LB@Energy -7.63 kcal/mol@LB@Hybridization Energy -11.5321 kcal/mol@LB@Unfolding Energy - mRNA 1.79595 kcal/mol@LB@Unfolding Energy - sRNA 2.10421 kcal/mol@LB@@LB@Position - mRNA 171 -- 177@LB@Position - sRNA 103 -- 109@LB@Position Seed - mRNA 171 -- 177@LB@Position Seed - sRNA 103 -- 109@LB@ |
5 |
7.253e-07 |
0.0006667 |
pa5351 |
rubA1 |
-17.51 |
0.001615 |
172 -- 222 |
71 -- 121 |
rubredoxin |
|
_____________171___________________________________________________223\n_____________|_____________________________________________________|\n5'-CGG...GCGCU__________AAC__GCCC____UAAACAA_______AG_____AA_______UGUGU...UGC-3'\n______________GAACCGUGGU___CC____GAGG________UGAAGA___UGGC__UGCGUGG\n______________:|||||||:|___||____||||________||||||___:|:|__|||||||\n______________UUUGGCACUA___GG____CUCC________ACUUCU___GCUG__ACGCACC\n3'-UUU...CAGUU__________AUC__ACUA____UCUAUUAG______CAG_____________CAGAG...GUU-5'\n_____________|_____________________________________________________|\n_____________122___________________________________________________70\n |
216 -- 222 |
71 -- 77 |
-42.807 kcal/mol |
11.4444 kcal/mol |
13.8582 kcal/mol |
171 223@LB@ | |@LB@5'-CGG...GCGCU AAC GCCC UAAACAA AG AA UGUGU...UGC-3'@LB@ GAACCGUGGU CC GAGG UGAAGA UGGC UGCGUGG@LB@ :|||||||:| || |||| |||||| :|:| |||||||@LB@ UUUGGCACUA GG CUCC ACUUCU GCUG ACGCACC@LB@3'-UUU...CAGUU AUC ACUA UCUAUUAG CAG CAGAG...GUU-5'@LB@ | |@LB@ 122 70@LB@@LB@@LB@Energy -17.51 kcal/mol@LB@Hybridization Energy -42.807 kcal/mol@LB@Unfolding Energy - mRNA 11.4444 kcal/mol@LB@Unfolding Energy - sRNA 13.8582 kcal/mol@LB@@LB@Position - mRNA 172 -- 222@LB@Position - sRNA 71 -- 121@LB@Position Seed - mRNA 216 -- 222@LB@Position Seed - sRNA 71 -- 77@LB@ |
126 |
0.002419 |
0.08825 |
pa0452 |
N/A |
-8.57 |
0.332234 |
172 -- 209 |
83 -- 122 |
'Product name confidence: class 3 (Function proposed based on presence of conserved amino acid motif structural feature or limited sequence similarity to an experimentally studied gene)' |
|
_____________171_______________________________________210\n_____________|_________________________________________|\n5'-AGU...UCCUG_______C_C___________A_________A____U____AUUUC...UGG-3'\n______________GAAGUCG_G__UGGCC_GAUG_AGGAGGUGG__UGA_GGGU\n______________:||::||_|__|:|||_||||_|||||:|::__|||_|:||\n______________UUUUGGC_C__AUCGG_CUAC_UCCUCUAUU__ACU_CUCA\n3'-UUU...CCAGU_______A_UA_____A______________AG___U____GGCUG...GUU-5'\n_____________|_________________________________________|\n_____________123_______________________________________82\n |
193 -- 199 |
94 -- 100 |
-32.4047 kcal/mol |
13.786 kcal/mol |
10.0547 kcal/mol |
171 210@LB@ | |@LB@5'-AGU...UCCUG C C A A U AUUUC...UGG-3'@LB@ GAAGUCG G UGGCC GAUG AGGAGGUGG UGA GGGU@LB@ :||::|| | |:||| |||| |||||:|:: ||| |:||@LB@ UUUUGGC C AUCGG CUAC UCCUCUAUU ACU CUCA@LB@3'-UUU...CCAGU A UA A AG U GGCUG...GUU-5'@LB@ | |@LB@ 123 82@LB@@LB@@LB@Energy -8.57 kcal/mol@LB@Hybridization Energy -32.4047 kcal/mol@LB@Unfolding Energy - mRNA 13.786 kcal/mol@LB@Unfolding Energy - sRNA 10.0547 kcal/mol@LB@@LB@Position - mRNA 172 -- 209@LB@Position - sRNA 83 -- 122@LB@Position Seed - mRNA 193 -- 199@LB@Position Seed - sRNA 94 -- 100@LB@ |
130 |
0.002619 |
0.0912 |
pa1320 |
cyoD |
-12.20 |
0.057664 |
172 -- 192 |
99 -- 119 |
cytochrome o ubiquinol oxidase subunit IV |
|
_____________171____________________193\n_____________|______________________|\n5'-UUC...UCUUC_____C_UC_____________GCCCU...CGU-3'\n______________ACCGU_G__UA_CCUGAUGGGG\n______________|||||_|__||_|||||||:||\n______________UGGCA_C__AU_GGACUACUCC\n3'-UUU...GUUUU_______UA__C__________UCUAU...GUU-5'\n_____________|______________________|\n_____________120____________________98\n |
186 -- 192 |
99 -- 105 |
-23.5184 kcal/mol |
9.07359 kcal/mol |
2.24961 kcal/mol |
171 193@LB@ | |@LB@5'-UUC...UCUUC C UC GCCCU...CGU-3'@LB@ ACCGU G UA CCUGAUGGGG@LB@ ||||| | || |||||||:||@LB@ UGGCA C AU GGACUACUCC@LB@3'-UUU...GUUUU UA C UCUAU...GUU-5'@LB@ | |@LB@ 120 98@LB@@LB@@LB@Energy -12.20 kcal/mol@LB@Hybridization Energy -23.5184 kcal/mol@LB@Unfolding Energy - mRNA 9.07359 kcal/mol@LB@Unfolding Energy - sRNA 2.24961 kcal/mol@LB@@LB@Position - mRNA 172 -- 192@LB@Position - sRNA 99 -- 119@LB@Position Seed - mRNA 186 -- 192@LB@Position Seed - sRNA 99 -- 105@LB@ |
14 |
1.283e-05 |
0.004211 |
pa2953 |
N/A |
-15.00 |
0.010274 |
173 -- 195 |
95 -- 119 |
electron transfer flavoprotein-ubiquinone oxidoreductase |
|
_____________172________________________196\n_____________|__________________________|\n5'-CGG...CAGAU_____________U___GU_______CGAUA...CCG-3'\n______________ACCGUGA___GCC_UGA__AGGAGAU\n______________|||||||___|||_|||__|||||||\n______________UGGCACU___CGG_ACU__UCCUCUA\n3'-UUU...GUUUU_______AAU_______AC_______UUAGA...GUU-5'\n_____________|__________________________|\n_____________120________________________94\n |
189 -- 195 |
95 -- 101 |
-27.294 kcal/mol |
6.46266 kcal/mol |
5.83995 kcal/mol |
172 196@LB@ | |@LB@5'-CGG...CAGAU U GU CGAUA...CCG-3'@LB@ ACCGUGA GCC UGA AGGAGAU@LB@ ||||||| ||| ||| |||||||@LB@ UGGCACU CGG ACU UCCUCUA@LB@3'-UUU...GUUUU AAU AC UUAGA...GUU-5'@LB@ | |@LB@ 120 94@LB@@LB@@LB@Energy -15.00 kcal/mol@LB@Hybridization Energy -27.294 kcal/mol@LB@Unfolding Energy - mRNA 6.46266 kcal/mol@LB@Unfolding Energy - sRNA 5.83995 kcal/mol@LB@@LB@Position - mRNA 173 -- 195@LB@Position - sRNA 95 -- 119@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 95 -- 101@LB@ |
37 |
0.0001556 |
0.01933 |
pa4880 |
N/A |
-12.85 |
0.039617 |
174 -- 244 |
39 -- 119 |
bacterioferritin |
|
_____________173_____________________________________________________________________________________245\n_____________|_______________________________________________________________________________________|\n5'-CGC...UUUUC________C_____CA________A____C__U__CCACC____A____A__GAC________________________________UGCCC...GCC-3'\n______________ACCG_GAU_AGCCU____AGGAGA_AA_C_GA_GA_____GUUC_ACUG_CG___GUC___CAG___ACC__CU____UCGCGACCG\n______________||||_|||_|||||____||||||_||_|_||_||_____||:|_||||_||___|||___|||___|||__||____||||||||:\n______________UGGC_CUA_UCGGA____UCCUCU_UU_G_CU_CU_____CAGG_UGAC_GC___CAG___GUC___UGG__GA____AGCGCUGGU\n3'-UUU...GUUUU____A___A_____CUAC______A__A_A__U___________C_______ACC___AGA___GAA___CC__CUAG_________CAACU...GUU-5'\n_____________|_______________________________________________________________________________________|\n_____________120_____________________________________________________________________________________38\n |
238 -- 244 |
39 -- 45 |
-53.1463 kcal/mol |
16.8944 kcal/mol |
23.4063 kcal/mol |
173 245@LB@ | |@LB@5'-CGC...UUUUC C CA A C U CCACC A A GAC UGCCC...GCC-3'@LB@ ACCG GAU AGCCU AGGAGA AA C GA GA GUUC ACUG CG GUC CAG ACC CU UCGCGACCG@LB@ |||| ||| ||||| |||||| || | || || ||:| |||| || ||| ||| ||| || ||||||||:@LB@ UGGC CUA UCGGA UCCUCU UU G CU CU CAGG UGAC GC CAG GUC UGG GA AGCGCUGGU@LB@3'-UUU...GUUUU A A CUAC A A A U C ACC AGA GAA CC CUAG CAACU...GUU-5'@LB@ | |@LB@ 120 38@LB@@LB@@LB@Energy -12.85 kcal/mol@LB@Hybridization Energy -53.1463 kcal/mol@LB@Unfolding Energy - mRNA 16.8944 kcal/mol@LB@Unfolding Energy - sRNA 23.4063 kcal/mol@LB@@LB@Position - mRNA 174 -- 244@LB@Position - sRNA 39 -- 119@LB@Position Seed - mRNA 238 -- 244@LB@Position Seed - sRNA 39 -- 45@LB@ |